Wall clock time and date at job start Tue Mar 31 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.69442 * 2 1 4 4 C 1.54601 * 110.94443 * 123.41296 * 2 1 3 5 5 C 1.51574 * 102.83055 * 143.96574 * 4 2 1 6 6 C 1.37926 * 131.54784 * 163.77818 * 5 4 2 7 7 C 1.38395 * 120.06672 * 180.30042 * 6 5 4 8 8 Cl 1.73601 * 120.06738 * 179.97438 * 7 6 5 9 9 C 1.38400 * 119.85865 * 359.97438 * 7 6 5 10 10 C 1.37904 * 120.25062 * 359.87779 * 9 7 6 11 11 C 1.38955 * 107.95323 * 343.79554 * 5 4 2 12 12 N 1.40109 * 110.95908 * 359.57157 * 11 5 4 13 13 C 1.46894 * 110.99913 * 256.26484 * 12 11 5 14 14 C 1.52997 * 109.47515 * 290.00205 * 13 12 11 15 15 C 1.53000 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46912 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99776 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00001 * 179.97438 * 16 15 14 19 19 N 1.31511 * 120.00114 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46725 * 60.00489 * 20 18 16 22 22 H 1.48505 * 109.46988 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47116 * 300.00464 * 20 18 16 24 24 H 1.08998 * 109.47644 * 183.28960 * 1 2 3 25 25 H 1.09007 * 109.46809 * 303.28293 * 1 2 3 26 26 H 1.09002 * 109.47296 * 63.28118 * 1 2 3 27 27 H 1.08997 * 110.73539 * 262.30114 * 4 2 1 28 28 H 1.09005 * 110.73890 * 25.63066 * 4 2 1 29 29 H 1.07996 * 119.96438 * 0.27729 * 6 5 4 30 30 H 1.08004 * 119.87061 * 179.84897 * 9 7 6 31 31 H 1.08000 * 119.89101 * 179.97438 * 10 9 7 32 32 H 1.09002 * 109.47104 * 169.99938 * 13 12 11 33 33 H 1.08998 * 109.46828 * 50.00770 * 13 12 11 34 34 H 1.09002 * 109.47153 * 59.99762 * 14 13 12 35 35 H 1.09001 * 109.46832 * 299.99953 * 14 13 12 36 36 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 37 37 H 1.08992 * 109.47399 * 59.99823 * 15 14 13 38 38 H 0.97000 * 120.00354 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9151 1.0197 0.0000 4 6 2.0826 -0.7951 1.2052 5 6 3.3191 -1.4587 0.6323 6 6 4.4030 -2.0551 1.2421 7 6 5.4222 -2.5910 0.4745 8 17 6.7868 -3.3411 1.2420 9 6 5.3513 -2.5277 -0.9063 10 6 4.2678 -1.9349 -1.5198 11 6 3.2363 -1.3949 -0.7533 12 7 2.0545 -0.7590 -1.1561 13 6 1.0681 -1.7360 -1.6358 14 6 1.5370 -2.3214 -2.9694 15 6 0.5092 -3.3386 -3.4693 16 6 0.9707 -3.9148 -4.7831 17 1 1.9040 -3.5884 -5.2178 18 6 0.2021 -4.8593 -5.4297 19 7 -0.9341 -5.2571 -4.9001 20 14 0.7738 -5.5729 -7.0586 21 1 2.0852 -6.2443 -6.8717 22 1 -0.2237 -6.5603 -7.5438 23 1 0.9142 -4.4812 -8.0553 24 1 -0.3634 -1.0259 0.0590 25 1 -0.3633 0.5640 0.8592 26 1 -0.3634 0.4621 -0.9179 27 1 2.3481 -0.1235 2.0216 28 1 1.3622 -1.5426 1.5376 29 1 4.4565 -2.1035 2.3196 30 1 6.1478 -2.9437 -1.5054 31 1 4.2186 -1.8883 -2.5977 32 1 0.1058 -1.2430 -1.7737 33 1 0.9644 -2.5369 -0.9038 34 1 2.4993 -2.8144 -2.8315 35 1 1.6406 -1.5205 -3.7013 36 1 0.4051 -4.1397 -2.7374 37 1 -0.4529 -2.8453 -3.6072 38 1 -1.4747 -5.9219 -5.3548 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001655145504.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:44 Heat of formation + Delta-G solvation = 3.277095 kcal Electronic energy + Delta-G solvation = -19320.626994 eV Core-core repulsion = 16380.715350 eV Total energy + Delta-G solvation = -2939.911645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.07247 -38.65074 -37.12698 -36.10680 -34.29945 -32.51475 -32.03739 -30.40070 -28.06776 -27.36406 -25.00161 -23.19842 -22.72259 -21.75612 -20.97662 -18.52091 -17.66006 -17.32237 -17.12872 -16.58432 -16.34526 -15.62473 -15.43858 -14.70188 -14.56105 -14.37025 -14.10306 -13.81496 -13.69460 -13.63942 -13.19730 -12.85412 -12.73681 -12.56677 -12.49622 -12.42929 -12.24983 -12.06171 -11.96328 -11.72129 -11.48927 -11.31645 -11.13233 -10.54728 -10.21419 -9.90202 -8.86324 -8.19932 -6.30643 0.08622 0.26436 1.12123 1.39836 1.42714 1.50558 2.40081 2.47181 2.71472 3.13383 3.49582 3.72915 3.87002 3.94560 4.09538 4.19260 4.26860 4.35885 4.41125 4.49725 4.66678 4.69582 4.72437 4.80311 4.89517 4.94787 4.98731 5.10009 5.18339 5.19729 5.25753 5.28264 5.40406 5.51177 5.59365 5.73385 5.84636 5.96669 6.22038 6.26546 6.85096 7.38403 8.91773 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.014932 B = 0.004711 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.717320 B = 5941.958879 C = 7429.285079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.073 3.927 3 H 0.108 0.892 4 C -0.097 4.097 5 C -0.138 4.138 6 C -0.083 4.083 7 C -0.056 4.056 8 Cl -0.066 7.066 9 C -0.098 4.098 10 C -0.113 4.113 11 C 0.086 3.914 12 N -0.500 5.500 13 C 0.069 3.931 14 C -0.097 4.097 15 C 0.030 3.970 16 C -0.542 4.542 17 H 0.058 0.942 18 C 0.002 3.998 19 N -0.932 5.932 20 Si 0.962 3.038 21 H -0.268 1.268 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.053 0.947 25 H 0.093 0.907 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.151 0.849 30 H 0.149 0.851 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.026 0.974 34 H 0.050 0.950 35 H 0.052 0.948 36 H -0.013 1.013 37 H -0.005 1.005 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.728 10.097 14.913 20.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 H 0.126 0.874 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.102 4.102 7 C -0.083 4.083 8 Cl -0.037 7.037 9 C -0.117 4.117 10 C -0.133 4.133 11 C -0.010 4.010 12 N -0.218 5.218 13 C -0.056 4.056 14 C -0.135 4.135 15 C -0.008 4.008 16 C -0.580 4.580 17 H 0.076 0.924 18 C -0.196 4.196 19 N -0.573 5.573 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.072 0.928 25 H 0.112 0.888 26 H 0.083 0.917 27 H 0.131 0.869 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.110 0.890 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.006 0.994 37 H 0.013 0.987 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.726 10.290 14.506 20.271 hybrid contribution 0.019 -1.271 -0.430 1.342 sum 9.745 9.019 14.076 19.351 Atomic orbital electron populations 1.22065 0.92590 1.02647 1.03704 1.22885 0.96299 0.98134 0.85997 0.87408 1.21824 0.92929 0.99425 0.99350 1.21193 0.97511 1.01109 0.94272 1.20390 0.91442 0.97457 1.00880 1.20766 0.91779 1.02847 0.92904 1.98351 1.43081 1.80846 1.81407 1.20987 0.98628 0.99130 0.92951 1.20711 0.92536 0.99650 1.00411 1.19867 0.92828 0.95286 0.93045 1.60327 1.02820 1.24218 1.34448 1.22239 0.95117 0.92539 0.95724 1.21540 0.98918 0.97740 0.95312 1.18920 0.94039 0.93176 0.94647 1.21624 1.06547 1.23031 1.06815 0.92414 1.25937 0.94959 0.96969 1.01708 1.70079 1.14093 1.32169 1.40923 0.85547 0.78188 0.78307 0.79309 1.19306 1.20717 1.19130 0.92787 0.88847 0.91724 0.86872 0.89517 0.83176 0.83303 0.85314 0.88993 0.95590 0.93110 0.92887 0.99432 0.98666 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 7.86 71.98 0.57 -2.39 16 2 C 0.07 1.59 3.97 45.26 0.18 1.77 16 3 H 0.11 2.08 8.14 -2.39 -0.02 2.07 16 4 C -0.10 -1.91 6.51 30.67 0.20 -1.71 16 5 C -0.14 -3.46 6.23 -19.49 -0.12 -3.58 16 6 C -0.08 -1.91 9.82 22.23 0.22 -1.69 16 7 C -0.06 -1.36 6.32 22.35 0.14 -1.22 16 8 Cl -0.07 -1.41 28.96 -2.72 -0.08 -1.49 16 9 C -0.10 -2.55 9.81 22.23 0.22 -2.33 16 10 C -0.11 -3.37 8.55 22.47 0.19 -3.18 16 11 C 0.09 2.57 5.29 38.27 0.20 2.78 16 12 N -0.50 -14.88 5.05 -665.07 -3.36 -18.24 16 13 C 0.07 2.38 3.71 86.30 0.32 2.70 16 14 C -0.10 -4.13 5.02 30.59 0.15 -3.98 16 15 C 0.03 1.59 4.97 29.85 0.15 1.74 16 16 C -0.54 -31.32 9.11 25.60 0.23 -31.08 16 17 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 18 C 0.00 0.12 5.46 84.66 0.46 0.58 16 19 N -0.93 -57.06 13.29 21.45 0.28 -56.78 16 20 Si 0.96 44.64 29.54 68.60 2.03 46.66 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.05 1.18 6.68 -2.39 -0.02 1.17 16 25 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.06 1.34 7.63 -2.39 -0.02 1.32 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.69 7.88 -2.38 -0.02 1.67 16 29 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 31 H 0.13 3.99 7.15 -2.91 -0.02 3.96 16 32 H 0.09 3.05 5.77 -2.39 -0.01 3.03 16 33 H 0.03 0.94 7.99 -2.39 -0.02 0.92 16 34 H 0.05 2.15 5.55 -2.39 -0.01 2.14 16 35 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 36 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -65.08 320.47 3.03 -62.05 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.04 Total: 9.38 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 3.11 Total: -41.59 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -3.08 Total: -75.02 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -65.08 3.03 -62.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001655145504.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.324 kcal (2) G-P(sol) polarization free energy of solvation -65.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds