Wall clock time and date at job start Tue Mar 31 2020 00:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47210 * 38.37064 * 3 2 1 5 5 C 1.36938 * 119.99657 * 263.91154 * 4 3 2 6 6 H 1.08003 * 119.99892 * 199.39807 * 5 4 3 7 7 C 1.38808 * 120.00512 * 19.39902 * 5 4 3 8 8 N 1.31617 * 119.99676 * 22.27780 * 7 5 4 9 9 Si 1.86802 * 120.00329 * 202.28710 * 7 5 4 10 10 H 1.48501 * 109.47023 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47347 * 119.99621 * 9 7 5 12 12 H 1.48498 * 109.47008 * 239.99748 * 9 7 5 13 13 C 1.46493 * 120.00120 * 83.91274 * 4 3 2 14 14 C 1.53001 * 109.47679 * 89.99902 * 13 4 3 15 15 C 1.52991 * 109.47632 * 179.97438 * 14 13 4 16 16 C 1.50702 * 109.47410 * 180.02562 * 15 14 13 17 17 C 1.38252 * 119.96481 * 269.72342 * 16 15 14 18 18 C 1.38212 * 120.07063 * 179.76200 * 17 16 15 19 19 C 1.38413 * 119.99966 * 0.51367 * 18 17 16 20 20 F 1.35102 * 120.03452 * 179.71874 * 19 18 17 21 21 C 1.38648 * 119.92586 * 359.74645 * 19 18 17 22 22 F 1.35101 * 120.03007 * 180.02562 * 21 19 18 23 23 C 1.38214 * 119.96233 * 90.00252 * 16 15 14 24 24 H 4.40637 * 5.51309 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.47705 * 278.36618 * 3 2 1 26 26 H 1.09006 * 109.47239 * 158.36827 * 3 2 1 27 27 H 0.97006 * 120.00143 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47434 * 329.99890 * 13 4 3 29 29 H 1.09003 * 109.47549 * 209.99961 * 13 4 3 30 30 H 1.09001 * 109.47093 * 300.00264 * 14 13 4 31 31 H 1.09009 * 109.46791 * 59.99466 * 14 13 4 32 32 H 1.09001 * 109.47139 * 300.00287 * 15 14 13 33 33 H 1.08999 * 109.47416 * 60.00028 * 15 14 13 34 34 H 1.08004 * 119.96556 * 0.02640 * 17 16 15 35 35 H 1.08003 * 120.00190 * 180.25788 * 18 17 16 36 36 H 1.07996 * 120.00205 * 359.94899 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0820 -0.8574 5 6 3.4821 -2.2871 -0.3075 6 1 4.1210 -2.9656 -0.8532 7 6 3.0131 -2.6366 0.9514 8 7 1.9283 -2.0663 1.4311 9 14 3.9218 -3.9161 1.9646 10 1 5.1017 -4.4023 1.2052 11 1 4.3714 -3.3077 3.2423 12 1 3.0143 -5.0560 2.2515 13 6 3.2520 -0.8755 -2.3029 14 6 4.6449 -0.3331 -2.6295 15 6 4.7676 -0.1181 -4.1392 16 6 6.1398 0.4156 -4.4608 17 6 6.3614 1.7799 -4.4873 18 6 7.6201 2.2716 -4.7771 19 6 8.6580 1.3980 -5.0518 20 9 9.8873 1.8780 -5.3408 21 6 8.4344 0.0298 -5.0306 22 9 9.4460 -0.8248 -5.2979 23 6 7.1740 -0.4595 -4.7347 24 1 -1.0498 -0.0003 0.0000 25 1 3.0094 -0.1487 1.0167 26 1 3.0089 0.9562 -0.3789 27 1 1.6007 -2.3102 2.3110 28 1 2.4977 -0.1599 -2.6301 29 1 3.1013 -1.8237 -2.8189 30 1 4.7957 0.6151 -2.1135 31 1 5.3993 -1.0487 -2.3022 32 1 4.6169 -1.0665 -4.6548 33 1 4.0132 0.5973 -4.4668 34 1 5.5510 2.4623 -4.2770 35 1 7.7930 3.3376 -4.7934 36 1 6.9987 -1.5250 -4.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001660819650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:05 Heat of formation + Delta-G solvation = 3.372985 kcal Electronic energy + Delta-G solvation = -20446.378110 eV Core-core repulsion = 16954.673944 eV Total energy + Delta-G solvation = -3491.704167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.55303 -48.63145 -39.32473 -36.45333 -34.04323 -31.55723 -31.38188 -30.90075 -29.21153 -26.23006 -25.59142 -23.41331 -22.93929 -21.27300 -20.37973 -18.02923 -17.49272 -17.24667 -17.00861 -16.39641 -16.27864 -15.15301 -15.05291 -14.69242 -14.58041 -14.29979 -14.06788 -13.65682 -13.51096 -13.18994 -12.83938 -12.69343 -12.13100 -11.69808 -11.53819 -11.45683 -11.11598 -10.97508 -10.91425 -10.77937 -10.30966 -10.03860 -9.96385 -9.20255 -8.93442 -8.80553 -8.64578 -8.43959 -6.96632 -5.79319 -3.21819 0.79279 0.86626 3.22613 3.35853 3.44987 3.46447 3.66631 4.15789 4.21127 4.37853 4.39916 4.52856 4.58483 4.86760 4.99741 5.30169 5.32599 5.44199 5.56718 5.65554 5.72598 5.83152 5.84928 5.87268 5.97448 6.05347 6.30044 6.32770 6.43025 6.63244 6.68420 6.77547 6.96286 7.20173 7.41637 7.75751 8.29392 9.09999 9.19552 9.77763 10.24485 11.23989 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003749 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.342643 B = 7466.629828 C = 8387.225680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 C -0.096 4.096 3 C 0.269 3.731 4 N -0.588 5.588 5 C -0.265 4.265 6 H 0.074 0.926 7 C 0.004 3.996 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.292 1.292 13 C 0.149 3.851 14 C -0.131 4.131 15 C -0.083 4.083 16 C -0.047 4.047 17 C -0.100 4.100 18 C -0.123 4.123 19 C 0.051 3.949 20 F -0.134 7.134 21 C 0.069 3.931 22 F -0.132 7.132 23 C -0.125 4.125 24 H 0.190 0.810 25 H 0.091 0.909 26 H 0.036 0.964 27 H 0.253 0.747 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.141 0.859 35 H 0.143 0.857 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.189 8.303 -12.491 17.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.099 4.099 3 C 0.143 3.857 4 N -0.307 5.307 5 C -0.394 4.394 6 H 0.092 0.908 7 C -0.195 4.195 8 N -0.529 5.529 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.219 1.219 13 C 0.022 3.978 14 C -0.172 4.172 15 C -0.121 4.121 16 C -0.048 4.048 17 C -0.118 4.118 18 C -0.142 4.142 19 C 0.031 3.969 20 F -0.113 7.113 21 C 0.049 3.951 22 F -0.110 7.110 23 C -0.144 4.144 24 H 0.207 0.793 25 H 0.109 0.891 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 8.226 8.223 -12.345 16.961 hybrid contribution 0.566 -0.922 0.625 1.250 sum 8.791 7.301 -11.719 16.368 Atomic orbital electron populations 1.24177 0.95341 1.06692 1.05860 1.24326 0.95350 0.94651 0.95583 1.17710 0.82820 0.88394 0.96753 1.44036 1.74834 1.11283 1.00579 1.19197 1.24338 0.95546 1.00345 0.90830 1.24925 0.96106 0.98772 0.99707 1.70143 1.19422 1.45225 1.18145 0.86326 0.79558 0.80984 0.80537 1.20290 1.21537 1.21892 1.20778 0.92842 0.98430 0.85761 1.22249 1.01568 1.01725 0.91618 1.20721 0.91183 1.01473 0.98700 1.20023 0.96435 0.92826 0.95469 1.21052 0.96481 0.95230 0.99064 1.21066 0.91927 1.00110 1.01077 1.17677 0.81769 0.90692 1.06735 1.91508 1.40084 1.88424 1.91258 1.17702 0.86394 0.85800 1.05181 1.91521 1.58490 1.69486 1.91523 1.21056 0.90201 1.01829 1.01294 0.79312 0.89144 0.94576 0.93618 0.94471 0.93365 0.92391 0.91709 0.90596 0.90552 0.84146 0.83878 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.82 19.25 29.55 0.57 -6.25 16 2 C -0.10 -2.31 11.50 -37.13 -0.43 -2.74 16 3 C 0.27 6.20 5.41 -6.83 -0.04 6.16 16 4 N -0.59 -13.80 2.49 -176.58 -0.44 -14.24 16 5 C -0.27 -6.93 9.63 -15.06 -0.15 -7.08 16 6 H 0.07 1.89 7.92 -52.48 -0.42 1.48 16 7 C 0.00 0.11 4.82 -17.43 -0.08 0.03 16 8 N -0.89 -24.97 9.61 55.49 0.53 -24.44 16 9 Si 0.90 21.23 29.61 -169.99 -5.03 16.20 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 13 C 0.15 2.78 5.67 -4.05 -0.02 2.76 16 14 C -0.13 -1.97 5.52 -26.74 -0.15 -2.12 16 15 C -0.08 -0.93 5.34 -27.89 -0.15 -1.08 16 16 C -0.05 -0.51 5.13 -104.62 -0.54 -1.05 16 17 C -0.10 -0.97 9.70 -39.59 -0.38 -1.35 16 18 C -0.12 -1.20 10.02 -39.53 -0.40 -1.59 16 19 C 0.05 0.61 7.31 -39.37 -0.29 0.32 16 20 F -0.13 -1.69 17.18 2.25 0.04 -1.66 16 21 C 0.07 0.86 7.31 -39.37 -0.29 0.57 16 22 F -0.13 -1.77 17.18 2.25 0.04 -1.73 16 23 C -0.13 -1.43 9.68 -39.53 -0.38 -1.81 16 24 H 0.19 3.58 7.80 -54.10 -0.42 3.16 16 25 H 0.09 2.29 6.59 -51.93 -0.34 1.95 16 26 H 0.04 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 32 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 34 H 0.14 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 325.16 15.07 4.90 4.90 Total: -1.00 -29.66 325.16 -7.21 -36.87 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -4.53 Total: -0.68 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.72 Total: -15.23 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.09 Total: -38.68 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.08 Total: -3.39 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.66 -7.21 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660819650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.244 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds