Wall clock time and date at job start Tue Mar 31 2020 00:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47210 * 38.37064 * 3 2 1 5 5 C 1.36938 * 119.99657 * 263.91154 * 4 3 2 6 6 H 1.08003 * 119.99892 * 199.39807 * 5 4 3 7 7 C 1.38808 * 120.00512 * 19.39902 * 5 4 3 8 8 N 1.31617 * 119.99676 * 22.27780 * 7 5 4 9 9 Si 1.86802 * 120.00329 * 202.28710 * 7 5 4 10 10 H 1.48501 * 109.47023 * 359.97438 * 9 7 5 11 11 H 1.48490 * 109.47347 * 119.99621 * 9 7 5 12 12 H 1.48498 * 109.47008 * 239.99748 * 9 7 5 13 13 C 1.46493 * 120.00120 * 83.91274 * 4 3 2 14 14 C 1.53001 * 109.47679 * 89.99902 * 13 4 3 15 15 C 1.52991 * 109.47632 * 179.97438 * 14 13 4 16 16 C 1.50702 * 109.47410 * 180.02562 * 15 14 13 17 17 C 1.38252 * 119.96481 * 269.72342 * 16 15 14 18 18 C 1.38212 * 120.07063 * 179.76200 * 17 16 15 19 19 C 1.38413 * 119.99966 * 0.51367 * 18 17 16 20 20 F 1.35102 * 120.03452 * 179.71874 * 19 18 17 21 21 C 1.38648 * 119.92586 * 359.74645 * 19 18 17 22 22 F 1.35101 * 120.03007 * 180.02562 * 21 19 18 23 23 C 1.38214 * 119.96233 * 90.00252 * 16 15 14 24 24 H 4.40637 * 5.51309 * 179.97438 * 4 1 2 25 25 H 1.08997 * 109.47705 * 278.36618 * 3 2 1 26 26 H 1.09006 * 109.47239 * 158.36827 * 3 2 1 27 27 H 0.97006 * 120.00143 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.47434 * 329.99890 * 13 4 3 29 29 H 1.09003 * 109.47549 * 209.99961 * 13 4 3 30 30 H 1.09001 * 109.47093 * 300.00264 * 14 13 4 31 31 H 1.09009 * 109.46791 * 59.99466 * 14 13 4 32 32 H 1.09001 * 109.47139 * 300.00287 * 15 14 13 33 33 H 1.08999 * 109.47416 * 60.00028 * 15 14 13 34 34 H 1.08004 * 119.96556 * 0.02640 * 17 16 15 35 35 H 1.08003 * 120.00190 * 180.25788 * 18 17 16 36 36 H 1.07996 * 120.00205 * 359.94899 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1348 -1.0820 -0.8574 5 6 3.4821 -2.2871 -0.3075 6 1 4.1210 -2.9656 -0.8532 7 6 3.0131 -2.6366 0.9514 8 7 1.9283 -2.0663 1.4311 9 14 3.9218 -3.9161 1.9646 10 1 5.1017 -4.4023 1.2052 11 1 4.3714 -3.3077 3.2423 12 1 3.0143 -5.0560 2.2515 13 6 3.2520 -0.8755 -2.3029 14 6 4.6449 -0.3331 -2.6295 15 6 4.7676 -0.1181 -4.1392 16 6 6.1398 0.4156 -4.4608 17 6 6.3614 1.7799 -4.4873 18 6 7.6201 2.2716 -4.7771 19 6 8.6580 1.3980 -5.0518 20 9 9.8873 1.8780 -5.3408 21 6 8.4344 0.0298 -5.0306 22 9 9.4460 -0.8248 -5.2979 23 6 7.1740 -0.4595 -4.7347 24 1 -1.0498 -0.0003 0.0000 25 1 3.0094 -0.1487 1.0167 26 1 3.0089 0.9562 -0.3789 27 1 1.6007 -2.3102 2.3110 28 1 2.4977 -0.1599 -2.6301 29 1 3.1013 -1.8237 -2.8189 30 1 4.7957 0.6151 -2.1135 31 1 5.3993 -1.0487 -2.3022 32 1 4.6169 -1.0665 -4.6548 33 1 4.0132 0.5973 -4.4668 34 1 5.5510 2.4623 -4.2770 35 1 7.7930 3.3376 -4.7934 36 1 6.9987 -1.5250 -4.7174 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660819650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:04 Heat of formation + Delta-G solvation = -9.890487 kcal Electronic energy + Delta-G solvation = -20446.953258 eV Core-core repulsion = 16954.673944 eV Total energy + Delta-G solvation = -3492.279314 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.49757 -49.58390 -40.17913 -38.11565 -35.29499 -33.44651 -32.87437 -31.78117 -30.51742 -27.95556 -27.05529 -24.45644 -24.12941 -22.47062 -21.71852 -19.32312 -18.92768 -18.15829 -18.11096 -17.87135 -17.33304 -16.92470 -16.02004 -15.90749 -15.64666 -15.50648 -15.29139 -15.04824 -14.87685 -14.63635 -13.97189 -13.88529 -13.36632 -13.22754 -12.97838 -12.76230 -12.51922 -12.39857 -12.25610 -12.19018 -12.02943 -11.86782 -11.34980 -10.73606 -10.65269 -10.30276 -10.03054 -9.59279 -8.83468 -7.80611 -5.22691 -0.07860 0.05254 1.46225 1.50850 1.58882 2.34003 2.41947 2.55239 2.62545 2.81849 3.30406 3.32452 3.57780 3.72344 3.89476 4.08590 4.15188 4.19754 4.30319 4.58331 4.65648 4.72259 4.82439 4.92456 4.96112 4.99897 5.05473 5.10975 5.20252 5.29973 5.33420 5.60551 5.64863 5.69613 5.72661 5.81158 6.34322 7.14774 7.39652 7.89274 8.31371 9.20482 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020178 B = 0.003749 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.342643 B = 7466.629828 C = 8387.225680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 C -0.133 4.133 3 C 0.271 3.729 4 N -0.604 5.604 5 C -0.265 4.265 6 H 0.072 0.928 7 C -0.045 4.045 8 N -0.913 5.913 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.299 1.299 13 C 0.146 3.854 14 C -0.115 4.115 15 C -0.072 4.072 16 C -0.053 4.053 17 C -0.091 4.091 18 C -0.115 4.115 19 C 0.037 3.963 20 F -0.143 7.143 21 C 0.047 3.953 22 F -0.144 7.144 23 C -0.130 4.130 24 H 0.220 0.780 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.245 0.755 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.961 9.520 -13.496 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.136 4.136 3 C 0.145 3.855 4 N -0.324 5.324 5 C -0.394 4.394 6 H 0.090 0.910 7 C -0.242 4.242 8 N -0.558 5.558 9 Si 0.782 3.218 10 H -0.194 1.194 11 H -0.220 1.220 12 H -0.227 1.227 13 C 0.021 3.979 14 C -0.155 4.155 15 C -0.110 4.110 16 C -0.054 4.054 17 C -0.109 4.109 18 C -0.134 4.134 19 C 0.017 3.983 20 F -0.121 7.121 21 C 0.027 3.973 22 F -0.123 7.123 23 C -0.148 4.148 24 H 0.237 0.763 25 H 0.078 0.922 26 H 0.086 0.914 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.186 0.814 35 H 0.189 0.811 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.022 9.447 -13.389 18.245 hybrid contribution 0.608 -1.258 0.872 1.647 sum 8.630 8.189 -12.517 17.269 Atomic orbital electron populations 1.24991 0.96384 1.05551 1.04559 1.24756 0.96244 0.95780 0.96802 1.17660 0.82705 0.89624 0.95469 1.44264 1.74968 1.10587 1.02584 1.19451 1.23313 0.96264 1.00416 0.90974 1.25522 0.96920 1.00915 1.00806 1.70286 1.20744 1.46883 1.17874 0.85437 0.78536 0.78768 0.79040 1.19441 1.21953 1.22663 1.20961 0.95266 0.98615 0.83069 1.21962 0.98243 1.00875 0.94454 1.20601 0.92073 1.02596 0.95740 1.20039 0.95865 0.93473 0.95978 1.21390 0.97123 0.95012 0.97373 1.21380 0.91176 1.01203 0.99603 1.17982 0.82076 0.90856 1.07347 1.91483 1.40773 1.88459 1.91433 1.17949 0.86603 0.86149 1.06628 1.91480 1.59065 1.69945 1.91828 1.21169 0.90085 1.02355 1.01236 0.76318 0.92154 0.91395 0.94534 0.93301 0.94134 0.92151 0.93723 0.90076 0.88364 0.81377 0.81140 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.97 19.25 74.32 1.43 -11.54 16 2 C -0.13 -6.29 11.50 31.12 0.36 -5.93 16 3 C 0.27 12.36 5.41 84.57 0.46 12.82 16 4 N -0.60 -27.96 2.49 -712.58 -1.77 -29.73 16 5 C -0.26 -13.79 9.63 84.03 0.81 -12.98 16 6 H 0.07 3.70 7.92 -2.91 -0.02 3.67 16 7 C -0.05 -2.44 4.82 84.86 0.41 -2.03 16 8 N -0.91 -51.98 9.61 21.65 0.21 -51.77 16 9 Si 0.95 44.15 29.61 68.60 2.03 46.18 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 12 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 13 C 0.15 5.23 5.67 86.38 0.49 5.72 16 14 C -0.12 -3.23 5.52 30.59 0.17 -3.06 16 15 C -0.07 -1.42 5.34 29.85 0.16 -1.26 16 16 C -0.05 -1.02 5.13 -19.87 -0.10 -1.12 16 17 C -0.09 -1.43 9.70 22.27 0.22 -1.22 16 18 C -0.12 -1.90 10.02 22.31 0.22 -1.68 16 19 C 0.04 0.84 7.31 22.41 0.16 1.00 16 20 F -0.14 -3.50 17.18 44.97 0.77 -2.73 16 21 C 0.05 1.13 7.31 22.41 0.16 1.30 16 22 F -0.14 -3.93 17.18 44.97 0.77 -3.15 16 23 C -0.13 -2.82 9.68 22.30 0.22 -2.60 16 24 H 0.22 7.77 7.80 -4.43 -0.03 7.74 16 25 H 0.06 3.10 6.59 -2.39 -0.02 3.09 16 26 H 0.07 2.59 8.12 -2.38 -0.02 2.57 16 27 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 28 H 0.05 1.63 8.07 -2.39 -0.02 1.61 16 29 H 0.04 1.49 8.04 -2.39 -0.02 1.47 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 31 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 32 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.10 1.55 8.08 -2.39 -0.02 1.53 16 34 H 0.17 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.17 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -63.80 325.16 8.25 -55.55 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.07 Total: 8.25 kcal Atomic # 6 Polarization: -27.76 SS G_CDS: 5.16 Total: -22.59 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.57 Total: -81.50 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 1.55 Total: -5.88 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.80 8.25 -55.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660819650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.661 kcal (2) G-P(sol) polarization free energy of solvation -63.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds