Wall clock time and date at job start Tue Mar 31 2020 00:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48495 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99901 * 3 2 1 6 6 H 1.48494 * 109.47211 * 59.99698 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.46956 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.34764 * 117.00113 * 179.97438 * 11 10 9 13 13 O 1.21520 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.47288 * 120.00120 * 180.02562 * 12 11 10 15 15 C 1.39807 * 120.21395 * 5.81607 * 14 12 11 16 16 C 1.37719 * 119.91955 * 180.27338 * 15 14 12 17 17 C 1.38631 * 120.36404 * 359.73734 * 16 15 14 18 18 C 1.37951 * 120.43289 * 359.97438 * 17 16 15 19 19 C 1.38957 * 120.07191 * 0.02562 * 18 17 16 20 20 N 1.38829 * 120.17857 * 179.97438 * 19 18 17 21 21 C 1.46494 * 120.00220 * 354.28528 * 20 19 18 22 22 C 1.53003 * 109.47207 * 180.02562 * 21 20 19 23 23 O 1.42892 * 109.47335 * 64.99455 * 22 21 20 24 24 H 0.97005 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46961 * 59.99771 * 9 7 2 26 26 H 1.08999 * 109.46772 * 300.00034 * 9 7 2 27 27 H 1.09002 * 109.47110 * 60.00190 * 10 9 7 28 28 H 1.08999 * 109.47369 * 299.99621 * 10 9 7 29 29 H 1.07997 * 120.03691 * 0.02754 * 15 14 12 30 30 H 1.07995 * 119.82169 * 179.74690 * 16 15 14 31 31 H 1.07993 * 119.78107 * 180.02562 * 17 16 15 32 32 H 1.08008 * 119.96269 * 180.02562 * 18 17 16 33 33 H 0.97001 * 119.99607 * 174.28379 * 20 19 18 34 34 H 1.08998 * 109.47633 * 59.99938 * 21 20 19 35 35 H 1.09004 * 109.47230 * 299.99640 * 21 20 19 36 36 H 1.08998 * 109.46895 * 185.00077 * 22 21 20 37 37 H 1.09002 * 109.46897 * 304.99403 * 22 21 20 38 38 H 0.96706 * 113.99819 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5191 -4.9196 0.0024 12 6 2.2530 -6.0498 0.0031 13 8 3.4666 -5.9863 0.0035 14 6 1.5844 -7.3622 0.0031 15 6 0.1941 -7.4434 -0.1199 16 6 -0.4254 -8.6734 -0.1134 17 6 0.3226 -9.8341 0.0091 18 6 1.6958 -9.7715 0.1253 19 6 2.3395 -8.5400 0.1209 20 7 3.7213 -8.4744 0.2384 21 6 4.4935 -9.6930 0.4928 22 6 5.9811 -9.3455 0.5782 23 8 6.2104 -8.5087 1.7136 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8711 -3.6040 0.8923 28 1 2.8724 -3.6048 -0.8877 29 1 -0.3937 -6.5425 -0.2158 30 1 -1.4998 -8.7341 -0.2044 31 1 -0.1728 -10.7937 0.0126 32 1 2.2712 -10.6806 0.2199 33 1 4.1753 -7.6216 0.1519 34 1 4.3317 -10.4019 -0.3192 35 1 4.1702 -10.1382 1.4337 36 1 6.5630 -10.2617 0.6786 37 1 6.2841 -8.8202 -0.3275 38 1 7.1345 -8.2488 1.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:04 Heat of formation + Delta-G solvation = -115.068360 kcal Electronic energy + Delta-G solvation = -21021.982019 eV Core-core repulsion = 17636.229365 eV Total energy + Delta-G solvation = -3385.752653 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.38477 -38.78315 -37.48449 -36.13795 -35.07939 -33.31832 -31.49282 -30.58319 -30.06704 -27.76008 -25.24519 -23.89909 -23.21426 -21.31935 -21.03219 -20.46899 -17.96096 -17.69241 -17.17655 -16.50961 -16.09955 -15.88245 -15.79613 -15.08459 -14.60371 -14.37299 -14.16813 -14.10747 -13.63860 -13.30752 -13.16703 -12.72252 -12.40883 -12.34495 -11.91372 -11.58378 -11.23641 -11.21568 -10.99626 -10.75048 -10.65217 -10.40083 -10.18959 -10.06516 -9.62072 -9.57073 -9.25867 -8.99068 -8.42610 -7.47144 -6.08530 -4.12583 0.93728 1.61784 2.88011 3.26868 3.28799 3.36545 3.38409 3.42573 3.89878 3.97493 4.41148 4.66846 4.77656 4.88263 4.96452 4.99829 5.15482 5.28140 5.30136 5.41952 5.46697 5.49246 5.65822 5.95529 6.12970 6.13836 6.17173 6.36783 6.55281 6.67410 6.78713 6.94662 7.26154 7.34155 7.57764 7.65624 7.86829 7.95646 8.23322 8.33059 8.93140 9.51635 11.03081 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.003699 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.656529 B = 7567.269111 C = 8947.412838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.525 4.525 8 H 0.059 0.941 9 C 0.024 3.976 10 C 0.076 3.924 11 O -0.349 6.349 12 C 0.514 3.486 13 O -0.532 6.532 14 C -0.212 4.212 15 C -0.008 4.008 16 C -0.201 4.201 17 C -0.037 4.037 18 C -0.222 4.222 19 C 0.278 3.722 20 N -0.723 5.723 21 C 0.117 3.883 22 C 0.065 3.935 23 O -0.566 6.566 24 H 0.263 0.737 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.139 0.861 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.423 0.577 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.099 -23.087 -0.079 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.265 6.265 12 C 0.362 3.638 13 O -0.425 6.425 14 C -0.219 4.219 15 C -0.027 4.027 16 C -0.221 4.221 17 C -0.056 4.056 18 C -0.245 4.245 19 C 0.168 3.832 20 N -0.362 5.362 21 C -0.008 4.008 22 C -0.013 4.013 23 O -0.372 6.372 24 H 0.072 0.928 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.157 0.843 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.272 0.728 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.818 -23.071 0.024 23.793 hybrid contribution 1.333 1.269 -0.115 1.844 sum 7.151 -21.802 -0.091 22.945 Atomic orbital electron populations 1.69988 1.06080 1.26840 1.49914 1.24984 0.94915 0.99372 0.94905 0.86420 0.80045 0.83186 0.77687 1.19617 1.20837 1.20833 1.21020 0.93204 0.90121 1.51992 0.92229 1.19176 0.94214 0.89022 0.98906 1.23644 0.96396 0.78687 1.00924 1.86587 1.41688 1.15526 1.82685 1.20978 0.85266 0.85419 0.72099 1.90415 1.15542 1.87261 1.49262 1.18657 0.94175 0.88944 1.20092 1.21346 0.92356 0.98779 0.90205 1.20856 1.00108 0.92018 1.09166 1.21081 0.93131 0.98408 0.93027 1.20552 0.95164 0.95290 1.13478 1.17777 0.84028 0.92391 0.89013 1.45629 1.03181 1.12092 1.75283 1.21464 0.89908 0.88332 1.01120 1.22365 0.95507 0.94291 0.89181 1.86578 1.32512 1.70443 1.47647 0.92782 0.95312 0.95303 0.92300 0.92332 0.84272 0.85705 0.85882 0.85710 0.72754 0.90752 0.91353 0.92123 0.92826 0.77134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.53 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 9 C 0.02 0.64 5.35 -27.88 -0.15 0.49 16 10 C 0.08 1.76 5.41 37.15 0.20 1.96 16 11 O -0.35 -7.43 9.49 -40.67 -0.39 -7.82 16 12 C 0.51 10.03 7.87 34.41 0.27 10.30 16 13 O -0.53 -10.94 13.44 -19.28 -0.26 -11.20 16 14 C -0.21 -3.46 5.89 -104.82 -0.62 -4.08 16 15 C -0.01 -0.12 9.61 -39.18 -0.38 -0.49 16 16 C -0.20 -2.31 10.02 -39.63 -0.40 -2.71 16 17 C -0.04 -0.38 10.03 -39.54 -0.40 -0.78 16 18 C -0.22 -2.51 9.30 -39.42 -0.37 -2.88 16 19 C 0.28 3.99 6.65 -83.61 -0.56 3.44 16 20 N -0.72 -10.02 5.53 -58.44 -0.32 -10.34 16 21 C 0.12 1.13 5.33 -4.04 -0.02 1.11 16 22 C 0.06 0.54 7.18 37.16 0.27 0.81 16 23 O -0.57 -5.95 13.60 -35.23 -0.48 -6.43 16 24 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.14 1.97 7.62 -52.49 -0.40 1.57 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.13 1.10 6.72 -52.48 -0.35 0.74 16 33 H 0.42 6.86 4.99 -40.94 -0.20 6.65 16 34 H 0.07 0.55 7.72 -51.93 -0.40 0.15 16 35 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 2.25 9.12 45.56 0.42 2.67 16 LS Contribution 328.72 15.07 4.95 4.95 Total: -1.00 -33.64 328.72 -7.62 -41.26 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.29 Total: 5.39 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -2.55 Total: -6.53 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.41 Total: -36.23 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -1.12 Total: -25.44 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.64 -7.62 -41.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.807 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds