Wall clock time and date at job start Tue Mar 31 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00186 * 2 1 4 4 H 1.48495 * 109.47079 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46948 * 299.99901 * 3 2 1 6 6 H 1.48494 * 109.47211 * 59.99698 * 3 2 1 7 7 C 1.37880 * 119.99711 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99868 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00123 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.46956 * 180.02562 * 9 7 2 11 11 O 1.45204 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.34764 * 117.00113 * 179.97438 * 11 10 9 13 13 O 1.21520 * 119.99909 * 0.02562 * 12 11 10 14 14 C 1.47288 * 120.00120 * 180.02562 * 12 11 10 15 15 C 1.39807 * 120.21395 * 5.81607 * 14 12 11 16 16 C 1.37719 * 119.91955 * 180.27338 * 15 14 12 17 17 C 1.38631 * 120.36404 * 359.73734 * 16 15 14 18 18 C 1.37951 * 120.43289 * 359.97438 * 17 16 15 19 19 C 1.38957 * 120.07191 * 0.02562 * 18 17 16 20 20 N 1.38829 * 120.17857 * 179.97438 * 19 18 17 21 21 C 1.46494 * 120.00220 * 354.28528 * 20 19 18 22 22 C 1.53003 * 109.47207 * 180.02562 * 21 20 19 23 23 O 1.42892 * 109.47335 * 64.99455 * 22 21 20 24 24 H 0.97005 * 119.99608 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.46961 * 59.99771 * 9 7 2 26 26 H 1.08999 * 109.46772 * 300.00034 * 9 7 2 27 27 H 1.09002 * 109.47110 * 60.00190 * 10 9 7 28 28 H 1.08999 * 109.47369 * 299.99621 * 10 9 7 29 29 H 1.07997 * 120.03691 * 0.02754 * 15 14 12 30 30 H 1.07995 * 119.82169 * 179.74690 * 16 15 14 31 31 H 1.07993 * 119.78107 * 180.02562 * 17 16 15 32 32 H 1.08008 * 119.96269 * 180.02562 * 18 17 16 33 33 H 0.97001 * 119.99607 * 174.28379 * 20 19 18 34 34 H 1.08998 * 109.47633 * 59.99938 * 21 20 19 35 35 H 1.09004 * 109.47230 * 299.99640 * 21 20 19 36 36 H 1.08998 * 109.46895 * 185.00077 * 22 21 20 37 37 H 1.09002 * 109.46897 * 304.99403 * 22 21 20 38 38 H 0.96706 * 113.99819 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0018 11 8 1.5191 -4.9196 0.0024 12 6 2.2530 -6.0498 0.0031 13 8 3.4666 -5.9863 0.0035 14 6 1.5844 -7.3622 0.0031 15 6 0.1941 -7.4434 -0.1199 16 6 -0.4254 -8.6734 -0.1134 17 6 0.3226 -9.8341 0.0091 18 6 1.6958 -9.7715 0.1253 19 6 2.3395 -8.5400 0.1209 20 7 3.7213 -8.4744 0.2384 21 6 4.4935 -9.6930 0.4928 22 6 5.9811 -9.3455 0.5782 23 8 6.2104 -8.5087 1.7136 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6239 -2.5567 0.8903 27 1 2.8711 -3.6040 0.8923 28 1 2.8724 -3.6048 -0.8877 29 1 -0.3937 -6.5425 -0.2158 30 1 -1.4998 -8.7341 -0.2044 31 1 -0.1728 -10.7937 0.0126 32 1 2.2712 -10.6806 0.2199 33 1 4.1753 -7.6216 0.1519 34 1 4.3317 -10.4019 -0.3192 35 1 4.1702 -10.1382 1.4337 36 1 6.5630 -10.2617 0.6786 37 1 6.2841 -8.8202 -0.3275 38 1 7.1345 -8.2488 1.8304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817621.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:03 Heat of formation + Delta-G solvation = -138.767543 kcal Electronic energy + Delta-G solvation = -21023.009692 eV Core-core repulsion = 17636.229365 eV Total energy + Delta-G solvation = -3386.780327 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.73535 -40.00717 -38.24864 -37.68826 -36.06496 -35.44422 -32.79400 -31.94694 -31.39003 -28.68569 -27.18497 -25.12848 -24.21368 -22.94209 -22.23935 -21.84087 -19.19105 -18.65348 -18.40021 -18.12574 -17.60443 -17.53039 -16.94681 -16.53593 -15.85828 -15.46809 -15.32045 -15.01913 -14.96165 -14.46901 -14.38878 -14.22000 -14.06835 -13.41042 -13.12232 -13.09707 -12.89458 -12.63274 -12.57555 -12.28563 -12.13669 -11.81804 -11.52679 -11.49483 -11.25086 -11.11240 -10.99992 -10.63833 -10.00316 -8.45708 -8.28766 -6.42423 -0.16955 0.65464 1.39568 1.40833 1.53903 1.54793 1.76853 2.39305 2.46247 2.91940 3.05416 3.33308 3.71200 3.90774 4.00527 4.15397 4.17980 4.21482 4.23825 4.41794 4.50051 4.52002 4.59284 4.65691 4.73541 4.83442 5.02638 5.17545 5.22069 5.42935 5.43582 5.48899 5.62682 5.70969 5.89052 6.04021 6.34361 6.61379 6.70734 6.82553 6.87192 7.27349 8.84295 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.003699 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.656529 B = 7567.269111 C = 8947.412838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.032 3.968 10 C 0.092 3.908 11 O -0.360 6.360 12 C 0.505 3.495 13 O -0.551 6.551 14 C -0.248 4.248 15 C -0.026 4.026 16 C -0.197 4.197 17 C -0.021 4.021 18 C -0.217 4.217 19 C 0.266 3.734 20 N -0.734 5.734 21 C 0.108 3.892 22 C 0.062 3.938 23 O -0.598 6.598 24 H 0.268 0.732 25 H 0.007 0.993 26 H 0.006 0.994 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.157 0.843 33 H 0.410 0.590 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.620 -25.362 -0.145 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.800 3.200 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.589 4.589 8 H 0.083 0.917 9 C -0.005 4.005 10 C 0.019 3.981 11 O -0.276 6.276 12 C 0.356 3.644 13 O -0.445 6.445 14 C -0.255 4.255 15 C -0.045 4.045 16 C -0.217 4.217 17 C -0.039 4.039 18 C -0.239 4.239 19 C 0.155 3.845 20 N -0.370 5.370 21 C -0.015 4.015 22 C -0.015 4.015 23 O -0.406 6.406 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.024 0.976 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.169 0.831 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.068 0.932 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.355 -25.391 -0.039 26.175 hybrid contribution 1.138 1.795 -0.087 2.128 sum 7.493 -23.596 -0.126 24.758 Atomic orbital electron populations 1.70109 1.07844 1.28276 1.50313 1.25989 0.95877 1.03468 0.93962 0.85236 0.78820 0.77881 0.78112 1.18666 1.19873 1.19946 1.21388 0.93671 0.91176 1.52637 0.91749 1.18980 0.94302 0.90583 0.96671 1.23165 0.95145 0.78983 1.00806 1.86572 1.41950 1.15585 1.83469 1.21710 0.85351 0.85784 0.71568 1.90402 1.16178 1.87505 1.50412 1.18683 0.95238 0.87683 1.23852 1.21379 0.91641 0.99901 0.91541 1.21198 1.01567 0.91211 1.07706 1.21604 0.92695 0.99700 0.89944 1.20960 0.95965 0.94947 1.12029 1.18101 0.84393 0.92818 0.89191 1.45851 1.03387 1.12878 1.74875 1.21811 0.90212 0.87257 1.02254 1.22519 0.95212 0.95434 0.88375 1.86525 1.34330 1.71198 1.48571 0.92267 0.97440 0.97602 0.92476 0.92230 0.85594 0.83115 0.81468 0.82554 0.74466 0.87888 0.91053 0.88602 0.93215 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 4 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.55 -32.33 9.11 25.60 0.23 -32.09 16 8 H 0.06 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.80 5.35 29.85 0.16 1.96 16 10 C 0.09 4.49 5.41 71.98 0.39 4.88 16 11 O -0.36 -16.29 9.49 -56.75 -0.54 -16.83 16 12 C 0.51 20.81 7.87 70.20 0.55 21.36 16 13 O -0.55 -23.82 13.44 19.77 0.27 -23.55 16 14 C -0.25 -8.30 5.89 -19.99 -0.12 -8.42 16 15 C -0.03 -0.74 9.61 22.53 0.22 -0.53 16 16 C -0.20 -4.05 10.02 22.24 0.22 -3.83 16 17 C -0.02 -0.34 10.03 22.30 0.22 -0.12 16 18 C -0.22 -4.19 9.30 22.37 0.21 -3.98 16 19 C 0.27 7.41 6.65 38.74 0.26 7.66 16 20 N -0.73 -19.98 5.53 -338.81 -1.87 -21.85 16 21 C 0.11 1.86 5.33 86.38 0.46 2.32 16 22 C 0.06 0.93 7.18 71.98 0.52 1.45 16 23 O -0.60 -12.21 13.60 -148.98 -2.03 -14.24 16 24 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.01 0.33 8.14 -2.39 -0.02 0.32 16 27 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.13 3.81 7.62 -2.91 -0.02 3.79 16 30 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 31 H 0.17 1.33 8.06 -2.91 -0.02 1.31 16 32 H 0.16 2.00 6.72 -2.91 -0.02 1.98 16 33 H 0.41 13.61 4.99 -94.57 -0.47 13.13 16 34 H 0.10 1.16 7.72 -2.39 -0.02 1.14 16 35 H 0.07 1.19 8.13 -2.38 -0.02 1.17 16 36 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.40 4.51 9.12 -74.05 -0.68 3.84 16 Total: -1.00 -75.67 328.72 1.86 -73.81 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -0.06 Total: 20.94 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: 3.79 Total: -8.52 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -1.59 Total: -78.16 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -2.30 Total: -54.62 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -75.67 1.86 -73.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817621.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.961 kcal (2) G-P(sol) polarization free energy of solvation -75.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds