Wall clock time and date at job start Tue Mar 31 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31566 * 1 3 3 Si 1.86792 * 120.00001 * 2 1 4 4 H 1.48504 * 109.47313 * 270.00336 * 3 2 1 5 5 H 1.48507 * 109.47288 * 30.00233 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00100 * 3 2 1 7 7 C 1.38652 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00509 * 359.97438 * 7 2 1 9 9 O 1.34831 * 119.99474 * 179.97438 * 7 2 1 10 10 C 1.35758 * 116.99645 * 174.59729 * 9 7 2 11 11 C 1.38952 * 120.02871 * 173.82156 * 10 9 7 12 12 C 1.38129 * 120.06508 * 179.77002 * 11 10 9 13 13 C 1.38201 * 120.14382 * 0.51158 * 12 11 10 14 14 C 1.38920 * 120.06180 * 359.74639 * 13 12 11 15 15 N 1.39924 * 120.03509 * 180.02562 * 14 13 12 16 16 C 1.34767 * 120.00127 * 326.32296 * 15 14 13 17 17 O 1.21291 * 119.99867 * 354.77889 * 16 15 14 18 18 C 1.50702 * 120.00275 * 174.78253 * 16 15 14 19 19 C 1.53003 * 109.47360 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47100 * 180.02562 * 19 18 16 21 21 C 1.53001 * 109.46920 * 180.02562 * 20 19 18 22 22 O 1.42898 * 109.46975 * 179.97438 * 21 20 19 23 23 C 1.38728 * 120.03606 * 354.10697 * 10 9 7 24 24 H 0.96992 * 119.99899 * 359.97438 * 1 2 3 25 25 H 1.07996 * 119.97197 * 0.02867 * 11 10 9 26 26 H 1.07999 * 119.92692 * 180.25545 * 12 11 10 27 27 H 1.07990 * 119.97239 * 179.76388 * 13 12 11 28 28 H 0.97000 * 119.99968 * 146.31701 * 15 14 13 29 29 H 1.09001 * 109.47411 * 299.99899 * 18 16 15 30 30 H 1.09001 * 109.47048 * 59.99788 * 18 16 15 31 31 H 1.08991 * 109.47297 * 300.00632 * 19 18 16 32 32 H 1.09005 * 109.46483 * 60.00632 * 19 18 16 33 33 H 1.09000 * 109.47057 * 300.00109 * 20 19 18 34 34 H 1.08993 * 109.46905 * 60.00493 * 20 19 18 35 35 H 1.09001 * 109.46935 * 300.00228 * 21 20 19 36 36 H 1.09001 * 109.47234 * 59.99940 * 21 20 19 37 37 H 0.96699 * 114.00181 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.06762 * 359.94764 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4401 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 1.4689 -2.1361 -0.0005 9 8 3.3572 -1.2008 -0.0011 10 6 3.9735 -2.4050 0.1123 11 6 5.3548 -2.4935 -0.0099 12 6 5.9832 -3.7177 0.1101 13 6 5.2398 -4.8596 0.3414 14 6 3.8580 -4.7785 0.4592 15 7 3.1060 -5.9349 0.6939 16 6 3.4983 -7.1121 0.1680 17 8 4.4480 -7.1533 -0.5853 18 6 2.7569 -8.3772 0.5159 19 6 3.4001 -9.5610 -0.2092 20 6 2.6471 -10.8453 0.1435 21 6 3.2907 -12.0293 -0.5811 22 8 2.5877 -13.2288 -0.2512 23 6 3.2244 -3.5494 0.3444 24 1 -0.4849 0.8400 0.0004 25 1 5.9382 -1.6036 -0.1947 26 1 7.0573 -3.7833 0.0188 27 1 5.7336 -5.8158 0.4309 28 1 2.3024 -5.8892 1.2353 29 1 2.8034 -8.5413 1.5924 30 1 1.7157 -8.2847 0.2071 31 1 3.3534 -9.3968 -1.2856 32 1 4.4415 -9.6537 0.0994 33 1 2.6935 -11.0098 1.2200 34 1 1.6059 -10.7524 -0.1653 35 1 3.2447 -11.8649 -1.6576 36 1 4.3318 -12.1220 -0.2719 37 1 2.9418 -14.0218 -0.6765 38 1 2.1503 -3.4836 0.4361 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092171908.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:52 Heat of formation + Delta-G solvation = -100.564753 kcal Electronic energy + Delta-G solvation = -20554.624896 eV Core-core repulsion = 17169.501166 eV Total energy + Delta-G solvation = -3385.123730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27793 -38.86693 -37.53151 -36.64537 -34.65217 -34.26782 -32.37485 -30.28545 -29.32421 -28.46728 -25.28109 -24.53538 -22.12466 -21.80206 -21.20534 -19.92188 -18.03494 -17.80760 -17.59877 -16.81077 -16.40992 -15.67037 -15.43752 -15.08557 -14.71182 -14.36464 -14.03368 -13.80849 -13.70013 -13.49564 -13.12648 -12.35886 -12.30918 -12.26196 -12.07963 -11.92175 -11.67432 -11.25774 -11.22613 -10.99048 -10.98244 -10.72285 -10.31131 -10.30680 -9.95121 -9.58125 -9.49807 -8.86720 -7.82355 -7.31731 -6.44478 -4.11769 1.86822 2.25017 2.80890 3.18358 3.21752 3.25166 3.39014 3.88618 4.21898 4.46946 4.56077 4.61950 4.77355 4.86424 4.96668 5.05066 5.05669 5.07351 5.41196 5.45432 5.45945 5.62507 5.63855 5.89564 5.94852 5.95477 6.06907 6.16353 6.18270 6.46031 6.87010 6.90836 7.16713 7.18052 7.25618 7.53447 7.69273 7.75164 8.00070 8.28198 8.90979 9.53269 10.63270 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030694 B = 0.002968 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.010116 B = 9430.862444 C =10213.246008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.105 0.895 9 O -0.216 6.216 10 C 0.174 3.826 11 C -0.200 4.200 12 C -0.065 4.065 13 C -0.199 4.199 14 C 0.180 3.820 15 N -0.671 5.671 16 C 0.509 3.491 17 O -0.523 6.523 18 C -0.139 4.139 19 C -0.102 4.102 20 C -0.121 4.121 21 C 0.074 3.926 22 O -0.578 6.578 23 C -0.245 4.245 24 H 0.279 0.721 25 H 0.118 0.882 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.408 0.592 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.379 0.621 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.786 -18.699 1.763 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.122 0.878 9 O -0.121 6.121 10 C 0.121 3.879 11 C -0.220 4.220 12 C -0.084 4.084 13 C -0.220 4.220 14 C 0.086 3.914 15 N -0.316 5.316 16 C 0.297 3.703 17 O -0.398 6.398 18 C -0.179 4.179 19 C -0.140 4.140 20 C -0.159 4.159 21 C -0.003 4.003 22 O -0.383 6.383 23 C -0.266 4.266 24 H 0.090 0.910 25 H 0.136 0.864 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.244 0.756 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.226 0.774 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.975 -17.991 1.568 19.022 hybrid contribution -0.073 0.373 -0.079 0.388 sum 5.902 -17.618 1.489 18.640 Atomic orbital electron populations 1.69646 1.05570 1.28521 1.48104 1.24469 0.95038 0.98872 0.95621 0.86171 0.80315 0.81355 0.79016 1.19838 1.20836 1.18306 1.20725 0.76915 0.96523 1.52330 0.87816 1.83614 1.22561 1.25364 1.80534 1.18822 0.91412 0.85123 0.92551 1.20247 0.91911 0.98173 1.11685 1.20532 0.98677 0.91405 0.97747 1.20593 0.91799 0.98777 1.10783 1.17443 0.90465 0.84957 0.98495 1.43572 1.28695 1.07046 1.52254 1.20784 0.84807 0.84830 0.79874 1.90717 1.28335 1.86428 1.34318 1.21661 1.01063 0.92278 1.02888 1.21235 0.99837 0.91593 1.01325 1.21536 1.00436 0.92711 1.01181 1.22202 0.94878 0.84839 0.98429 1.86465 1.59899 1.17746 1.74212 1.20943 1.01062 0.91292 1.13333 0.91046 0.86368 0.86444 0.86209 0.75618 0.88523 0.88525 0.90816 0.90879 0.91117 0.91049 0.93476 0.93529 0.77418 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.14 13.96 55.48 0.77 -24.36 16 2 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.51 28.61 -169.99 -4.86 16.64 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.26 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.39 -10.83 9.90 30.89 0.31 -10.52 16 8 H 0.10 2.93 5.53 -52.49 -0.29 2.64 16 9 O -0.22 -5.65 8.58 0.02 0.00 -5.65 16 10 C 0.17 4.01 6.64 -39.14 -0.26 3.75 16 11 C -0.20 -4.02 9.99 -39.36 -0.39 -4.42 16 12 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 13 C -0.20 -3.68 8.65 -39.34 -0.34 -4.02 16 14 C 0.18 3.36 6.27 -83.72 -0.52 2.84 16 15 N -0.67 -9.86 5.34 -9.88 -0.05 -9.91 16 16 C 0.51 7.10 7.56 -10.99 -0.08 7.02 16 17 O -0.52 -9.17 13.69 5.55 0.08 -9.09 16 18 C -0.14 -1.27 5.70 -27.88 -0.16 -1.42 16 19 C -0.10 -0.92 4.50 -26.73 -0.12 -1.04 16 20 C -0.12 -0.96 5.58 -26.73 -0.15 -1.11 16 21 C 0.07 0.56 7.05 37.16 0.26 0.82 16 22 O -0.58 -4.76 13.66 -35.23 -0.48 -5.24 16 23 C -0.24 -5.23 9.05 -39.21 -0.35 -5.59 16 24 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 26 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 27 H 0.12 2.15 6.43 -52.49 -0.34 1.82 16 28 H 0.41 4.75 8.82 -40.82 -0.36 4.39 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.38 1.38 9.12 45.56 0.42 1.79 16 38 H 0.14 2.98 5.71 -52.49 -0.30 2.68 16 LS Contribution 326.69 15.07 4.92 4.92 Total: -1.00 -33.23 326.69 -6.17 -39.40 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.23 Total: 6.88 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -2.31 Total: -13.59 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.72 Total: -34.27 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.41 Total: -19.98 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.86 Total: 16.64 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.23 -6.17 -39.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092171908.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.169 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds