Wall clock time and date at job start Tue Mar 31 2020 00:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35910 * 117.00055 * 2 1 4 4 C 1.38483 * 119.94761 * 359.97438 * 3 2 1 5 5 C 1.39590 * 119.89802 * 180.02562 * 4 3 2 6 6 C 1.47755 * 120.09664 * 179.97438 * 5 4 3 7 7 O 1.21585 * 119.99950 * 320.36787 * 6 5 4 8 8 N 1.34782 * 119.99868 * 140.37818 * 6 5 4 9 9 C 1.46502 * 119.99838 * 3.92622 * 8 6 5 10 10 C 1.36863 * 119.99696 * 183.92763 * 8 6 5 11 11 H 1.08002 * 120.00320 * 20.06949 * 10 8 6 12 12 C 1.39047 * 119.99988 * 200.06658 * 10 8 6 13 13 N 1.31370 * 119.99814 * 17.20566 * 12 10 8 14 14 Si 1.86805 * 120.00323 * 197.20414 * 12 10 8 15 15 H 1.48501 * 109.46968 * 94.98348 * 14 12 10 16 16 H 1.48498 * 109.47118 * 214.98072 * 14 12 10 17 17 H 1.48497 * 109.46896 * 334.98479 * 14 12 10 18 18 C 1.39586 * 119.80194 * 359.97438 * 5 4 3 19 19 C 1.38487 * 119.89640 * 0.02562 * 18 5 4 20 20 O 1.35912 * 119.94540 * 180.02562 * 19 18 5 21 21 C 1.42901 * 117.00270 * 359.97438 * 20 19 18 22 22 C 1.38749 * 120.10426 * 359.72597 * 19 18 5 23 23 C 1.50687 * 119.90240 * 180.27286 * 22 19 18 24 24 H 1.08998 * 109.47145 * 300.00278 * 1 2 3 25 25 H 1.09006 * 109.47018 * 60.00183 * 1 2 3 26 26 H 1.09002 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.05287 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47265 * 84.92001 * 9 8 6 29 29 H 1.08999 * 109.46760 * 204.91554 * 9 8 6 30 30 H 1.09001 * 109.47137 * 324.91469 * 9 8 6 31 31 H 0.97004 * 119.99958 * 180.02562 * 13 12 10 32 32 H 1.08003 * 120.05030 * 179.97438 * 18 5 4 33 33 H 1.08996 * 109.46859 * 60.00046 * 21 20 19 34 34 H 1.09001 * 109.47240 * 180.02562 * 21 20 19 35 35 H 1.09007 * 109.46671 * 300.00344 * 21 20 19 36 36 H 1.09003 * 109.47314 * 270.27310 * 23 22 19 37 37 H 1.09004 * 109.47257 * 30.27543 * 23 22 19 38 38 H 1.09001 * 109.47127 * 150.27459 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2907 2.3717 -0.0005 5 6 1.9255 3.6149 -0.0011 6 6 1.1240 4.8561 -0.0022 7 8 0.1132 4.9265 -0.6743 8 7 1.5134 5.9105 0.7416 9 6 2.7756 5.8573 1.4834 10 6 0.7296 7.0307 0.8040 11 1 -0.3174 6.9723 0.5455 12 6 1.2812 8.2440 1.2002 13 7 2.5846 8.4079 1.1885 14 14 0.1691 9.6410 1.7489 15 1 0.0416 9.6203 3.2283 16 1 0.7541 10.9369 1.3206 17 1 -1.1726 9.4762 1.1341 18 6 3.3198 3.6819 -0.0005 19 6 4.0669 2.5159 0.0000 20 8 5.4245 2.5799 0.0011 21 6 6.0125 3.8823 0.0010 22 6 3.4317 1.2823 0.0057 23 6 4.2491 0.0164 0.0125 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 0.2122 2.3152 -0.0014 28 1 3.5954 6.1491 0.8270 29 1 2.7279 6.5409 2.3310 30 1 2.9426 4.8423 1.8441 31 1 2.9695 9.2543 1.4653 32 1 3.8151 4.6417 -0.0014 33 1 5.6930 4.4252 0.8905 34 1 7.0987 3.7906 0.0014 35 1 5.6944 4.4246 -0.8895 36 1 4.4509 -0.2913 -1.0135 37 1 5.1915 0.1952 0.5303 38 1 3.6961 -0.7704 0.5257 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299535664.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:21 Heat of formation + Delta-G solvation = -67.811495 kcal Electronic energy + Delta-G solvation = -22288.425168 eV Core-core repulsion = 18904.721726 eV Total energy + Delta-G solvation = -3383.703442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.45592 -38.80897 -38.44911 -35.84745 -34.78587 -32.69740 -31.56405 -29.30861 -27.75525 -27.43297 -26.70256 -26.10331 -24.43459 -21.80075 -21.51176 -19.87489 -17.72524 -16.98958 -16.68639 -16.15849 -15.88291 -15.55753 -15.32633 -15.28682 -14.83267 -14.17457 -14.00012 -13.84818 -13.19056 -13.09314 -12.62287 -12.41842 -12.26305 -11.88920 -11.71041 -11.61666 -11.50278 -11.40791 -11.31339 -11.08395 -10.86376 -10.64134 -10.51631 -10.39758 -10.10001 -9.10442 -8.55241 -7.93759 -7.86277 -7.77172 -6.48151 -3.94773 1.41564 1.73861 3.07442 3.09726 3.19348 3.25127 3.64343 3.83435 4.03553 4.27263 4.70165 5.01619 5.15889 5.18284 5.19899 5.23556 5.29304 5.37103 5.47270 5.55737 5.58187 5.66870 5.74664 5.88466 5.91291 5.93422 6.26140 6.38193 6.43892 6.62043 6.70328 6.73917 6.83536 7.06376 7.44855 7.47253 7.62283 8.00651 8.37094 9.06288 9.28350 9.87572 10.56428 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.020482 B = 0.005516 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.722815 B = 5074.544220 C = 6242.644211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.314 6.314 3 C 0.150 3.850 4 C -0.198 4.198 5 C -0.020 4.020 6 C 0.470 3.530 7 O -0.586 6.586 8 N -0.427 5.427 9 C 0.104 3.896 10 C -0.305 4.305 11 H 0.103 0.897 12 C 0.032 3.968 13 N -0.872 5.872 14 Si 0.928 3.072 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.219 4.219 19 C 0.152 3.848 20 O -0.314 6.314 21 C 0.025 3.975 22 C -0.152 4.152 23 C -0.089 4.089 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.036 0.964 31 H 0.270 0.730 32 H 0.145 0.855 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.181 -11.682 1.059 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.228 6.228 3 C 0.105 3.895 4 C -0.218 4.218 5 C -0.024 4.024 6 C 0.259 3.741 7 O -0.472 6.472 8 N -0.143 5.143 9 C -0.040 4.040 10 C -0.433 4.433 11 H 0.121 0.879 12 C -0.173 4.173 13 N -0.510 5.510 14 Si 0.755 3.245 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.191 1.191 18 C -0.238 4.238 19 C 0.107 3.893 20 O -0.227 6.227 21 C -0.070 4.070 22 C -0.153 4.153 23 C -0.145 4.145 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.115 0.885 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.162 0.838 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.053 -11.783 0.804 12.846 hybrid contribution -0.597 1.360 0.277 1.511 sum 4.456 -10.423 1.081 11.387 Atomic orbital electron populations 1.23063 0.78339 1.03452 1.01994 1.85986 1.21306 1.26588 1.88878 1.18212 0.90756 0.83997 0.96531 1.21132 1.00379 0.90705 1.09604 1.19813 0.92777 0.94245 0.95546 1.17900 0.87750 0.84268 0.84137 1.90609 1.28008 1.83534 1.45061 1.43519 1.19331 1.12949 1.38532 1.21828 0.86389 0.98300 0.97465 1.19762 0.93953 0.85486 1.44124 0.87882 1.25372 0.96188 0.98510 0.97204 1.70011 1.10370 1.26126 1.44533 0.85870 0.80222 0.79546 0.78907 1.20240 1.20804 1.19131 1.21747 0.94085 0.98242 1.09764 1.18252 0.82284 0.92565 0.96221 1.85985 1.17018 1.30959 1.88781 1.23101 0.98498 0.83219 1.02184 1.18254 0.90426 0.93976 1.12671 1.20346 0.98715 0.93718 1.01765 0.92506 0.92337 0.88463 0.84835 0.93012 0.90356 0.94572 0.91957 0.83772 0.92137 0.88376 0.92418 0.92066 0.91609 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.63 9.52 -19.46 -0.19 -4.82 16 3 C 0.15 2.55 6.65 -39.30 -0.26 2.29 16 4 C -0.20 -3.79 8.62 -38.99 -0.34 -4.12 16 5 C -0.02 -0.43 5.20 -105.00 -0.55 -0.97 16 6 C 0.47 12.12 7.29 -12.37 -0.09 12.03 16 7 O -0.59 -16.97 16.61 5.29 0.09 -16.88 16 8 N -0.43 -11.12 3.01 -123.31 -0.37 -11.49 16 9 C 0.10 2.32 7.20 59.85 0.43 2.75 16 10 C -0.31 -8.47 9.28 -15.01 -0.14 -8.61 16 11 H 0.10 2.99 7.43 -52.49 -0.39 2.60 16 12 C 0.03 0.82 4.96 -17.45 -0.09 0.73 16 13 N -0.87 -22.53 10.84 55.50 0.60 -21.93 16 14 Si 0.93 20.21 29.59 -169.99 -5.03 15.18 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 C -0.22 -4.14 6.59 -38.99 -0.26 -4.39 16 19 C 0.15 2.59 6.65 -39.30 -0.26 2.33 16 20 O -0.31 -4.70 9.52 -19.46 -0.19 -4.88 16 21 C 0.03 0.30 9.81 101.05 0.99 1.29 16 22 C -0.15 -2.50 5.91 -104.25 -0.62 -3.12 16 23 C -0.09 -1.19 9.55 36.00 0.34 -0.85 16 24 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 25 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 26 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.13 2.48 6.28 -52.49 -0.33 2.15 16 28 H 0.05 1.14 6.60 -51.93 -0.34 0.80 16 29 H 0.08 1.83 6.55 -51.93 -0.34 1.49 16 30 H 0.04 0.72 5.95 -51.93 -0.31 0.41 16 31 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 32 H 0.14 2.69 3.57 -52.48 -0.19 2.51 16 33 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.84 7.52 -51.93 -0.39 0.44 16 38 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -31.76 312.72 -4.88 -36.63 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.67 Total: 2.81 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: 0.16 Total: 0.66 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.23 Total: -33.42 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -0.28 Total: -26.58 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.76 -4.88 -36.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299535664.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.177 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds