Wall clock time and date at job start Tue Mar 31 2020 01:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.39805 * 2 1 4 4 C 1.38313 * 119.45983 * 180.29620 * 3 2 1 5 5 C 1.50703 * 120.82596 * 179.70922 * 4 3 2 6 6 C 1.40052 * 118.34709 * 359.43805 * 4 3 2 7 7 C 1.47381 * 120.60533 * 180.25173 * 6 4 3 8 8 O 1.21510 * 120.00339 * 89.99964 * 7 6 4 9 9 O 1.34753 * 119.99875 * 269.99998 * 7 6 4 10 10 C 1.45202 * 116.99771 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46827 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47090 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99525 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00186 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47145 * 89.99810 * 17 15 13 19 19 H 1.48501 * 109.47278 * 209.99543 * 17 15 13 20 20 H 1.48497 * 109.47401 * 329.99650 * 17 15 13 21 21 C 1.40335 * 118.79369 * 0.27245 * 6 4 3 22 22 O 1.35416 * 119.80923 * 180.02562 * 21 6 4 23 23 N 1.31869 * 119.40231 * 179.72257 * 2 1 3 24 24 H 1.08995 * 109.47747 * 270.28113 * 1 2 3 25 25 H 1.09002 * 109.47204 * 30.28023 * 1 2 3 26 26 H 1.09005 * 109.47209 * 150.27259 * 1 2 3 27 27 H 1.07996 * 120.26736 * 0.03118 * 3 2 1 28 28 H 1.09002 * 109.47152 * 269.72174 * 5 4 3 29 29 H 1.09001 * 109.46980 * 149.72274 * 5 4 3 30 30 H 1.09004 * 109.47113 * 29.72255 * 5 4 3 31 31 H 1.08995 * 109.47645 * 300.00115 * 10 9 7 32 32 H 1.09001 * 109.47105 * 60.00321 * 10 9 7 33 33 H 1.09004 * 109.47066 * 300.00259 * 11 10 9 34 34 H 1.08997 * 109.47149 * 60.00721 * 11 10 9 35 35 H 1.08995 * 109.47435 * 299.99960 * 12 11 10 36 36 H 1.09001 * 109.47406 * 60.00222 * 12 11 10 37 37 H 0.97001 * 119.99979 * 180.02562 * 16 15 13 38 38 H 0.96699 * 114.00102 * 89.99491 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1862 1.2056 0.0000 4 6 3.5693 1.2071 -0.0062 5 6 4.3402 2.5021 -0.0130 6 6 4.2357 -0.0247 -0.0003 7 6 5.7084 -0.0811 -0.0009 8 8 6.3163 -0.0989 1.0511 9 8 6.3809 -0.1130 -1.1682 10 6 7.8300 -0.1675 -1.0928 11 6 8.4134 -0.1980 -2.5069 12 6 9.9402 -0.2561 -2.4274 13 6 10.5149 -0.2868 -3.8203 14 1 9.8569 -0.2663 -4.6764 15 6 11.8806 -0.3408 -4.0015 16 7 12.6819 -0.3652 -2.9589 17 14 12.5929 -0.3781 -5.7279 18 1 12.8360 1.0111 -6.1932 19 1 13.8745 -1.1283 -5.7186 20 1 11.6347 -1.0465 -6.6445 21 6 3.4756 -1.2043 0.0059 22 8 4.0987 -2.4066 0.0122 23 7 2.1543 -1.1488 0.0056 24 1 -0.3634 0.0050 1.0276 25 1 -0.3634 0.8875 -0.5182 26 1 -0.3634 -0.8925 -0.5096 27 1 1.6408 2.1377 0.0005 28 1 4.5257 2.8092 -1.0423 29 1 5.2909 2.3616 0.5012 30 1 3.7614 3.2721 0.4972 31 1 8.1998 0.7119 -0.5656 32 1 8.1323 -1.0668 -0.5560 33 1 8.0435 -1.0777 -3.0337 34 1 8.1112 0.7010 -3.0440 35 1 10.3104 0.6233 -1.9005 36 1 10.2422 -1.1553 -1.8904 37 1 13.6427 -0.4029 -3.0865 38 1 4.2797 -2.7512 0.8974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755686127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:26 Heat of formation + Delta-G solvation = -112.572327 kcal Electronic energy + Delta-G solvation = -20937.532506 eV Core-core repulsion = 17551.888089 eV Total energy + Delta-G solvation = -3385.644417 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26242 -39.77943 -37.67069 -36.48906 -34.60248 -33.97521 -32.17663 -31.68243 -29.03755 -27.96255 -26.97662 -24.17005 -23.19736 -22.17631 -20.85139 -20.34111 -18.74528 -17.95660 -17.63358 -16.91881 -16.14052 -15.96145 -15.86285 -14.81979 -14.47520 -14.42954 -14.00197 -13.67939 -13.55529 -13.36722 -13.11072 -12.77442 -12.35814 -12.26839 -12.16778 -12.11026 -11.95600 -11.89125 -10.97790 -10.85830 -10.65857 -10.55793 -10.42254 -9.95426 -9.81067 -9.73647 -9.50938 -9.19955 -9.14440 -8.39119 -6.03933 -4.06904 0.40020 0.73888 2.06497 2.72311 2.99909 3.30997 3.33628 3.37223 3.41165 4.09352 4.15278 4.42664 4.59329 4.61421 4.83304 4.94600 5.03289 5.17357 5.20572 5.25036 5.32127 5.45923 5.54105 5.55779 5.59214 5.69018 5.75864 5.97674 6.08032 6.39756 6.52750 6.77394 6.96686 7.11917 7.50339 7.59482 7.70362 7.76231 7.94394 8.35484 8.99282 9.57454 11.07554 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.002984 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.070151 B = 9382.173801 C = 9435.086540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.187 4.187 4 C 0.019 3.981 5 C -0.129 4.129 6 C -0.182 4.182 7 C 0.524 3.476 8 O -0.500 6.500 9 O -0.344 6.344 10 C 0.066 3.934 11 C -0.109 4.109 12 C 0.024 3.976 13 C -0.521 4.521 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.365 3.635 22 O -0.473 6.473 23 N -0.505 5.505 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.175 3.983 8.555 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.034 3.966 3 C -0.207 4.207 4 C 0.012 3.988 5 C -0.185 4.185 6 C -0.187 4.187 7 C 0.365 3.635 8 O -0.389 6.389 9 O -0.260 6.260 10 C -0.006 4.006 11 C -0.147 4.147 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.534 5.534 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.185 3.815 22 O -0.281 6.281 23 N -0.225 5.225 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.166 0.834 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.071 0.929 38 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -24.179 3.198 8.299 25.763 hybrid contribution 1.230 0.493 -0.317 1.362 sum -22.949 3.691 7.983 24.577 Atomic orbital electron populations 1.20815 0.87901 1.04126 1.03591 1.21242 0.97117 0.87021 0.91218 1.21774 0.93308 0.99791 1.05797 1.20277 0.93839 0.93983 0.90742 1.21011 1.00331 0.92948 1.04232 1.20184 0.91677 0.94743 1.12053 1.20597 0.87673 0.72425 0.82783 1.90874 1.69766 1.45363 1.32891 1.86681 1.24321 1.82317 1.32686 1.23601 0.73141 1.02270 1.01628 1.21780 0.99226 1.02091 0.91565 1.19054 0.86736 0.97689 0.97785 1.21171 0.91639 1.50887 0.92255 0.92415 1.25026 0.97230 0.95188 0.97016 1.69964 1.03580 1.50513 1.29344 0.86542 0.78530 0.78089 0.84554 1.20615 1.21177 1.19786 1.18949 0.86358 0.84211 0.91955 1.84737 1.76592 1.32514 1.34231 1.67094 1.08702 1.30386 1.16337 0.89766 0.90039 0.89957 0.83429 0.88971 0.90555 0.89767 0.91342 0.91246 0.92006 0.92121 0.96221 0.96170 0.92883 0.73275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 10.16 36.00 0.37 -0.24 16 2 C 0.17 1.63 6.78 -82.53 -0.56 1.07 16 3 C -0.19 -1.60 9.41 -39.50 -0.37 -1.97 16 4 C 0.02 0.21 5.95 -103.91 -0.62 -0.41 16 5 C -0.13 -1.17 9.69 36.01 0.35 -0.82 16 6 C -0.18 -2.52 5.78 -104.71 -0.61 -3.12 16 7 C 0.52 8.61 5.56 34.45 0.19 8.80 16 8 O -0.50 -9.11 16.90 -19.27 -0.33 -9.43 16 9 O -0.34 -6.17 10.23 -40.64 -0.42 -6.59 16 10 C 0.07 1.25 5.48 37.16 0.20 1.46 16 11 C -0.11 -2.31 5.53 -26.73 -0.15 -2.46 16 12 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 13 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 17 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.36 4.93 7.77 -16.59 -0.13 4.80 16 22 O -0.47 -6.13 13.02 -17.94 -0.23 -6.36 16 23 N -0.50 -6.26 10.28 -9.19 -0.09 -6.35 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 0.83 7.19 -51.93 -0.37 0.45 16 30 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.41 3.35 9.06 45.56 0.41 3.76 16 LS Contribution 336.02 15.07 5.06 5.06 Total: -1.00 -34.43 336.02 -6.73 -41.16 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -4.57 Total: -2.01 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.87 Total: -5.95 kcal Atomic # 7 Polarization: -33.17 SS G_CDS: 0.64 Total: -32.53 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.97 Total: -22.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.43 -6.73 -41.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755686127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.410 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds