Wall clock time and date at job start Tue Mar 31 2020 01:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38383 * 119.39805 * 2 1 4 4 C 1.38313 * 119.45983 * 180.29620 * 3 2 1 5 5 C 1.50703 * 120.82596 * 179.70922 * 4 3 2 6 6 C 1.40052 * 118.34709 * 359.43805 * 4 3 2 7 7 C 1.47381 * 120.60533 * 180.25173 * 6 4 3 8 8 O 1.21510 * 120.00339 * 89.99964 * 7 6 4 9 9 O 1.34753 * 119.99875 * 269.99998 * 7 6 4 10 10 C 1.45202 * 116.99771 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46919 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46827 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47090 * 179.97438 * 12 11 10 14 14 H 1.08000 * 119.99525 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00186 * 180.02562 * 13 12 11 16 16 N 1.31513 * 120.00174 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99926 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47145 * 89.99810 * 17 15 13 19 19 H 1.48501 * 109.47278 * 209.99543 * 17 15 13 20 20 H 1.48497 * 109.47401 * 329.99650 * 17 15 13 21 21 C 1.40335 * 118.79369 * 0.27245 * 6 4 3 22 22 O 1.35416 * 119.80923 * 180.02562 * 21 6 4 23 23 N 1.31869 * 119.40231 * 179.72257 * 2 1 3 24 24 H 1.08995 * 109.47747 * 270.28113 * 1 2 3 25 25 H 1.09002 * 109.47204 * 30.28023 * 1 2 3 26 26 H 1.09005 * 109.47209 * 150.27259 * 1 2 3 27 27 H 1.07996 * 120.26736 * 0.03118 * 3 2 1 28 28 H 1.09002 * 109.47152 * 269.72174 * 5 4 3 29 29 H 1.09001 * 109.46980 * 149.72274 * 5 4 3 30 30 H 1.09004 * 109.47113 * 29.72255 * 5 4 3 31 31 H 1.08995 * 109.47645 * 300.00115 * 10 9 7 32 32 H 1.09001 * 109.47105 * 60.00321 * 10 9 7 33 33 H 1.09004 * 109.47066 * 300.00259 * 11 10 9 34 34 H 1.08997 * 109.47149 * 60.00721 * 11 10 9 35 35 H 1.08995 * 109.47435 * 299.99960 * 12 11 10 36 36 H 1.09001 * 109.47406 * 60.00222 * 12 11 10 37 37 H 0.97001 * 119.99979 * 180.02562 * 16 15 13 38 38 H 0.96699 * 114.00102 * 89.99491 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1862 1.2056 0.0000 4 6 3.5693 1.2071 -0.0062 5 6 4.3402 2.5021 -0.0130 6 6 4.2357 -0.0247 -0.0003 7 6 5.7084 -0.0811 -0.0009 8 8 6.3163 -0.0989 1.0511 9 8 6.3809 -0.1130 -1.1682 10 6 7.8300 -0.1675 -1.0928 11 6 8.4134 -0.1980 -2.5069 12 6 9.9402 -0.2561 -2.4274 13 6 10.5149 -0.2868 -3.8203 14 1 9.8569 -0.2663 -4.6764 15 6 11.8806 -0.3408 -4.0015 16 7 12.6819 -0.3652 -2.9589 17 14 12.5929 -0.3781 -5.7279 18 1 12.8360 1.0111 -6.1932 19 1 13.8745 -1.1283 -5.7186 20 1 11.6347 -1.0465 -6.6445 21 6 3.4756 -1.2043 0.0059 22 8 4.0987 -2.4066 0.0122 23 7 2.1543 -1.1488 0.0056 24 1 -0.3634 0.0050 1.0276 25 1 -0.3634 0.8875 -0.5182 26 1 -0.3634 -0.8925 -0.5096 27 1 1.6408 2.1377 0.0005 28 1 4.5257 2.8092 -1.0423 29 1 5.2909 2.3616 0.5012 30 1 3.7614 3.2721 0.4972 31 1 8.1998 0.7119 -0.5656 32 1 8.1323 -1.0668 -0.5560 33 1 8.0435 -1.0777 -3.0337 34 1 8.1112 0.7010 -3.0440 35 1 10.3104 0.6233 -1.9005 36 1 10.2422 -1.1553 -1.8904 37 1 13.6427 -0.4029 -3.0865 38 1 4.2797 -2.7512 0.8974 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755686127.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:25 Heat of formation + Delta-G solvation = -137.105975 kcal Electronic energy + Delta-G solvation = -20938.596365 eV Core-core repulsion = 17551.888089 eV Total energy + Delta-G solvation = -3386.708276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.26215 -40.98771 -38.56556 -37.93323 -35.97981 -35.40129 -33.71841 -32.89325 -30.01156 -28.92345 -28.46273 -25.59845 -24.55661 -23.20209 -22.22865 -21.85752 -19.64483 -19.21848 -18.70127 -18.55170 -17.87857 -17.29534 -16.80459 -16.50801 -15.63043 -15.55203 -15.18300 -14.79804 -14.33515 -14.27718 -14.08173 -14.01343 -13.83292 -13.77689 -13.28534 -13.07292 -12.91330 -12.84814 -12.70789 -12.54875 -12.46092 -12.15235 -12.07478 -11.55216 -11.48966 -11.28554 -10.76104 -10.66588 -10.58765 -9.98023 -8.23343 -6.34958 -0.45721 -0.06424 0.78126 1.40099 1.42086 1.47405 1.54064 2.20863 2.40120 2.48443 3.10542 3.27515 3.45754 3.48453 3.83493 3.93933 3.97362 4.08417 4.17916 4.34216 4.44970 4.49429 4.59355 4.74263 4.75776 4.82523 4.92607 4.96600 5.00140 5.03558 5.15276 5.24909 5.45751 5.46767 5.60558 5.77825 6.16821 6.31022 6.42426 6.69768 6.80368 7.34578 8.88926 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031310 B = 0.002984 C = 0.002967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.070151 B = 9382.173801 C = 9435.086540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.169 3.831 3 C -0.172 4.172 4 C 0.014 3.986 5 C -0.128 4.128 6 C -0.213 4.213 7 C 0.530 3.470 8 O -0.525 6.525 9 O -0.350 6.350 10 C 0.076 3.924 11 C -0.094 4.094 12 C 0.028 3.972 13 C -0.544 4.544 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.969 3.031 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.263 1.263 21 C 0.351 3.649 22 O -0.491 6.491 23 N -0.526 5.526 24 H 0.101 0.899 25 H 0.111 0.889 26 H 0.075 0.925 27 H 0.193 0.807 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.000 1.000 36 H -0.003 1.003 37 H 0.265 0.735 38 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.602 5.390 7.650 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.031 3.969 3 C -0.191 4.191 4 C 0.006 3.994 5 C -0.184 4.184 6 C -0.218 4.218 7 C 0.373 3.627 8 O -0.414 6.414 9 O -0.266 6.266 10 C 0.002 3.998 11 C -0.132 4.132 12 C -0.010 4.010 13 C -0.582 4.582 14 H 0.082 0.918 15 C -0.198 4.198 16 N -0.573 5.573 17 Si 0.793 3.207 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.187 1.187 21 C 0.172 3.828 22 O -0.302 6.302 23 N -0.247 5.247 24 H 0.120 0.880 25 H 0.130 0.870 26 H 0.094 0.906 27 H 0.210 0.790 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.137 0.863 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.074 0.926 38 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -26.630 4.603 7.405 28.021 hybrid contribution 1.863 0.072 0.032 1.864 sum -24.767 4.675 7.437 26.279 Atomic orbital electron populations 1.20975 0.84897 1.05309 1.05001 1.22057 0.99013 0.86613 0.89183 1.22226 0.92179 1.01266 1.03389 1.20627 0.95121 0.93412 0.90200 1.21085 0.99577 0.93062 1.04712 1.20199 0.89670 0.96446 1.15523 1.21090 0.88752 0.71065 0.81772 1.90846 1.70620 1.46495 1.33457 1.86662 1.23357 1.82703 1.33897 1.23267 0.74260 1.02220 1.00017 1.21473 0.96118 1.02473 0.93087 1.18924 0.89924 0.95614 0.96501 1.21608 0.92347 1.50933 0.93337 0.91818 1.25998 0.97691 0.94534 1.01592 1.70095 1.04016 1.51313 1.31874 0.85388 0.77717 0.78554 0.79046 1.19550 1.20730 1.18717 1.19073 0.86972 0.84051 0.92725 1.84676 1.76859 1.32831 1.35818 1.67191 1.07973 1.32094 1.17428 0.88036 0.87039 0.90581 0.78952 0.88415 0.92982 0.86263 0.91074 0.91737 0.91932 0.91279 0.98115 0.98463 0.92614 0.71635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.16 71.23 0.72 -0.07 16 2 C 0.17 2.75 6.78 42.59 0.29 3.04 16 3 C -0.17 -2.33 9.41 22.32 0.21 -2.12 16 4 C 0.01 0.28 5.95 -19.41 -0.12 0.16 16 5 C -0.13 -2.08 9.69 71.24 0.69 -1.39 16 6 C -0.21 -5.91 5.78 -19.92 -0.12 -6.03 16 7 C 0.53 17.88 5.56 70.23 0.39 18.27 16 8 O -0.52 -19.77 16.90 19.80 0.33 -19.43 16 9 O -0.35 -12.81 10.23 -56.64 -0.58 -13.38 16 10 C 0.08 2.94 5.48 71.98 0.39 3.33 16 11 C -0.09 -4.04 5.53 30.60 0.17 -3.87 16 12 C 0.03 1.47 4.97 29.85 0.15 1.62 16 13 C -0.54 -31.20 9.11 25.60 0.23 -30.97 16 14 H 0.06 3.49 7.74 -2.91 -0.02 3.46 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.93 -57.04 13.29 21.44 0.28 -56.76 16 17 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 18 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.35 9.55 7.77 85.14 0.66 10.22 16 22 O -0.49 -13.23 13.02 -87.11 -1.13 -14.36 16 23 N -0.53 -12.56 10.28 -296.01 -3.04 -15.61 16 24 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 25 H 0.11 0.21 8.07 -2.39 -0.02 0.20 16 26 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.19 0.82 8.06 -2.91 -0.02 0.79 16 28 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.11 7.19 -2.39 -0.02 1.09 16 30 H 0.12 1.05 8.10 -2.38 -0.02 1.03 16 31 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 33 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 36 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 37 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 38 H 0.42 7.48 9.06 -74.06 -0.67 6.81 16 Total: -1.00 -75.96 336.02 2.43 -73.53 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.40 Total: 6.99 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 4.14 Total: -7.36 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -2.76 Total: -72.36 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.38 Total: -47.18 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -75.96 2.43 -73.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755686127.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.578 kcal (2) G-P(sol) polarization free energy of solvation -75.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds