Wall clock time and date at job start Tue Mar 31 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86803 * 120.00023 * 2 1 4 4 H 1.48496 * 109.47194 * 85.19118 * 3 2 1 5 5 H 1.48505 * 109.46937 * 205.18934 * 3 2 1 6 6 H 1.48498 * 109.47234 * 325.19077 * 3 2 1 7 7 C 1.39942 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00077 * 196.30937 * 7 2 1 9 9 C 1.41400 * 120.00205 * 16.29869 * 7 2 1 10 10 C 1.40732 * 120.23872 * 26.16263 * 9 7 2 11 11 C 1.37600 * 119.74097 * 180.02562 * 10 9 7 12 12 C 1.38653 * 120.24898 * 0.02562 * 11 10 9 13 13 C 1.38606 * 120.50471 * 0.02562 * 12 11 10 14 14 C 1.37645 * 120.24649 * 359.65965 * 13 12 11 15 15 C 1.50703 * 120.13007 * 180.32491 * 14 13 12 16 16 C 1.50692 * 109.47000 * 265.30719 * 15 14 13 17 17 O 1.21283 * 120.00716 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99931 * 180.02562 * 16 15 14 19 19 C 1.46503 * 120.00051 * 180.02562 * 18 16 15 20 20 C 1.53001 * 109.47043 * 154.99895 * 19 18 16 21 21 O 1.42900 * 109.47460 * 64.99585 * 20 19 18 22 22 C 1.53002 * 109.47149 * 274.99495 * 19 18 16 23 23 O 1.42905 * 109.46901 * 295.00385 * 22 19 18 24 24 H 0.97002 * 120.00001 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.13238 * 359.97135 * 10 9 7 26 26 H 1.07998 * 119.87209 * 179.97438 * 11 10 9 27 27 H 1.08002 * 119.74769 * 179.97438 * 12 11 10 28 28 H 1.07994 * 119.87846 * 179.97438 * 13 12 11 29 29 H 1.09000 * 109.46646 * 25.30567 * 15 14 13 30 30 H 1.08997 * 109.47028 * 145.30773 * 15 14 13 31 31 H 0.97002 * 119.99800 * 359.97438 * 18 16 15 32 32 H 1.08996 * 109.47114 * 34.99785 * 19 18 16 33 33 H 1.09002 * 109.47071 * 184.99857 * 20 19 18 34 34 H 1.09005 * 109.46896 * 304.99579 * 20 19 18 35 35 H 0.96694 * 114.00374 * 179.97438 * 21 20 19 36 36 H 1.09000 * 109.46294 * 54.99836 * 22 19 18 37 37 H 1.08998 * 109.46833 * 174.99808 * 22 19 18 38 38 H 0.96703 * 113.99340 * 180.02562 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3881 2.1051 1.3951 5 1 3.5870 1.4129 -0.5959 6 1 1.4942 2.6212 -0.7992 7 6 2.0079 -1.2119 -0.0005 8 1 3.0553 -1.2309 0.2621 9 6 1.3436 -2.4118 -0.3447 10 6 0.2148 -2.3810 -1.1847 11 6 -0.4242 -3.5547 -1.5126 12 6 0.0398 -4.7643 -1.0184 13 6 1.1500 -4.8063 -0.1896 14 6 1.8087 -3.6454 0.1464 15 6 3.0198 -3.6949 1.0419 16 6 2.6000 -3.4515 2.4685 17 8 1.4323 -3.2565 2.7323 18 7 3.5222 -3.4495 3.4514 19 6 3.1139 -3.2134 4.8385 20 6 4.1334 -3.8497 5.7855 21 8 5.3923 -3.1885 5.6441 22 6 3.0450 -1.7075 5.1005 23 8 4.3539 -1.1446 4.9905 24 1 -0.4850 0.8401 0.0004 25 1 -0.1491 -1.4399 -1.5696 26 1 -1.2908 -3.5336 -2.1567 27 1 -0.4681 -5.6806 -1.2807 28 1 1.5024 -5.7540 0.1899 29 1 3.4896 -4.6754 0.9637 30 1 3.7296 -2.9264 0.7359 31 1 4.4561 -3.6051 3.2405 32 1 2.1331 -3.6572 5.0091 33 1 3.7848 -3.7515 6.8136 34 1 4.2478 -4.9055 5.5398 35 1 6.0878 -3.5405 6.2163 36 1 2.3861 -1.2412 4.3681 37 1 2.6564 -1.5308 6.1035 38 1 4.3858 -0.1905 5.1452 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755686391.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:08 Heat of formation + Delta-G solvation = -145.222832 kcal Electronic energy + Delta-G solvation = -22187.834526 eV Core-core repulsion = 18800.774277 eV Total energy + Delta-G solvation = -3387.060249 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.88841 -39.35895 -38.32395 -36.81230 -35.47587 -35.09417 -33.47917 -31.38776 -31.02939 -28.27452 -26.81627 -26.62151 -22.91539 -22.73587 -21.45292 -20.95869 -19.08907 -18.75259 -17.69167 -17.64159 -17.41766 -17.14323 -16.30009 -16.23807 -15.54557 -15.49829 -15.04946 -14.78936 -14.43073 -14.36436 -14.29142 -13.57387 -13.33055 -13.26616 -13.03336 -12.90662 -12.77555 -12.58058 -12.47065 -12.11891 -11.96856 -11.31470 -11.17281 -11.03826 -11.01507 -10.67500 -10.60332 -9.92856 -9.21365 -9.16184 -8.57343 -6.26107 1.00304 1.13821 1.33642 1.46759 1.52541 1.90500 2.19833 2.40265 2.81119 3.40728 3.48562 3.75624 3.90566 4.18483 4.30560 4.39672 4.41955 4.48153 4.54568 4.55064 4.62051 4.72571 4.79754 4.86084 4.93095 5.04896 5.25206 5.37488 5.55824 5.65118 5.79703 6.05120 6.15391 6.22692 6.44839 6.72863 6.79434 6.92763 7.00279 7.10559 7.12759 7.53236 8.40259 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.014614 B = 0.006803 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.544517 B = 4114.988729 C = 5560.576146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.031 3.969 3 Si 0.973 3.027 4 H -0.269 1.269 5 H -0.252 1.252 6 H -0.267 1.267 7 C -0.484 4.484 8 H 0.077 0.923 9 C 0.096 3.904 10 C -0.195 4.195 11 C -0.117 4.117 12 C -0.242 4.242 13 C -0.091 4.091 14 C -0.186 4.186 15 C -0.068 4.068 16 C 0.517 3.483 17 O -0.574 6.574 18 N -0.711 5.711 19 C 0.139 3.861 20 C 0.085 3.915 21 O -0.560 6.560 22 C 0.071 3.929 23 O -0.549 6.549 24 H 0.282 0.718 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.412 0.588 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.388 0.612 36 H 0.008 0.992 37 H 0.067 0.933 38 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.702 -4.671 11.092 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.182 4.182 3 Si 0.794 3.206 4 H -0.194 1.194 5 H -0.175 1.175 6 H -0.192 1.192 7 C -0.514 4.514 8 H 0.095 0.905 9 C 0.094 3.906 10 C -0.214 4.214 11 C -0.135 4.135 12 C -0.261 4.261 13 C -0.110 4.110 14 C -0.188 4.188 15 C -0.108 4.108 16 C 0.305 3.695 17 O -0.452 6.452 18 N -0.364 5.364 19 C 0.033 3.967 20 C 0.007 3.993 21 O -0.367 6.367 22 C -0.009 4.009 23 O -0.354 6.354 24 H 0.093 0.907 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.111 0.889 31 H 0.248 0.752 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.236 0.764 36 H 0.026 0.974 37 H 0.085 0.915 38 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.486 -4.662 10.736 15.066 hybrid contribution 0.083 1.214 0.296 1.252 sum 9.570 -3.448 11.032 15.006 Atomic orbital electron populations 1.69935 1.09106 1.29879 1.36904 1.26728 0.95389 1.04470 0.91631 0.85341 0.79625 0.76639 0.79015 1.19411 1.17530 1.19190 1.19679 0.97415 0.91964 1.42308 0.90476 1.17739 0.91438 0.92802 0.88634 1.21284 1.00757 0.96737 1.02651 1.20950 0.98982 0.93398 1.00174 1.20711 1.01482 0.96775 1.07179 1.20733 0.95744 0.96796 0.97677 1.19486 1.01557 0.93465 1.04248 1.20277 0.97166 1.03964 0.89381 1.21121 0.85360 0.74867 0.88172 1.90671 1.20603 1.49627 1.84340 1.45822 1.11113 1.73378 1.06109 1.21289 0.99108 0.94103 0.82159 1.22206 0.84474 0.95072 0.97583 1.86746 1.20406 1.61940 1.67587 1.22394 0.84996 0.94408 0.99083 1.86657 1.27210 1.26791 1.94755 0.90739 0.88639 0.87712 0.86629 0.86448 0.86893 0.88902 0.75172 0.88678 0.90701 0.91841 0.76390 0.97381 0.91454 0.77445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.19 10.98 21.83 0.24 -46.95 16 2 C 0.03 1.68 5.16 85.26 0.44 2.12 16 3 Si 0.97 40.56 29.59 68.60 2.03 42.59 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.48 -26.89 8.46 23.46 0.20 -26.69 16 8 H 0.08 4.07 6.36 -2.91 -0.02 4.05 16 9 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 10 C -0.19 -11.02 8.68 22.73 0.20 -10.83 16 11 C -0.12 -5.87 10.02 22.22 0.22 -5.65 16 12 C -0.24 -11.22 10.05 22.46 0.23 -11.00 16 13 C -0.09 -4.19 9.66 22.22 0.21 -3.98 16 14 C -0.19 -9.17 4.43 -19.40 -0.09 -9.25 16 15 C -0.07 -2.73 5.35 29.10 0.16 -2.57 16 16 C 0.52 21.39 7.79 87.65 0.68 22.07 16 17 O -0.57 -29.86 15.70 -3.04 -0.05 -29.91 16 18 N -0.71 -22.44 5.01 -442.54 -2.22 -24.65 16 19 C 0.14 3.86 2.86 44.99 0.13 3.98 16 20 C 0.09 1.55 6.79 71.98 0.49 2.04 16 21 O -0.56 -10.67 10.95 -126.65 -1.39 -12.06 16 22 C 0.07 2.09 6.85 71.98 0.49 2.58 16 23 O -0.55 -15.23 11.17 -126.65 -1.41 -16.64 16 24 H 0.28 14.60 8.30 -92.71 -0.77 13.83 16 25 H 0.10 5.66 6.23 -2.91 -0.02 5.64 16 26 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 27 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 28 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 29 H 0.11 3.52 8.05 -2.39 -0.02 3.50 16 30 H 0.09 3.66 6.48 -2.39 -0.02 3.65 16 31 H 0.41 11.13 8.38 -92.71 -0.78 10.36 16 32 H 0.10 2.86 7.58 -2.39 -0.02 2.84 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.96 16 35 H 0.39 3.66 9.12 -74.06 -0.68 2.99 16 36 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.38 7.91 9.12 -74.06 -0.68 7.24 16 Total: -1.00 -76.81 322.74 -0.57 -77.38 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -1.01 Total: 42.13 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.24 Total: -31.88 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.98 Total: -71.61 kcal Atomic # 8 Polarization: -55.76 SS G_CDS: -2.85 Total: -58.61 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -76.81 -0.57 -77.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755686391.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.841 kcal (2) G-P(sol) polarization free energy of solvation -76.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds