Wall clock time and date at job start Tue Mar 31 2020 00:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 117.00332 * 2 1 4 4 O 1.20826 * 119.99673 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00041 * 179.97438 * 3 2 1 6 6 H 1.08992 * 109.47397 * 300.00179 * 5 3 2 7 7 C 1.53005 * 109.46931 * 60.00254 * 5 3 2 8 8 O 1.42900 * 109.47358 * 54.99787 * 7 5 3 9 9 N 1.46494 * 109.47112 * 179.97438 * 5 3 2 10 10 C 1.38864 * 120.00396 * 154.99959 * 9 5 3 11 11 C 1.39588 * 119.83675 * 0.02562 * 10 9 5 12 12 C 1.36326 * 120.15932 * 179.97438 * 11 10 9 13 13 C 1.40898 * 119.83416 * 0.02562 * 12 11 10 14 14 C 1.41141 * 120.15429 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00345 * 154.55648 * 14 13 12 16 16 C 1.39862 * 119.99943 * 334.55306 * 14 13 12 17 17 N 1.30909 * 119.99982 * 343.02804 * 16 14 13 18 18 Si 1.86803 * 120.00197 * 163.02908 * 16 14 13 19 19 H 1.48503 * 109.46826 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47259 * 120.00027 * 18 16 14 21 21 H 1.48503 * 109.46824 * 240.00155 * 18 16 14 22 22 C 1.40873 * 119.69077 * 359.97438 * 13 12 11 23 23 C 1.36350 * 119.83433 * 359.72100 * 22 13 12 24 24 C 1.50701 * 119.91840 * 180.29321 * 23 22 13 25 25 H 1.08998 * 109.47654 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47216 * 300.00411 * 1 2 3 27 27 H 1.09006 * 109.46970 * 59.99785 * 1 2 3 28 28 H 1.09007 * 109.46790 * 174.99860 * 7 5 3 29 29 H 1.08998 * 109.46967 * 294.99472 * 7 5 3 30 30 H 0.96694 * 114.00131 * 179.97438 * 8 7 5 31 31 H 0.97009 * 120.00300 * 335.00189 * 9 5 3 32 32 H 1.08004 * 119.91852 * 359.97283 * 11 10 9 33 33 H 1.07998 * 120.07790 * 180.02562 * 12 11 10 34 34 H 0.97004 * 119.99782 * 179.97438 * 17 16 14 35 35 H 1.07999 * 120.07830 * 179.97438 * 22 13 12 36 36 H 1.09001 * 109.47440 * 270.23938 * 24 23 22 37 37 H 1.08998 * 109.47191 * 30.24211 * 24 23 22 38 38 H 1.09006 * 109.47412 * 150.23755 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9557 0.7808 0.8907 7 6 4.1138 0.5809 -1.2484 8 8 3.5137 1.1525 -2.4125 9 7 3.9818 2.6795 -0.0002 10 6 5.2236 3.0367 0.5084 11 6 6.0737 2.0542 1.0189 12 6 7.2944 2.3975 1.5193 13 6 7.6970 3.7477 1.5207 14 6 8.9593 4.1106 2.0376 15 1 9.4455 5.0112 1.6925 16 6 9.5804 3.3042 2.9967 17 7 8.8812 2.4160 3.6571 18 14 11.4075 3.4944 3.3355 19 1 11.9645 4.5590 2.4627 20 1 11.6111 3.8639 4.7593 21 1 12.0995 2.2111 3.0533 22 6 6.8339 4.7337 1.0038 23 6 5.6183 4.3751 0.5008 24 6 4.6962 5.4275 -0.0587 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 5.1947 0.7145 -1.2939 29 1 3.8808 -0.4830 -1.2046 30 1 3.8153 0.7602 -3.2433 31 1 3.3893 3.3604 -0.3559 32 1 5.7634 1.0197 1.0176 33 1 7.9513 1.6362 1.9136 34 1 9.3121 1.8564 4.3220 35 1 7.1360 5.7706 1.0021 36 1 4.0555 5.8092 0.7363 37 1 5.2865 6.2446 -0.4733 38 1 4.0794 4.9901 -0.8438 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163801821.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:10 Heat of formation + Delta-G solvation = -108.949710 kcal Electronic energy + Delta-G solvation = -21772.506000 eV Core-core repulsion = 18387.018671 eV Total energy + Delta-G solvation = -3385.487329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -40.54998 -38.42465 -36.95685 -36.40201 -34.77375 -33.24217 -31.35983 -30.08244 -28.36146 -27.39033 -25.76969 -24.61786 -23.44550 -21.36454 -20.14101 -19.67041 -17.98438 -17.18983 -17.03990 -16.75090 -16.32571 -15.64201 -15.15135 -14.88642 -14.33924 -14.02013 -13.55245 -13.39525 -13.03233 -12.88300 -12.68695 -12.42051 -12.19612 -11.86078 -11.68663 -11.64648 -11.47377 -11.06419 -10.98211 -10.84095 -10.66428 -10.49509 -10.38348 -9.93433 -9.66559 -9.32341 -9.29341 -8.62113 -7.38663 -6.64404 -6.41134 -4.06593 2.27159 2.59843 2.88689 3.03007 3.14668 3.20148 3.30741 4.04393 4.11853 4.29878 4.71768 4.75523 5.00875 5.06883 5.17219 5.38921 5.40280 5.50639 5.71645 5.77236 5.97035 6.09381 6.28236 6.34336 6.40198 6.59744 6.78116 6.91835 7.20339 7.36453 7.48685 7.61876 7.69147 7.76118 7.82973 8.12718 8.25432 8.41975 8.65607 8.76466 9.04016 9.11988 10.35804 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026798 B = 0.004137 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.598842 B = 6766.817337 C = 7150.240569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.501 6.501 5 C 0.177 3.823 6 H 0.123 0.877 7 C 0.063 3.937 8 O -0.568 6.568 9 N -0.735 5.735 10 C 0.094 3.906 11 C -0.167 4.167 12 C -0.124 4.124 13 C 0.078 3.922 14 C -0.465 4.465 15 H 0.073 0.927 16 C 0.075 3.925 17 N -0.808 5.808 18 Si 0.902 3.098 19 H -0.263 1.263 20 H -0.277 1.277 21 H -0.274 1.274 22 C -0.182 4.182 23 C -0.123 4.123 24 C -0.097 4.097 25 H 0.099 0.901 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.378 0.622 31 H 0.399 0.601 32 H 0.088 0.912 33 H 0.119 0.881 34 H 0.276 0.724 35 H 0.093 0.907 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.869 -6.900 -7.097 13.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.276 6.276 3 C 0.310 3.690 4 O -0.387 6.387 5 C 0.068 3.932 6 H 0.140 0.860 7 C -0.016 4.016 8 O -0.373 6.373 9 N -0.374 5.374 10 C -0.002 4.002 11 C -0.189 4.189 12 C -0.144 4.144 13 C 0.075 3.925 14 C -0.497 4.497 15 H 0.091 0.909 16 C -0.140 4.140 17 N -0.435 5.435 18 Si 0.728 3.272 19 H -0.186 1.186 20 H -0.203 1.203 21 H -0.200 1.200 22 C -0.202 4.202 23 C -0.126 4.126 24 C -0.154 4.154 25 H 0.118 0.882 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.224 0.776 31 H 0.236 0.764 32 H 0.106 0.894 33 H 0.137 0.863 34 H 0.086 0.914 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.360 -6.559 -6.406 13.834 hybrid contribution 0.679 -0.117 -0.157 0.706 sum -9.681 -6.676 -6.562 13.467 Atomic orbital electron populations 1.23223 0.76591 1.03414 1.02489 1.86479 1.23246 1.33483 1.84355 1.23888 0.92073 0.81374 0.71656 1.90621 1.66736 1.36421 1.44886 1.20178 0.85900 0.88131 0.99028 0.85963 1.22768 0.98166 0.95502 0.85210 1.86493 1.69521 1.65058 1.16198 1.43663 1.18234 1.03565 1.71912 1.17084 0.86197 0.92865 1.04046 1.20079 0.96435 0.95802 1.06584 1.20908 0.95422 0.96873 1.01216 1.17491 0.92619 0.90904 0.91444 1.19405 1.02256 1.08059 1.19941 0.90886 1.25791 0.99598 0.94124 0.94510 1.69860 1.36637 1.18572 1.18466 0.86361 0.83211 0.79079 0.78584 1.18634 1.20277 1.19977 1.20471 0.93984 0.97629 1.08119 1.18626 0.96697 0.91469 1.05845 1.20511 0.98223 0.97396 0.99285 0.88227 0.92002 0.91996 0.91145 0.92551 0.77574 0.76415 0.89375 0.86312 0.91374 0.88871 0.93061 0.92813 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.36 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.72 10.49 -39.25 -0.41 -5.14 16 3 C 0.47 7.39 6.84 36.00 0.25 7.64 16 4 O -0.50 -9.14 15.59 -18.75 -0.29 -9.43 16 5 C 0.18 2.79 2.57 -69.08 -0.18 2.61 16 6 H 0.12 1.85 6.45 -51.93 -0.33 1.51 16 7 C 0.06 0.84 6.70 37.16 0.25 1.09 16 8 O -0.57 -7.59 13.09 -35.23 -0.46 -8.05 16 9 N -0.73 -13.74 4.94 -53.16 -0.26 -14.00 16 10 C 0.09 2.04 6.63 -83.69 -0.55 1.49 16 11 C -0.17 -3.74 8.74 -39.77 -0.35 -4.08 16 12 C -0.12 -3.15 8.63 -39.26 -0.34 -3.49 16 13 C 0.08 2.08 5.57 -106.79 -0.59 1.48 16 14 C -0.47 -12.47 9.03 -37.87 -0.34 -12.82 16 15 H 0.07 1.90 7.90 -52.49 -0.41 1.49 16 16 C 0.07 1.90 5.15 -17.34 -0.09 1.81 16 17 N -0.81 -21.10 10.96 55.54 0.61 -20.49 16 18 Si 0.90 19.00 29.59 -169.99 -5.03 13.97 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.18 -4.46 9.37 -39.27 -0.37 -4.83 16 23 C -0.12 -2.74 5.86 -104.82 -0.61 -3.36 16 24 C -0.10 -1.81 9.55 36.01 0.34 -1.46 16 25 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 28 H 0.07 0.99 7.77 -51.93 -0.40 0.59 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.38 3.20 9.12 45.56 0.42 3.62 16 31 H 0.40 7.63 5.75 -40.82 -0.23 7.39 16 32 H 0.09 1.71 6.15 -52.48 -0.32 1.39 16 33 H 0.12 3.12 6.19 -52.49 -0.32 2.79 16 34 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 35 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 38 H 0.05 0.83 6.54 -51.93 -0.34 0.50 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -30.89 322.16 -6.56 -37.45 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -4.05 Total: 13.33 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -1.52 Total: -12.50 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.35 Total: -34.49 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -1.17 Total: -22.62 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.89 -6.56 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163801821.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.498 kcal (2) G-P(sol) polarization free energy of solvation -30.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds