Wall clock time and date at job start Tue Mar 31 2020 00:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99777 * 2 1 4 4 H 1.48500 * 109.46755 * 270.00075 * 3 2 1 5 5 H 1.48494 * 109.47308 * 29.99773 * 3 2 1 6 6 H 1.48496 * 109.47178 * 150.00125 * 3 2 1 7 7 C 1.37873 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00177 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47240 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46997 * 180.02562 * 10 9 7 12 12 N 1.46506 * 109.46684 * 180.02562 * 11 10 9 13 13 C 1.39687 * 119.99747 * 179.97438 * 12 11 10 14 14 C 1.36818 * 120.40375 * 359.72289 * 13 12 11 15 15 C 1.40305 * 119.52326 * 179.79498 * 14 13 12 16 16 F 1.35104 * 119.89228 * 180.25268 * 15 14 13 17 17 C 1.35405 * 120.21614 * 0.48772 * 15 14 13 18 18 N 1.36167 * 120.68057 * 359.73952 * 17 15 14 19 19 N 1.40230 * 133.00442 * 180.02562 * 18 17 15 20 20 C 1.31834 * 107.06607 * 180.02562 * 19 18 17 21 21 N 1.39394 * 125.28627 * 179.97438 * 20 19 18 22 22 N 1.32893 * 109.41918 * 0.02562 * 20 19 18 23 23 C 1.32994 * 109.61781 * 359.97438 * 22 20 19 24 24 H 0.96992 * 120.00032 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47247 * 59.99954 * 9 7 2 26 26 H 1.08996 * 109.47258 * 300.00114 * 9 7 2 27 27 H 1.09000 * 109.46866 * 59.99931 * 10 9 7 28 28 H 1.09001 * 109.46611 * 300.00048 * 10 9 7 29 29 H 1.09000 * 109.47486 * 60.00167 * 11 10 9 30 30 H 1.09001 * 109.47362 * 299.99445 * 11 10 9 31 31 H 0.96995 * 120.00050 * 359.72237 * 12 11 10 32 32 H 1.08003 * 120.23524 * 0.02562 * 14 13 12 33 33 H 1.07998 * 119.66215 * 179.76922 * 17 15 14 34 34 H 0.97000 * 120.00832 * 359.97438 * 21 20 19 35 35 H 0.97002 * 119.99465 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9870 -0.0001 12 7 2.4325 -6.1006 0.0005 13 6 1.9669 -7.4175 0.0006 14 6 0.6236 -7.6770 0.0059 15 6 0.1763 -9.0069 0.0015 16 9 -1.1486 -9.2716 0.0015 17 6 1.0680 -10.0258 0.0022 18 7 2.4068 -9.7774 0.0017 19 7 3.5343 -10.6112 0.0017 20 6 4.5948 -9.8279 0.0016 21 7 5.9185 -10.2648 0.0021 22 7 4.2055 -8.5573 0.0022 23 6 2.8769 -8.4972 0.0020 24 1 -0.4850 0.8400 0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6242 -2.5567 0.8902 27 1 2.8721 -3.6043 0.8905 28 1 2.8721 -3.6042 -0.8895 29 1 0.8541 -5.0446 -0.8903 30 1 0.8535 -5.0451 0.8897 31 1 3.3861 -5.9233 -0.0029 32 1 -0.0874 -6.8640 0.0095 33 1 0.7138 -11.0460 0.0026 34 1 6.1159 -11.2144 0.0029 35 1 6.6423 -9.6189 0.0017 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433469.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:29 Heat of formation + Delta-G solvation = 72.036830 kcal Electronic energy + Delta-G solvation = -20410.753977 eV Core-core repulsion = 16974.240011 eV Total energy + Delta-G solvation = -3436.513966 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.16365 -42.68866 -38.50653 -36.60312 -34.25682 -33.92171 -32.53004 -31.02375 -29.93067 -28.76815 -26.55853 -24.26969 -23.17726 -22.44991 -21.48934 -20.52494 -18.83342 -18.12259 -17.37988 -16.63716 -16.41029 -16.26827 -15.82932 -15.60173 -15.50764 -15.03324 -14.93110 -14.66979 -14.43738 -13.17985 -12.94126 -12.66645 -12.45278 -12.32437 -11.89644 -11.64477 -11.40067 -10.92247 -10.80389 -10.61941 -10.41931 -10.21229 -9.94120 -9.56110 -9.35740 -9.20202 -8.64092 -8.42468 -7.34496 -6.07552 -4.10516 0.68478 0.78553 1.76335 2.69049 2.98581 3.24620 3.28113 3.30073 3.34930 3.38218 3.82757 3.89722 4.40386 4.56062 4.75334 4.94091 5.28797 5.37471 5.47356 5.55999 5.58210 5.80821 5.92098 5.96882 6.19223 6.45717 6.46584 6.53111 6.87731 7.00461 7.06703 7.14217 7.55167 7.56312 7.66612 7.90575 8.07920 8.31873 8.95836 9.54310 11.03712 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022034 B = 0.003282 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.479872 B = 8528.129083 C = 9772.859919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.113 3.887 12 N -0.706 5.706 13 C 0.272 3.728 14 C -0.230 4.230 15 C 0.135 3.865 16 F -0.117 7.117 17 C -0.007 4.007 18 N -0.237 5.237 19 N -0.375 5.375 20 C 0.495 3.505 21 N -0.820 5.820 22 N -0.565 5.565 23 C 0.262 3.738 24 H 0.262 0.738 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.413 0.587 32 H 0.161 0.839 33 H 0.174 0.826 34 H 0.414 0.586 35 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 -20.631 0.003 21.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.160 4.160 11 C -0.009 4.009 12 N -0.330 5.330 13 C 0.158 3.842 14 C -0.265 4.265 15 C 0.111 3.889 16 F -0.096 7.096 17 C -0.138 4.138 18 N -0.011 5.011 19 N -0.219 5.219 20 C 0.125 3.875 21 N -0.376 5.376 22 N -0.303 5.303 23 C 0.005 3.995 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.038 0.962 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.250 0.750 32 H 0.178 0.822 33 H 0.191 0.809 34 H 0.245 0.755 35 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 4.727 -20.807 0.010 21.337 hybrid contribution 0.710 0.883 -0.017 1.133 sum 5.437 -19.924 -0.007 20.652 Atomic orbital electron populations 1.69952 1.06051 1.26780 1.50534 1.25015 0.94865 0.99328 0.95168 0.86577 0.79841 0.83351 0.78147 1.20626 1.21182 1.19853 1.21193 0.93065 0.90895 1.51038 0.92604 1.19028 0.93761 0.90817 0.97633 1.21887 0.99905 0.92788 1.01373 1.21904 0.92102 0.85308 1.01616 1.45128 1.10575 1.00896 1.76367 1.16223 0.89487 0.83828 0.94670 1.20426 0.94145 0.96421 1.15514 1.16059 0.77899 0.91717 1.03269 1.91561 1.29526 1.94547 1.93932 1.20510 0.78915 1.01122 1.13224 1.46463 1.05296 1.05286 1.44062 1.78708 0.89318 1.11066 1.42812 1.20301 0.87804 0.86684 0.92712 1.40931 0.99915 1.10714 1.86056 1.70486 1.07003 1.19217 1.33570 1.20934 0.89723 0.86374 1.02504 0.92882 0.96231 0.96206 0.92431 0.92449 0.91453 0.91440 0.75047 0.82183 0.80878 0.75508 0.75204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.03 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.11 1.67 4.92 -4.04 -0.02 1.65 16 12 N -0.71 -9.58 5.74 -58.54 -0.34 -9.92 16 13 C 0.27 3.63 6.68 -83.67 -0.56 3.07 16 14 C -0.23 -2.76 9.33 -39.32 -0.37 -3.12 16 15 C 0.14 1.50 7.25 -39.82 -0.29 1.21 16 16 F -0.12 -1.26 17.26 2.25 0.04 -1.22 16 17 C -0.01 -0.08 11.16 -16.64 -0.19 -0.26 16 18 N -0.24 -3.24 3.90 -12.12 -0.05 -3.29 16 19 N -0.38 -5.27 12.81 29.92 0.38 -4.89 16 20 C 0.49 6.58 9.38 -321.68 -3.02 3.56 16 21 N -0.82 -7.06 9.12 29.93 0.27 -6.79 16 22 N -0.57 -8.30 11.28 -13.07 -0.15 -8.44 16 23 C 0.26 3.78 7.75 -156.22 -1.21 2.57 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 30 H 0.07 0.97 7.95 -51.93 -0.41 0.56 16 31 H 0.41 5.57 8.50 -40.82 -0.35 5.23 16 32 H 0.16 1.77 6.74 -52.48 -0.35 1.42 16 33 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 34 H 0.41 2.57 8.96 -40.82 -0.37 2.21 16 35 H 0.42 2.85 8.96 -40.82 -0.37 2.48 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -31.19 311.28 -9.68 -40.88 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -3.91 Total: 4.43 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -6.34 Total: -6.23 kcal Atomic # 7 Polarization: -59.49 SS G_CDS: 0.86 Total: -58.63 kcal Atomic # 9 Polarization: -1.26 SS G_CDS: 0.04 Total: -1.22 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.19 -9.68 -40.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433469.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.912 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds