Wall clock time and date at job start Tue Mar 31 2020 01:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35134 * 126.44664 * 2 1 4 4 O 1.33926 * 108.76529 * 179.75508 * 3 2 1 5 5 C 1.34912 * 109.39002 * 0.40517 * 4 3 2 6 6 C 1.46659 * 125.99236 * 179.86462 * 5 4 3 7 7 O 1.21694 * 120.00044 * 179.69163 * 6 5 4 8 8 N 1.34779 * 119.99578 * 359.68728 * 6 5 4 9 9 C 1.47021 * 125.65165 * 359.97438 * 8 6 5 10 10 C 1.54320 * 107.27383 * 178.97713 * 9 8 6 11 11 C 1.55163 * 102.94147 * 337.80980 * 10 9 8 12 12 O 1.42905 * 111.00244 * 277.42891 * 11 10 9 13 13 C 1.50698 * 111.00660 * 153.61367 * 11 10 9 14 14 H 1.08002 * 119.99847 * 3.18328 * 13 11 10 15 15 C 1.37871 * 120.00404 * 183.17791 * 13 11 10 16 16 N 1.31519 * 119.99458 * 0.02562 * 15 13 11 17 17 Si 1.86798 * 120.00501 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46727 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46971 * 120.00003 * 17 15 13 20 20 H 1.48494 * 109.47420 * 240.00150 * 17 15 13 21 21 C 1.47524 * 125.63317 * 180.02562 * 8 6 5 22 22 C 1.36546 * 108.02196 * 359.59957 * 5 4 3 23 23 C 1.50702 * 126.64404 * 180.22107 * 22 5 4 24 24 H 1.08991 * 109.47343 * 270.00272 * 1 2 3 25 25 H 1.09003 * 109.46656 * 30.00115 * 1 2 3 26 26 H 1.08993 * 109.47195 * 149.99511 * 1 2 3 27 27 H 1.07994 * 125.61333 * 359.96640 * 3 2 1 28 28 H 1.09008 * 109.87829 * 59.55894 * 9 8 6 29 29 H 1.09003 * 110.01182 * 298.46925 * 9 8 6 30 30 H 1.09002 * 110.72325 * 219.44906 * 10 9 8 31 31 H 1.08996 * 110.71901 * 96.16983 * 10 9 8 32 32 H 0.96696 * 114.00036 * 176.81949 * 12 11 10 33 33 H 0.97010 * 119.99713 * 180.02562 * 16 15 13 34 34 H 1.09004 * 110.36953 * 85.27503 * 21 8 6 35 35 H 1.09001 * 110.41107 * 322.91781 * 21 8 6 36 36 H 1.08996 * 109.47180 * 90.00395 * 23 22 5 37 37 H 1.09004 * 109.46679 * 209.99797 * 23 22 5 38 38 H 1.08998 * 109.46961 * 329.99399 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5858 0.6803 0.0054 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4943 0.0005 7 8 4.7470 -2.7079 0.0009 8 7 6.0521 -0.9094 0.0004 9 6 6.3056 0.5388 -0.0006 10 6 7.8359 0.7361 0.0261 11 6 8.3492 -0.6060 0.6117 12 8 8.2704 -0.6056 2.0386 13 6 9.7549 -0.8938 0.1513 14 1 10.2810 -0.1750 -0.4595 15 6 10.3696 -2.0747 0.5097 16 7 9.7288 -2.9502 1.2531 17 14 12.1118 -2.4319 -0.0616 18 1 12.6069 -1.2960 -0.8801 19 1 12.9933 -2.6112 1.1201 20 1 12.1206 -3.6720 -0.8784 21 6 7.3468 -1.6166 0.0004 22 6 2.3408 -1.1292 -0.0001 23 6 1.9024 -2.5711 -0.0005 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8899 -0.5139 27 1 1.9772 2.1145 -0.0005 28 1 5.8576 0.9942 0.8827 29 1 5.8893 0.9897 -0.9015 30 1 8.1062 1.5687 0.6756 31 1 8.2225 0.8902 -0.9813 32 1 8.5346 -1.4412 2.4473 33 1 10.1614 -3.7810 1.5057 34 1 7.6393 -1.8723 -1.0181 35 1 7.2897 -2.5141 0.6163 36 1 1.7967 -2.9191 1.0270 37 1 0.9451 -2.6596 -0.5143 38 1 2.6481 -3.1774 -0.5147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326347319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:08 Heat of formation + Delta-G solvation = -75.945124 kcal Electronic energy + Delta-G solvation = -22295.228182 eV Core-core repulsion = 18911.172040 eV Total energy + Delta-G solvation = -3384.056142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.60393 -39.18946 -37.22480 -34.90875 -34.13922 -32.20401 -31.40213 -30.24013 -28.11202 -27.39436 -27.18485 -25.13522 -23.14772 -21.48465 -20.10227 -19.60723 -18.80785 -17.23292 -16.84811 -16.32387 -15.96672 -15.32637 -14.79942 -14.76290 -14.38788 -14.01405 -13.38317 -13.20022 -13.09771 -12.87461 -12.72671 -12.68812 -12.47773 -12.07759 -12.02752 -11.62323 -11.50097 -11.45542 -11.06997 -10.79672 -10.58914 -10.47368 -10.19952 -9.63614 -9.39000 -9.30662 -8.71170 -8.49336 -8.36484 -7.79404 -6.29977 -4.39588 1.29111 2.36243 2.92142 3.19133 3.28138 3.31468 3.58925 3.64449 4.25548 4.71311 4.75624 4.89825 4.97627 5.22150 5.36339 5.44099 5.47464 5.67315 5.71421 5.76783 5.83180 5.84388 5.95002 6.08446 6.10421 6.21343 6.29413 6.50078 6.56417 6.71147 6.83019 6.88098 7.08458 7.23322 7.32802 7.72732 7.98859 8.11321 8.57955 8.65077 9.29643 9.40177 10.77402 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.036238 B = 0.004425 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.487260 B = 6325.836205 C = 6794.326653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.195 4.195 3 C -0.022 4.022 4 O -0.155 6.155 5 C -0.061 4.061 6 C 0.602 3.398 7 O -0.530 6.530 8 N -0.598 5.598 9 C 0.107 3.893 10 C -0.118 4.118 11 C 0.248 3.752 12 O -0.583 6.583 13 C -0.537 4.537 14 H 0.068 0.932 15 C 0.071 3.929 16 N -0.894 5.894 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.094 3.906 22 C -0.100 4.100 23 C -0.090 4.090 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.205 0.795 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.384 0.616 33 H 0.270 0.730 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 6.639 -2.759 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.197 4.197 3 C -0.092 4.092 4 O -0.050 6.050 5 C -0.113 4.113 6 C 0.390 3.610 7 O -0.410 6.410 8 N -0.328 5.328 9 C -0.016 4.016 10 C -0.155 4.155 11 C 0.208 3.792 12 O -0.392 6.392 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.132 4.132 16 N -0.533 5.533 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.027 4.027 22 C -0.103 4.103 23 C -0.147 4.147 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.221 0.779 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.235 0.765 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -14.326 6.577 -2.779 16.006 hybrid contribution 0.891 -0.700 -0.179 1.147 sum -13.434 5.877 -2.958 14.959 Atomic orbital electron populations 1.20132 0.88973 1.02479 1.02038 1.20305 0.97334 0.92213 1.09804 1.24086 0.80555 0.99727 1.04789 1.84185 1.28574 1.21832 1.70379 1.22131 0.95961 0.80275 1.12958 1.16203 0.80421 0.86019 0.78366 1.90812 1.85326 1.12052 1.52834 1.48694 1.06143 1.08621 1.69385 1.22036 0.98057 0.80913 1.00558 1.22643 0.91770 0.99846 1.01290 1.19628 0.91905 0.88263 0.79429 1.86093 1.90583 1.41854 1.20658 1.21518 0.98620 1.03887 1.33548 0.91365 1.25088 0.98612 0.95487 0.94056 1.69667 1.37666 1.09583 1.36359 0.86334 0.83545 0.78340 0.78604 1.19561 1.20731 1.20744 1.23391 0.79407 0.98383 1.01473 1.20426 0.90772 0.97229 1.01854 1.20367 1.01484 0.90173 1.02668 0.91503 0.91720 0.91479 0.77875 0.91848 0.92386 0.90578 0.90350 0.76546 0.91959 0.91756 0.89441 0.91088 0.91945 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.23 36.01 0.37 -0.32 16 2 C -0.20 -2.44 6.14 -104.92 -0.64 -3.08 16 3 C -0.02 -0.26 12.00 29.63 0.36 0.10 16 4 O -0.15 -2.42 8.28 5.01 0.04 -2.38 16 5 C -0.06 -1.09 6.95 -36.79 -0.26 -1.35 16 6 C 0.60 12.84 7.82 -12.86 -0.10 12.74 16 7 O -0.53 -12.44 14.99 5.19 0.08 -12.36 16 8 N -0.60 -12.92 3.33 -171.98 -0.57 -13.49 16 9 C 0.11 2.02 5.55 -3.07 -0.02 2.00 16 10 C -0.12 -2.37 6.13 -24.90 -0.15 -2.53 16 11 C 0.25 6.04 0.88 -89.62 -0.08 5.96 16 12 O -0.58 -15.00 13.17 -35.23 -0.46 -15.47 16 13 C -0.54 -13.91 8.26 -34.44 -0.28 -14.20 16 14 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 15 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 16 N -0.89 -23.74 10.69 55.43 0.59 -23.15 16 17 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 C 0.09 2.28 5.51 -2.47 -0.01 2.27 16 22 C -0.10 -1.56 6.20 -104.43 -0.65 -2.20 16 23 C -0.09 -1.28 9.66 36.01 0.35 -0.93 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.56 7.40 -51.93 -0.38 0.17 16 27 H 0.20 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.06 1.17 7.67 -51.92 -0.40 0.77 16 29 H 0.06 0.97 7.80 -51.93 -0.40 0.56 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.08 1.48 8.03 -51.93 -0.42 1.06 16 32 H 0.38 10.15 7.25 45.56 0.33 10.48 16 33 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 34 H 0.06 1.58 8.03 -51.93 -0.42 1.16 16 35 H 0.09 2.36 7.48 -51.93 -0.39 1.97 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.70 7.40 -51.93 -0.38 0.31 16 38 H 0.09 1.42 6.45 -51.93 -0.33 1.08 16 LS Contribution 316.14 15.07 4.76 4.76 Total: -1.00 -29.60 316.14 -6.25 -35.85 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.46 Total: 10.82 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.22 Total: 0.20 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.02 Total: -36.64 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.34 Total: -30.20 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.60 -6.25 -35.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326347319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.091 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds