Wall clock time and date at job start Tue Mar 31 2020 01:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35122 * 126.44339 * 2 1 4 4 O 1.33931 * 108.76892 * 180.02562 * 3 2 1 5 5 C 1.34907 * 109.38387 * 0.02562 * 4 3 2 6 6 C 1.46660 * 125.98925 * 180.02562 * 5 4 3 7 7 O 1.21694 * 119.99969 * 180.02562 * 6 5 4 8 8 N 1.34770 * 119.99866 * 0.02562 * 6 5 4 9 9 C 1.47422 * 125.65124 * 359.97438 * 8 6 5 10 10 C 1.54909 * 104.83564 * 155.91495 * 9 8 6 11 11 C 1.55152 * 101.58032 * 37.00513 * 10 9 8 12 12 O 1.42903 * 110.72100 * 82.86680 * 11 10 9 13 13 C 1.50703 * 110.71825 * 205.95483 * 11 10 9 14 14 H 1.07993 * 120.00249 * 357.56786 * 13 11 10 15 15 C 1.37877 * 119.99923 * 177.55974 * 13 11 10 16 16 N 1.31521 * 120.00053 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00236 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46913 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47079 * 119.99981 * 17 15 13 20 20 H 1.48501 * 109.46992 * 240.00088 * 17 15 13 21 21 C 1.47027 * 125.65010 * 180.02562 * 8 6 5 22 22 C 1.36550 * 108.02761 * 0.26420 * 5 4 3 23 23 C 1.50690 * 126.65021 * 179.69958 * 22 5 4 24 24 H 1.09000 * 109.47374 * 89.97040 * 1 2 3 25 25 H 1.09007 * 109.47491 * 209.97561 * 1 2 3 26 26 H 1.09008 * 109.47000 * 329.96636 * 1 2 3 27 27 H 1.08005 * 125.61709 * 0.03843 * 3 2 1 28 28 H 1.09002 * 110.36847 * 37.06750 * 9 8 6 29 29 H 1.09005 * 110.45737 * 274.79985 * 9 8 6 30 30 H 1.09005 * 111.00113 * 278.93173 * 10 9 8 31 31 H 1.08998 * 111.03822 * 155.09465 * 10 9 8 32 32 H 0.96700 * 114.00311 * 179.97438 * 12 11 10 33 33 H 0.97000 * 119.99959 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.87825 * 61.59771 * 21 8 6 35 35 H 1.09001 * 109.88209 * 300.43826 * 21 8 6 36 36 H 1.09003 * 109.47282 * 89.99761 * 23 22 5 37 37 H 1.09006 * 109.47139 * 209.99709 * 23 22 5 38 38 H 1.08998 * 109.47222 * 329.99794 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 -0.0006 5 6 3.6260 -0.6681 -0.0015 6 6 4.8378 -1.4942 -0.0018 7 8 4.7470 -2.7077 -0.0032 8 7 6.0520 -0.9093 -0.0006 9 6 6.3062 0.5429 0.0005 10 6 7.7208 0.6974 0.6127 11 6 8.4506 -0.5401 0.0268 12 8 8.9254 -0.2690 -1.2934 13 6 9.5859 -0.9633 0.9231 14 1 9.8136 -0.3934 1.8117 15 6 10.3336 -2.0782 0.6086 16 7 10.0565 -2.7720 -0.4738 17 14 11.7404 -2.6032 1.7198 18 1 11.8455 -1.6620 2.8635 19 1 11.4840 -3.9745 2.2285 20 1 13.0104 -2.5901 0.9503 21 6 7.3425 -1.6137 -0.0013 22 6 2.3407 -1.1292 -0.0075 23 6 1.9024 -2.5709 -0.0170 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5144 27 1 1.9770 2.1145 0.0006 28 1 5.5681 1.0568 0.6163 29 1 6.2884 0.9336 -1.0169 30 1 7.6829 0.6497 1.7010 31 1 8.1920 1.6224 0.2804 32 1 9.3897 -1.0109 -1.7046 33 1 10.5828 -3.5561 -0.6953 34 1 7.4345 -2.2179 -0.9039 35 1 7.4188 -2.2484 0.8816 36 1 1.7940 -2.9245 1.0084 37 1 0.9464 -2.6567 -0.5338 38 1 2.6495 -3.1745 -0.5324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326347320.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:22:10 Heat of formation + Delta-G solvation = -75.794162 kcal Electronic energy + Delta-G solvation = -22260.574657 eV Core-core repulsion = 18876.525061 eV Total energy + Delta-G solvation = -3384.049596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.63058 -39.21318 -37.26819 -34.94738 -34.17419 -32.21039 -31.42144 -30.17865 -28.14967 -27.41033 -27.18553 -25.13989 -23.15386 -21.55833 -20.12689 -19.57798 -18.86449 -17.21232 -16.87500 -16.34881 -15.99665 -15.47374 -14.82451 -14.69586 -14.29492 -14.00118 -13.38678 -13.19590 -13.01670 -12.92668 -12.77193 -12.72198 -12.48239 -12.12318 -12.08993 -11.64822 -11.54899 -11.43059 -11.08043 -10.78966 -10.62964 -10.49355 -10.18392 -9.64763 -9.33614 -9.31867 -8.69852 -8.50421 -8.34384 -7.89372 -6.31030 -4.39934 1.26960 2.34253 2.89421 3.19309 3.28259 3.31745 3.56520 3.62140 4.25658 4.68747 4.73278 4.88890 4.97147 5.19910 5.36056 5.43213 5.47148 5.64651 5.73928 5.78397 5.81814 5.82601 5.91331 6.06843 6.09171 6.19584 6.30350 6.49176 6.54746 6.73782 6.83123 6.88449 7.05276 7.23991 7.35217 7.71271 7.96962 8.09778 8.55711 8.64891 9.28654 9.38686 10.76726 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.033249 B = 0.004441 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.940794 B = 6303.134315 C = 6739.146115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.195 4.195 3 C -0.022 4.022 4 O -0.155 6.155 5 C -0.061 4.061 6 C 0.601 3.399 7 O -0.530 6.530 8 N -0.599 5.599 9 C 0.101 3.899 10 C -0.118 4.118 11 C 0.248 3.752 12 O -0.585 6.585 13 C -0.538 4.538 14 H 0.068 0.932 15 C 0.070 3.930 16 N -0.895 5.895 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.103 3.897 22 C -0.099 4.099 23 C -0.091 4.091 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.205 0.795 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.385 0.615 33 H 0.270 0.730 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.008 6.494 0.669 16.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.196 4.196 3 C -0.092 4.092 4 O -0.050 6.050 5 C -0.114 4.114 6 C 0.388 3.612 7 O -0.410 6.410 8 N -0.330 5.330 9 C -0.021 4.021 10 C -0.155 4.155 11 C 0.207 3.793 12 O -0.395 6.395 13 C -0.576 4.576 14 H 0.086 0.914 15 C -0.133 4.133 16 N -0.534 5.534 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.018 4.018 22 C -0.102 4.102 23 C -0.147 4.147 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.221 0.779 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.236 0.764 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.027 6.409 0.678 16.351 hybrid contribution 0.807 -0.811 0.407 1.214 sum -14.220 5.598 1.085 15.321 Atomic orbital electron populations 1.20135 0.88964 1.02543 1.02010 1.20306 0.97336 0.92201 1.09774 1.24110 0.80640 0.99746 1.04693 1.84220 1.28482 1.21815 1.70495 1.22114 0.95919 0.80285 1.13040 1.16235 0.80396 0.86038 0.78484 1.90813 1.85348 1.12084 1.52779 1.48713 1.06080 1.08817 1.69406 1.22431 0.98050 0.80735 1.00908 1.22770 0.92849 1.00062 0.99868 1.19497 0.89706 0.88044 0.82012 1.86091 1.77437 1.44790 1.31132 1.21559 1.14801 1.11544 1.09684 0.91364 1.25089 0.97409 0.95499 0.95315 1.69652 1.40382 1.18463 1.24923 0.86332 0.81469 0.78529 0.80500 1.19564 1.20729 1.20709 1.23103 0.79631 0.96866 1.02186 1.20430 0.90757 0.97228 1.01779 1.20365 1.01576 0.90166 1.02617 0.91536 0.91457 0.91671 0.77867 0.91141 0.91554 0.90469 0.90357 0.76401 0.91950 0.91324 0.91201 0.91133 0.91899 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.16 36.01 0.37 -0.32 16 2 C -0.19 -2.39 6.14 -104.93 -0.64 -3.03 16 3 C -0.02 -0.26 12.00 29.62 0.36 0.10 16 4 O -0.15 -2.37 7.86 5.02 0.04 -2.33 16 5 C -0.06 -1.09 6.93 -36.79 -0.25 -1.34 16 6 C 0.60 12.68 7.82 -12.86 -0.10 12.58 16 7 O -0.53 -12.34 15.07 5.19 0.08 -12.26 16 8 N -0.60 -12.91 3.33 -172.07 -0.57 -13.48 16 9 C 0.10 1.91 6.16 -2.53 -0.02 1.89 16 10 C -0.12 -2.38 6.22 -24.59 -0.15 -2.54 16 11 C 0.25 6.02 0.86 -89.94 -0.08 5.94 16 12 O -0.59 -14.77 13.09 -35.23 -0.46 -15.24 16 13 C -0.54 -14.00 8.12 -34.44 -0.28 -14.28 16 14 H 0.07 1.75 7.77 -52.49 -0.41 1.34 16 15 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 16 N -0.90 -23.72 10.97 55.43 0.61 -23.11 16 17 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.10 2.52 5.39 -3.07 -0.02 2.50 16 22 C -0.10 -1.52 6.20 -104.43 -0.65 -2.17 16 23 C -0.09 -1.26 9.58 36.00 0.34 -0.92 16 24 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 26 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 28 H 0.07 1.17 6.22 -51.93 -0.32 0.85 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.38 9.96 7.17 45.56 0.33 10.29 16 33 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.07 1.81 8.01 -51.93 -0.42 1.40 16 35 H 0.07 1.83 7.82 -51.93 -0.41 1.43 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.70 8.06 -51.93 -0.42 0.28 16 38 H 0.09 1.42 6.45 -51.93 -0.34 1.08 16 LS Contribution 316.71 15.07 4.77 4.77 Total: -1.00 -29.49 316.71 -6.26 -35.75 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.49 Total: 10.43 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.22 Total: 0.15 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.04 Total: -36.59 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.34 Total: -29.83 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.49 -6.26 -35.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326347320.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.044 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds