Wall clock time and date at job start Tue Mar 31 2020 00:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99694 * 2 1 4 4 H 1.48502 * 109.47000 * 269.99824 * 3 2 1 5 5 H 1.48502 * 109.47306 * 29.99673 * 3 2 1 6 6 H 1.48501 * 109.47411 * 149.99941 * 3 2 1 7 7 C 1.37873 * 120.00615 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99595 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00534 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47332 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.47020 * 179.97438 * 10 9 7 12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46656 * 179.97438 * 12 11 10 14 14 C 1.38264 * 119.94710 * 269.72785 * 13 12 11 15 15 C 1.38141 * 120.05663 * 179.72910 * 14 13 12 16 16 C 1.38744 * 119.94145 * 0.56624 * 15 14 13 17 17 O 1.35899 * 120.05593 * 179.68397 * 16 15 14 18 18 C 1.42903 * 116.99883 * 0.02562 * 17 16 15 19 19 C 1.50701 * 109.47206 * 179.97438 * 18 17 16 20 20 O 1.20831 * 119.99621 * 0.02562 * 19 18 17 21 21 O 1.34224 * 120.00064 * 179.97438 * 19 18 17 22 22 C 1.38733 * 119.88894 * 359.70842 * 16 15 14 23 23 C 1.38148 * 119.94226 * 359.97438 * 22 16 15 24 24 H 0.97001 * 120.00228 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47766 * 59.99216 * 9 7 2 26 26 H 1.09008 * 109.46651 * 299.99865 * 9 7 2 27 27 H 1.09002 * 109.47142 * 59.99917 * 10 9 7 28 28 H 1.09000 * 109.46991 * 299.99661 * 10 9 7 29 29 H 1.00896 * 111.00309 * 56.04370 * 11 10 9 30 30 H 1.08990 * 109.47358 * 299.99539 * 12 11 10 31 31 H 1.09004 * 109.47457 * 60.00221 * 12 11 10 32 32 H 1.07997 * 119.97123 * 359.97438 * 14 13 12 33 33 H 1.07995 * 120.03365 * 180.24888 * 15 14 13 34 34 H 1.09002 * 109.47004 * 299.99844 * 18 17 16 35 35 H 1.09005 * 109.46989 * 60.00106 * 18 17 16 36 36 H 0.96700 * 116.99891 * 179.97438 * 21 19 18 37 37 H 1.07996 * 120.02849 * 179.97438 * 22 16 15 38 38 H 1.08000 * 119.97048 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4404 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0023 11 7 5.4907 -2.6363 0.0022 12 6 6.0172 -4.0077 0.0040 13 6 7.5237 -3.9674 0.0032 14 6 8.2133 -3.9563 -1.1951 15 6 9.5940 -3.9137 -1.1985 16 6 10.2892 -3.8939 0.0021 17 8 11.6477 -3.8585 0.0015 18 6 12.2957 -3.8428 -1.2721 19 6 13.7893 -3.8031 -1.0753 20 8 14.2514 -3.7900 0.0411 21 8 14.6062 -3.7832 -2.1402 22 6 9.5951 -3.9108 1.2032 23 6 8.2141 -3.9468 1.2011 24 1 -0.4850 0.8400 -0.0004 25 1 3.8747 -0.6798 0.8910 26 1 3.8752 -0.6802 -0.8889 27 1 3.6587 -3.1508 -0.8875 28 1 3.6580 -3.1496 0.8925 29 1 5.8523 -2.1095 0.7831 30 1 5.6678 -4.5299 0.8946 31 1 5.6677 -4.5322 -0.8854 32 1 7.6719 -3.9770 -2.1294 33 1 10.1321 -3.9010 -2.1347 34 1 12.0259 -4.7407 -1.8281 35 1 11.9795 -2.9613 -1.8298 36 1 15.5566 -3.7575 -1.9639 37 1 10.1339 -3.8959 2.1390 38 1 7.6733 -3.9604 2.1358 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608182012.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:57 Heat of formation + Delta-G solvation = -104.825763 kcal Electronic energy + Delta-G solvation = -20065.967498 eV Core-core repulsion = 16680.658997 eV Total energy + Delta-G solvation = -3385.308501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03221 -40.12066 -38.13282 -36.63498 -35.79700 -33.02511 -31.54230 -31.15932 -29.82342 -28.72157 -25.33463 -23.53006 -23.15224 -22.09250 -21.03593 -20.34610 -19.05918 -18.05016 -17.40903 -17.15014 -16.76473 -15.97035 -15.72025 -15.41622 -15.05640 -14.42284 -14.24633 -14.02181 -13.79887 -13.64885 -13.16541 -12.92278 -12.84525 -12.55132 -12.16960 -12.11023 -11.49186 -11.37640 -11.31905 -11.15275 -10.99974 -10.88159 -10.17515 -9.80484 -9.78039 -9.23393 -9.15441 -8.53603 -8.35699 -7.94104 -6.04362 -4.02853 1.17334 1.24805 1.59323 1.80302 3.22583 3.33348 3.40216 3.45251 3.57182 4.33154 4.42056 4.46504 4.54501 4.66107 4.69459 4.72330 4.98781 5.16829 5.24591 5.30258 5.40100 5.59496 5.78155 5.88367 5.90748 6.07086 6.14223 6.20459 6.24885 6.52526 6.57544 6.76492 7.03406 7.11417 7.29731 7.38060 7.57592 7.73520 7.88999 8.52867 8.99545 9.58013 11.08863 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002470 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.863626 B =11334.504490 C =11733.602376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.010 4.010 10 C 0.073 3.927 11 N -0.690 5.690 12 C 0.098 3.902 13 C -0.105 4.105 14 C -0.057 4.057 15 C -0.209 4.209 16 C 0.118 3.882 17 O -0.298 6.298 18 C 0.069 3.931 19 C 0.482 3.518 20 O -0.492 6.492 21 O -0.512 6.512 22 C -0.144 4.144 23 C -0.074 4.074 24 H 0.263 0.737 25 H 0.013 0.987 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.023 0.977 29 H 0.336 0.664 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.419 0.581 37 H 0.131 0.869 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.314 -10.120 -3.568 29.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.089 0.911 9 C -0.048 4.048 10 C -0.055 4.055 11 N -0.321 5.321 12 C -0.031 4.031 13 C -0.106 4.106 14 C -0.076 4.076 15 C -0.227 4.227 16 C 0.074 3.926 17 O -0.212 6.212 18 C -0.008 4.008 19 C 0.323 3.677 20 O -0.377 6.377 21 O -0.325 6.325 22 C -0.163 4.163 23 C -0.093 4.093 24 H 0.073 0.927 25 H 0.031 0.969 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.154 0.846 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.279 0.721 37 H 0.149 0.851 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 27.026 -9.945 -3.846 29.053 hybrid contribution 0.752 0.693 0.767 1.279 sum 27.778 -9.252 -3.079 29.439 Atomic orbital electron populations 1.69915 1.06316 1.26928 1.51113 1.25015 0.94745 0.99245 0.94484 0.86728 0.80282 0.83388 0.78570 1.20249 1.21513 1.18966 1.21066 0.89373 0.94515 1.51039 0.91102 1.19545 0.96647 0.91820 0.96758 1.21987 0.83822 1.00144 0.99584 1.60677 1.09839 1.11652 1.49906 1.20847 0.89366 0.91735 1.01174 1.19893 0.95964 1.01801 0.92892 1.20864 0.92768 0.95717 0.98254 1.21214 0.95665 1.09366 0.96494 1.18913 0.80583 0.98408 0.94698 1.86050 1.17490 1.89471 1.28200 1.21784 0.86613 1.05695 0.86662 1.22682 0.89766 0.72873 0.82410 1.90794 1.77467 1.43723 1.25746 1.84434 1.23777 1.85792 1.38520 1.20364 0.93658 1.06115 0.96113 1.20928 0.92780 0.97450 0.98145 0.92725 0.96853 0.96087 0.91660 0.95883 0.84640 0.94688 0.90386 0.85265 0.85470 0.87467 0.87384 0.72058 0.85121 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 21.97 27.47 -169.99 -4.67 17.30 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 10 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 11 N -0.69 -11.37 6.49 -115.05 -0.75 -12.11 16 12 C 0.10 1.30 5.81 -4.97 -0.03 1.27 16 13 C -0.10 -1.25 5.39 -104.60 -0.56 -1.82 16 14 C -0.06 -0.63 9.69 -39.61 -0.38 -1.01 16 15 C -0.21 -2.02 9.04 -39.43 -0.36 -2.37 16 16 C 0.12 1.28 6.69 -39.21 -0.26 1.01 16 17 O -0.30 -3.17 9.67 -39.38 -0.38 -3.55 16 18 C 0.07 0.47 5.33 36.01 0.19 0.66 16 19 C 0.48 3.73 8.40 36.01 0.30 4.03 16 20 O -0.49 -5.85 17.26 -25.48 -0.44 -6.29 16 21 O -0.51 -2.35 13.42 -39.24 -0.53 -2.87 16 22 C -0.14 -1.58 9.99 -39.43 -0.39 -1.98 16 23 C -0.07 -0.83 9.69 -39.60 -0.38 -1.21 16 24 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 26 H 0.02 0.51 7.57 -51.92 -0.39 0.12 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.34 5.36 8.72 -39.29 -0.34 5.02 16 30 H 0.04 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 32 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.13 0.85 6.30 -52.49 -0.33 0.52 16 34 H 0.11 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.11 0.52 7.66 -51.93 -0.40 0.13 16 36 H 0.42 0.22 9.10 45.56 0.41 0.64 16 37 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 331.26 15.07 4.99 4.99 Total: -1.00 -35.20 331.26 -7.81 -43.01 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.36 Total: 0.48 kcal Atomic # 6 Polarization: -11.30 SS G_CDS: -2.45 Total: -13.76 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.03 Total: -39.31 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: -1.35 Total: -12.71 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.67 Total: 17.30 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.20 -7.81 -43.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182012.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.815 kcal (2) G-P(sol) polarization free energy of solvation -35.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds