Wall clock time and date at job start Tue Mar 31 2020 02:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46502 * 109.46901 * 2 1 4 4 C 1.36893 * 120.00463 * 66.02857 * 3 2 1 5 5 H 1.07996 * 120.00529 * 237.67695 * 4 3 2 6 6 C 1.39023 * 119.99773 * 57.67466 * 4 3 2 7 7 N 1.31379 * 120.00131 * 38.75762 * 6 4 3 8 8 Si 1.86805 * 120.00144 * 218.76342 * 6 4 3 9 9 H 1.48495 * 109.47300 * 89.99355 * 8 6 4 10 10 H 1.48499 * 109.47222 * 209.99908 * 8 6 4 11 11 H 1.48501 * 109.46736 * 329.99877 * 8 6 4 12 12 C 1.34781 * 119.99611 * 246.03243 * 3 2 1 13 13 O 1.21622 * 119.99720 * 191.78868 * 12 3 2 14 14 C 1.47495 * 120.00337 * 11.77817 * 12 3 2 15 15 C 1.39774 * 120.07385 * 27.82165 * 14 12 3 16 16 C 1.37773 * 119.99918 * 179.97438 * 15 14 12 17 17 C 1.38851 * 120.15157 * 0.02562 * 16 15 14 18 18 O 1.35801 * 119.91927 * 179.97438 * 17 16 15 19 19 C 1.42904 * 117.00536 * 359.97438 * 18 17 16 20 20 C 1.39421 * 120.15770 * 359.95363 * 17 16 15 21 21 O 1.35993 * 120.00163 * 180.02562 * 20 17 16 22 22 C 1.42899 * 117.00256 * 180.02562 * 21 20 17 23 23 C 1.38121 * 119.99844 * 359.78883 * 20 17 16 24 24 H 1.08998 * 109.47331 * 220.72296 * 1 2 3 25 25 H 1.09010 * 109.47327 * 340.72417 * 1 2 3 26 26 H 1.08999 * 109.47231 * 100.72232 * 1 2 3 27 27 H 1.08992 * 109.46912 * 119.99761 * 2 1 3 28 28 H 1.08995 * 109.46999 * 240.00140 * 2 1 3 29 29 H 0.97005 * 119.99894 * 179.97438 * 7 6 4 30 30 H 1.08002 * 120.00241 * 359.97438 * 15 14 12 31 31 H 1.07993 * 119.92518 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47433 * 180.02562 * 19 18 17 33 33 H 1.08996 * 109.46694 * 300.00693 * 19 18 17 34 34 H 1.09005 * 109.46768 * 59.99762 * 19 18 17 35 35 H 1.09006 * 109.46945 * 299.99242 * 22 21 20 36 36 H 1.08994 * 109.47086 * 59.99526 * 22 21 20 37 37 H 1.09000 * 109.47077 * 179.97438 * 22 21 20 38 38 H 1.08001 * 120.08113 * 180.23413 * 23 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 1.7923 2.1872 1.0832 5 1 1.2625 3.1203 0.9610 6 6 2.2450 1.8045 2.3408 7 7 3.4118 1.2142 2.4674 8 14 1.1940 2.1294 3.8506 9 1 0.3014 0.9675 4.0917 10 1 2.0722 2.3324 5.0307 11 1 0.3729 3.3468 3.6293 12 6 2.6899 1.8585 -1.0666 13 8 3.2785 2.9200 -0.9894 14 6 2.7113 1.0934 -2.3275 15 6 1.6499 0.2425 -2.6485 16 6 1.6713 -0.4710 -3.8269 17 6 2.7458 -0.3476 -4.6976 18 8 2.7622 -1.0535 -5.8576 19 6 1.6423 -1.9027 -6.1163 20 6 3.8077 0.4997 -4.3840 21 8 4.8582 0.6185 -5.2393 22 6 5.9116 1.5040 -4.8540 23 6 3.7904 1.2220 -3.2068 24 1 -0.3634 -0.7788 0.6704 25 1 -0.3634 0.9701 0.3393 26 1 -0.3634 -0.1912 -1.0097 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 3.7278 0.9475 3.3449 30 1 0.8131 0.1443 -1.9729 31 1 0.8508 -1.1284 -4.0735 32 1 1.7821 -2.4073 -7.0723 33 1 1.5584 -2.6451 -5.3227 34 1 0.7324 -1.3035 -6.1509 35 1 5.5141 2.5122 -4.7367 36 1 6.3397 1.1699 -3.9090 37 1 6.6846 1.5051 -5.6225 38 1 4.6105 1.8816 -2.9644 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049430.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:56 Heat of formation + Delta-G solvation = -51.758581 kcal Electronic energy + Delta-G solvation = -22224.080162 eV Core-core repulsion = 18841.072827 eV Total energy + Delta-G solvation = -3383.007335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.44111 -38.69614 -38.28268 -36.03255 -35.04193 -32.31361 -30.16618 -30.08088 -29.41536 -27.37323 -27.11931 -25.03872 -22.85164 -21.99501 -21.83587 -19.63909 -18.16133 -17.32208 -16.60280 -16.41893 -15.94362 -15.39549 -15.13755 -15.12247 -14.83690 -14.29817 -14.25775 -13.60477 -13.36759 -13.06434 -12.78966 -12.45877 -12.04092 -11.94714 -11.81638 -11.57887 -11.19613 -11.13905 -11.07683 -11.06254 -10.84472 -10.67714 -10.47584 -10.35385 -10.01917 -8.81955 -8.46722 -8.35270 -7.52938 -7.28535 -6.37743 -4.05708 1.40505 1.62130 3.15833 3.26850 3.30262 3.35223 3.44876 3.67869 4.12854 4.45321 4.81464 4.84337 4.95303 5.08481 5.13911 5.25672 5.29095 5.36857 5.43777 5.56079 5.58904 5.63584 5.69032 5.72063 5.92572 6.08692 6.21862 6.26692 6.50707 6.54575 6.77521 6.81541 6.87652 7.01608 7.17941 7.56738 7.73844 8.41209 8.59009 9.23907 9.32289 10.07969 10.60460 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.024671 B = 0.005119 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.651759 B = 5468.060333 C = 6310.891667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.434 5.434 4 C -0.345 4.345 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.820 5.820 8 Si 0.890 3.110 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.506 3.494 13 O -0.562 6.562 14 C -0.100 4.100 15 C -0.110 4.110 16 C -0.183 4.183 17 C 0.099 3.901 18 O -0.309 6.309 19 C 0.027 3.973 20 C 0.087 3.913 21 O -0.311 6.311 22 C 0.025 3.975 23 C -0.127 4.127 24 H 0.052 0.948 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.267 0.733 30 H 0.153 0.847 31 H 0.134 0.866 32 H 0.096 0.904 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.097 0.903 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 -7.482 -12.197 14.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.035 4.035 3 N -0.154 5.154 4 C -0.471 4.471 5 H 0.100 0.900 6 C -0.141 4.141 7 N -0.451 5.451 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.190 1.190 12 C 0.295 3.705 13 O -0.445 6.445 14 C -0.104 4.104 15 C -0.128 4.128 16 C -0.202 4.202 17 C 0.053 3.947 18 O -0.223 6.223 19 C -0.068 4.068 20 C 0.042 3.958 21 O -0.225 6.225 22 C -0.070 4.070 23 C -0.146 4.146 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.152 0.848 32 H 0.114 0.886 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.550 -7.130 -12.323 14.463 hybrid contribution -0.527 0.001 1.174 1.286 sum -3.077 -7.128 -11.149 13.586 Atomic orbital electron populations 1.22266 0.97116 1.03362 0.99803 1.21897 0.93428 0.86417 1.01766 1.43214 1.47473 1.10325 1.14420 1.18871 1.37749 1.06345 0.84136 0.89971 1.25518 0.93238 0.95702 0.99687 1.70322 1.13714 1.35942 1.25119 0.86544 0.81111 0.79400 0.81385 1.20016 1.21155 1.18997 1.18485 0.80502 0.87165 0.84327 1.90619 1.44701 1.24832 1.84304 1.20311 0.94831 0.98633 0.96643 1.21874 0.99637 0.95127 0.96189 1.20957 0.98424 1.04919 0.95898 1.18342 0.93873 0.94884 0.87553 1.86094 1.43688 1.56277 1.36192 1.23025 0.88527 0.93288 1.01975 1.18053 0.88435 0.98162 0.91139 1.86101 1.28658 1.63277 1.44463 1.23058 0.88916 0.93280 1.01746 1.21163 1.00542 1.00406 0.92535 0.92931 0.90468 0.93493 0.92035 0.90856 0.92264 0.82993 0.84823 0.88586 0.92763 0.92802 0.92497 0.92546 0.88505 0.84000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.85 9.73 37.16 0.36 -2.49 16 2 C 0.09 1.83 5.40 -4.04 -0.02 1.81 16 3 N -0.43 -10.95 2.55 -116.01 -0.30 -11.24 16 4 C -0.34 -9.46 7.49 -15.00 -0.11 -9.57 16 5 H 0.08 2.34 8.05 -52.49 -0.42 1.92 16 6 C 0.07 1.88 4.86 -17.45 -0.08 1.80 16 7 N -0.82 -23.01 13.86 55.50 0.77 -22.24 16 8 Si 0.89 19.88 29.68 -169.99 -5.05 14.84 16 9 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 12 C 0.51 13.03 7.33 -12.49 -0.09 12.94 16 13 O -0.56 -16.65 16.66 5.26 0.09 -16.56 16 14 C -0.10 -2.10 5.38 -104.97 -0.57 -2.67 16 15 C -0.11 -1.91 7.40 -39.18 -0.29 -2.19 16 16 C -0.18 -2.72 9.01 -39.52 -0.36 -3.08 16 17 C 0.10 1.61 6.71 -38.91 -0.26 1.35 16 18 O -0.31 -4.53 10.27 -33.77 -0.35 -4.88 16 19 C 0.03 0.26 9.81 101.05 0.99 1.25 16 20 C 0.09 1.54 6.69 -39.18 -0.26 1.28 16 21 O -0.31 -5.09 10.28 -34.37 -0.35 -5.44 16 22 C 0.03 0.32 9.81 101.05 0.99 1.31 16 23 C -0.13 -2.45 8.57 -39.04 -0.33 -2.79 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 1.45 7.21 -51.92 -0.37 1.08 16 26 H 0.05 0.66 6.17 -51.93 -0.32 0.34 16 27 H 0.06 1.37 7.85 -51.93 -0.41 0.97 16 28 H 0.07 1.38 4.47 -51.93 -0.23 1.15 16 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.15 2.48 3.11 -52.49 -0.16 2.32 16 31 H 0.13 1.51 6.27 -52.49 -0.33 1.18 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 34 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 35 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 36 H 0.06 0.71 7.67 -51.93 -0.40 0.31 16 37 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.14 2.75 6.11 -52.49 -0.32 2.43 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -33.91 315.41 -5.03 -38.94 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -4.56 Total: 2.88 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.04 Total: -1.05 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.47 Total: -33.48 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.61 Total: -26.88 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.05 Total: 14.84 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -33.91 -5.03 -38.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049430.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.822 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds