Wall clock time and date at job start Tue Mar 31 2020 01:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.46859 * 2 1 4 4 O 1.42895 * 109.47541 * 120.00733 * 2 1 3 5 5 C 1.53003 * 109.46853 * 240.00556 * 2 1 3 6 6 H 1.08995 * 109.47397 * 64.99603 * 5 2 1 7 7 C 1.52996 * 109.47243 * 185.00165 * 5 2 1 8 8 O 1.42893 * 109.47476 * 54.99619 * 7 5 2 9 9 N 1.46504 * 109.47098 * 304.99723 * 5 2 1 10 10 C 1.34779 * 120.00102 * 154.99905 * 9 5 2 11 11 O 1.21546 * 120.00026 * 0.02562 * 10 9 5 12 12 C 1.47888 * 120.00141 * 180.02562 * 10 9 5 13 13 C 1.39919 * 120.02333 * 359.72570 * 12 10 9 14 14 C 1.38329 * 120.35999 * 179.71959 * 13 12 10 15 15 C 1.37756 * 120.40512 * 0.55857 * 14 13 12 16 16 C 1.40746 * 120.04203 * 359.71811 * 15 14 13 17 17 C 1.41439 * 120.17588 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99986 * 150.18214 * 17 16 15 19 19 C 1.39932 * 120.00130 * 330.18717 * 17 16 15 20 20 N 1.30831 * 119.99861 * 161.72695 * 19 17 16 21 21 Si 1.86795 * 120.00228 * 341.72553 * 19 17 16 22 22 H 1.48496 * 109.47188 * 95.41673 * 21 19 17 23 23 H 1.48505 * 109.46907 * 215.41271 * 21 19 17 24 24 H 1.48496 * 109.47051 * 335.41114 * 21 19 17 25 25 C 1.38990 * 120.02388 * 180.02562 * 12 10 9 26 26 H 1.09002 * 109.46887 * 299.99610 * 1 2 3 27 27 H 1.08999 * 109.47169 * 59.99436 * 1 2 3 28 28 H 1.09004 * 109.47013 * 179.97438 * 1 2 3 29 29 H 0.96703 * 114.00204 * 59.99580 * 4 2 1 30 30 H 1.08997 * 109.47590 * 175.00002 * 7 5 2 31 31 H 1.09007 * 109.46950 * 294.99402 * 7 5 2 32 32 H 0.96697 * 114.00725 * 180.02562 * 8 7 5 33 33 H 0.96996 * 119.99946 * 335.00343 * 9 5 2 34 34 H 1.08007 * 119.81872 * 359.97438 * 13 12 10 35 35 H 1.07995 * 119.79596 * 180.25719 * 14 13 12 36 36 H 1.08003 * 119.97547 * 179.74314 * 15 14 13 37 37 H 0.97005 * 120.00117 * 180.02562 * 20 19 17 38 38 H 1.07996 * 120.20565 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 1.1666 5 6 2.0400 -0.7212 -1.2494 6 1 1.7515 -0.1582 -2.1370 7 6 3.5647 -0.8310 -1.1882 8 8 3.9479 -1.4666 0.0329 9 7 1.4558 -2.0633 -1.3111 10 6 1.3292 -2.6892 -2.4980 11 8 1.7001 -2.1403 -3.5171 12 6 0.7390 -4.0437 -2.5605 13 6 0.3172 -4.6784 -1.3870 14 6 -0.2411 -5.9430 -1.4380 15 6 -0.3778 -6.5967 -2.6428 16 6 0.0461 -5.9766 -3.8330 17 6 -0.0933 -6.6450 -5.0717 18 1 -0.2399 -6.0768 -5.9784 19 6 -0.0414 -8.0424 -5.1224 20 7 -0.5145 -8.6772 -6.1640 21 14 0.7032 -9.0016 -3.7029 22 1 -0.3755 -9.4375 -2.7802 23 1 1.4151 -10.1934 -4.2303 24 1 1.6620 -8.1364 -2.9699 25 6 0.6087 -4.6898 -3.7842 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.7211 -1.5954 1.2327 30 1 3.9207 -1.4215 -2.0324 31 1 4.0029 0.1661 -1.2318 32 1 4.9034 -1.5696 0.1398 33 1 1.1601 -2.5014 -0.4978 34 1 0.4243 -4.1764 -0.4367 35 1 -0.5674 -6.4226 -0.5271 36 1 -0.8108 -7.5856 -2.6740 37 1 -0.4789 -9.6460 -6.1990 38 1 0.9370 -4.2056 -4.6919 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822527310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:49:07 Heat of formation + Delta-G solvation = -122.484855 kcal Electronic energy + Delta-G solvation = -21843.996275 eV Core-core repulsion = 18457.922018 eV Total energy + Delta-G solvation = -3386.074257 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.00664 -38.25103 -37.13510 -36.12042 -34.05754 -33.67359 -31.41654 -30.37958 -29.99674 -28.60041 -25.26287 -23.84946 -23.12264 -21.01604 -20.67282 -20.02621 -18.27654 -17.41485 -16.86190 -16.26903 -15.95291 -15.46507 -14.92549 -14.82682 -14.70642 -14.30993 -13.77628 -13.65900 -13.48947 -13.05628 -12.79450 -12.76638 -12.43266 -12.06738 -11.92609 -11.72182 -11.60201 -11.09579 -10.99583 -10.81567 -10.57325 -10.29354 -10.03482 -9.81348 -9.72982 -9.45794 -9.18018 -8.89370 -7.90509 -7.79221 -7.03252 -4.58335 1.86982 2.48630 3.03457 3.15481 3.23794 3.35068 3.56044 3.90837 4.15336 4.33921 4.46446 4.55852 4.87681 5.00452 5.24736 5.28542 5.30804 5.34241 5.54647 5.65513 5.69623 5.82176 5.86976 5.98785 6.00335 6.35715 6.58320 6.62967 6.67199 6.94575 7.17545 7.36597 7.46368 7.59039 7.64529 7.70936 7.74460 7.96278 8.25161 8.49856 8.62689 8.68956 9.98866 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.004212 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.265263 B = 6645.683468 C = 6750.656836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.102 3.898 3 H 0.105 0.895 4 O -0.539 6.539 5 C 0.114 3.886 6 H 0.104 0.896 7 C 0.069 3.931 8 O -0.551 6.551 9 N -0.721 5.721 10 C 0.566 3.434 11 O -0.549 6.549 12 C -0.109 4.109 13 C -0.215 4.215 14 C -0.083 4.083 15 C -0.221 4.221 16 C 0.082 3.918 17 C -0.443 4.443 18 H 0.094 0.906 19 C 0.084 3.916 20 N -0.803 5.803 21 Si 0.911 3.089 22 H -0.269 1.269 23 H -0.289 1.289 24 H -0.244 1.244 25 C -0.136 4.136 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.370 0.630 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.370 0.630 33 H 0.398 0.602 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.287 0.713 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.313 11.143 12.071 16.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.042 3.958 3 H 0.123 0.877 4 O -0.343 6.343 5 C 0.008 3.992 6 H 0.122 0.878 7 C -0.010 4.010 8 O -0.355 6.355 9 N -0.375 5.375 10 C 0.357 3.643 11 O -0.428 6.428 12 C -0.112 4.112 13 C -0.235 4.235 14 C -0.101 4.101 15 C -0.241 4.241 16 C 0.079 3.921 17 C -0.471 4.471 18 H 0.111 0.889 19 C -0.136 4.136 20 N -0.427 5.427 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.216 1.216 24 H -0.167 1.167 25 C -0.156 4.156 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.218 0.782 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.216 0.784 33 H 0.235 0.765 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.097 0.903 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.134 11.909 11.330 16.949 hybrid contribution 0.408 -1.304 0.517 1.461 sum 4.542 10.605 11.847 16.536 Atomic orbital electron populations 1.22520 0.96124 1.03177 1.02713 1.22076 0.93003 0.96527 0.84198 0.87705 1.86611 1.77056 1.28457 1.42184 1.21800 0.91762 0.85329 1.00299 0.87787 1.22475 0.94940 0.96358 0.87249 1.86584 1.27421 1.82309 1.39197 1.45822 1.64548 1.17232 1.09857 1.18803 0.77018 0.86085 0.82417 1.90692 1.50336 1.67399 1.34378 1.19405 1.03786 0.92629 0.95363 1.20365 1.10563 0.97386 0.95213 1.20515 0.98352 0.94595 0.96637 1.21182 1.08617 1.00998 0.93287 1.17698 0.89535 0.91913 0.92988 1.19523 1.41548 0.91440 0.94561 0.88851 1.26166 0.92256 0.98212 0.96949 1.69693 1.32439 1.10834 1.29708 0.86309 0.80694 0.78515 0.80771 1.19523 1.21623 1.16705 1.21265 1.02306 0.96399 0.95614 0.91684 0.91489 0.91841 0.78238 0.93173 0.93427 0.78394 0.76544 0.88706 0.88251 0.87877 0.90286 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.76 9.32 37.16 0.35 -1.41 16 2 C 0.10 1.02 3.45 -26.73 -0.09 0.93 16 3 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 4 O -0.54 -5.98 10.94 -58.58 -0.64 -6.62 16 5 C 0.11 1.37 2.36 -67.93 -0.16 1.21 16 6 H 0.10 1.33 7.58 -51.93 -0.39 0.94 16 7 C 0.07 0.81 6.85 37.16 0.25 1.06 16 8 O -0.55 -6.19 11.13 -58.58 -0.65 -6.84 16 9 N -0.72 -10.18 4.19 -54.74 -0.23 -10.41 16 10 C 0.57 10.72 7.74 -12.31 -0.10 10.62 16 11 O -0.55 -11.89 16.00 5.32 0.09 -11.80 16 12 C -0.11 -2.28 5.87 -105.04 -0.62 -2.89 16 13 C -0.22 -4.08 9.55 -38.92 -0.37 -4.45 16 14 C -0.08 -1.66 10.01 -39.72 -0.40 -2.06 16 15 C -0.22 -5.10 7.17 -38.81 -0.28 -5.38 16 16 C 0.08 2.04 5.10 -106.87 -0.55 1.49 16 17 C -0.44 -11.82 9.57 -37.73 -0.36 -12.18 16 18 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 19 C 0.08 2.15 5.40 -17.34 -0.09 2.06 16 20 N -0.80 -21.03 13.93 55.55 0.77 -20.26 16 21 Si 0.91 20.23 24.52 -169.99 -4.17 16.06 16 22 H -0.27 -5.73 6.71 56.52 0.38 -5.35 16 23 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.24 -5.56 6.86 56.52 0.39 -5.17 16 25 C -0.14 -3.23 9.34 -38.44 -0.36 -3.59 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.63 7.13 -51.93 -0.37 0.26 16 29 H 0.37 3.60 7.75 45.56 0.35 3.96 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.37 2.84 9.12 45.56 0.42 3.26 16 33 H 0.40 4.96 4.93 -40.82 -0.20 4.76 16 34 H 0.09 1.44 6.38 -52.48 -0.33 1.10 16 35 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.10 2.36 4.72 -52.48 -0.25 2.11 16 37 H 0.29 6.77 8.30 -40.82 -0.34 6.43 16 38 H 0.11 2.79 7.64 -52.49 -0.40 2.39 16 LS Contribution 313.45 15.07 4.72 4.72 Total: -1.00 -30.05 313.45 -6.19 -36.24 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -3.31 Total: 13.50 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -2.77 Total: -14.59 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.54 Total: -30.66 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.21 Total: -25.27 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.17 Total: 16.06 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.05 -6.19 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822527310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.246 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds