Wall clock time and date at job start Tue Mar 31 2020 01:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35906 * 116.99868 * 2 1 4 4 C 1.38756 * 120.05432 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94221 * 180.02562 * 4 3 2 6 6 C 1.38292 * 120.05319 * 0.02562 * 5 4 3 7 7 C 1.38240 * 120.11181 * 0.02562 * 6 5 4 8 8 C 1.38162 * 120.05961 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.03041 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46996 * 138.11972 * 9 8 7 11 11 C 1.52995 * 109.46988 * 18.12211 * 9 8 7 12 12 N 1.46500 * 109.46978 * 258.12048 * 9 8 7 13 13 O 1.41603 * 119.99804 * 234.11625 * 12 9 8 14 14 C 1.42899 * 113.99937 * 88.37427 * 13 12 9 15 15 C 1.34779 * 120.00104 * 54.12096 * 12 9 8 16 16 O 1.21683 * 119.99658 * 5.50193 * 15 12 9 17 17 C 1.46374 * 120.00025 * 185.50327 * 15 12 9 18 18 H 1.08005 * 119.99546 * 0.02562 * 17 15 12 19 19 C 1.40047 * 120.00082 * 179.97438 * 17 15 12 20 20 N 1.30672 * 119.99979 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00081 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46793 * 90.00493 * 21 19 17 23 23 H 1.48496 * 109.47221 * 210.00365 * 21 19 17 24 24 H 1.48497 * 109.47143 * 330.00631 * 21 19 17 25 25 H 1.08990 * 109.47254 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47065 * 300.00337 * 1 2 3 27 27 H 1.09000 * 109.47106 * 60.00010 * 1 2 3 28 28 H 1.08000 * 120.02848 * 0.04950 * 4 3 2 29 29 H 1.07992 * 119.97039 * 179.72221 * 5 4 3 30 30 H 1.08001 * 119.93995 * 179.97438 * 6 5 4 31 31 H 1.08002 * 119.97253 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47377 * 59.99932 * 11 9 8 33 33 H 1.09004 * 109.47274 * 180.02562 * 11 9 8 34 34 H 1.08997 * 109.47409 * 299.99690 * 11 9 8 35 35 H 1.09000 * 109.46798 * 180.53742 * 14 13 12 36 36 H 1.09000 * 109.46862 * 300.53733 * 14 13 12 37 37 H 1.09003 * 109.46843 * 60.53873 * 14 13 12 38 38 H 0.96996 * 120.00105 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3754 -0.0005 5 6 1.9208 3.6049 -0.0011 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0021 8 6 3.4311 1.2849 -0.0016 9 6 4.2538 0.0222 -0.0016 10 1 3.8112 -0.6997 0.6848 11 6 5.6810 0.3433 0.4464 12 7 4.2816 -0.5425 -1.3531 13 8 3.8918 -1.8869 -1.5669 14 6 2.4929 -2.0556 -1.8054 15 6 4.6783 0.2176 -2.3930 16 8 5.1080 1.3392 -2.1978 17 6 4.5921 -0.3060 -3.7572 18 1 4.2103 -1.3013 -3.9304 19 6 5.0038 0.4840 -4.8378 20 7 5.4653 1.6884 -4.6282 21 14 4.8945 -0.1845 -6.5786 22 1 3.5692 0.1544 -7.1567 23 1 5.9663 0.4206 -7.4095 24 1 5.0611 -1.6599 -6.5537 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 0.2128 2.3204 -0.0001 29 1 1.3340 4.5114 -0.0060 30 1 3.7922 4.6382 -0.0024 31 1 5.1344 2.5752 -0.0021 32 1 5.6603 0.7635 1.4520 33 1 6.2761 -0.5699 0.4460 34 1 6.1235 1.0652 -0.2399 35 1 2.2740 -3.1135 -1.9500 36 1 1.9308 -1.6818 -0.9496 37 1 2.2071 -1.5000 -2.6986 38 1 5.7508 2.2354 -5.3766 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855128521.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:05 Heat of formation + Delta-G solvation = -30.731525 kcal Electronic energy + Delta-G solvation = -23297.771409 eV Core-core repulsion = 19915.675875 eV Total energy + Delta-G solvation = -3382.095534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.95830 -37.88633 -36.86390 -35.51043 -33.81165 -32.31017 -30.02202 -29.57289 -28.43287 -26.87136 -26.24808 -25.36834 -23.40805 -21.53970 -20.95339 -18.95518 -17.81172 -17.52894 -15.94569 -15.60138 -15.47221 -15.38306 -14.84153 -14.48081 -14.18805 -13.86848 -13.65177 -13.09743 -13.01983 -12.67088 -12.40857 -12.21972 -11.68891 -11.60399 -11.49973 -11.39459 -11.17770 -11.01370 -10.87268 -10.73408 -10.42536 -10.33842 -10.22774 -10.05672 -9.27756 -8.83485 -8.42293 -7.77646 -7.38659 -7.36823 -6.16025 -4.58083 1.82807 1.98891 3.15029 3.22388 3.26207 3.41229 3.57830 4.17744 4.37747 4.55388 5.10021 5.17960 5.26896 5.32720 5.51448 5.53717 5.62328 5.76080 5.79971 5.92196 5.94259 6.05461 6.15833 6.25381 6.30139 6.34129 6.45653 6.52818 6.57444 6.81823 6.88703 7.09511 7.15490 7.34879 7.49399 7.80122 7.91826 8.12750 8.42032 9.06470 9.49727 10.55947 10.74597 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.007456 C = 0.006796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.979604 B = 3754.582572 C = 4119.114302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.221 4.221 5 C -0.087 4.087 6 C -0.164 4.164 7 C -0.023 4.023 8 C -0.112 4.112 9 C 0.203 3.797 10 H 0.079 0.921 11 C -0.163 4.163 12 N -0.489 5.489 13 O -0.153 6.153 14 C -0.005 4.005 15 C 0.566 3.434 16 O -0.549 6.549 17 C -0.529 4.529 18 H 0.071 0.929 19 C 0.087 3.913 20 N -0.767 5.767 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.279 1.279 24 H -0.264 1.264 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.136 0.864 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.046 0.954 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -0.774 9.010 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.086 3.914 4 C -0.240 4.240 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.041 4.041 8 C -0.114 4.114 9 C 0.100 3.900 10 H 0.097 0.903 11 C -0.221 4.221 12 N -0.273 5.273 13 O -0.157 6.157 14 C -0.104 4.104 15 C 0.374 3.626 16 O -0.431 6.431 17 C -0.566 4.566 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.397 5.397 21 Si 0.729 3.271 22 H -0.199 1.199 23 H -0.204 1.204 24 H -0.188 1.188 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.135 0.865 31 H 0.153 0.847 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.802 -0.357 9.026 11.936 hybrid contribution -0.895 -0.263 -1.161 1.490 sum -8.697 -0.619 7.865 11.742 Atomic orbital electron populations 1.22948 0.79591 1.03256 1.00969 1.86092 1.20393 1.27056 1.88778 1.18843 0.91789 0.83887 0.96859 1.20993 0.99142 0.92549 1.11282 1.20782 0.94750 0.96420 0.98613 1.20995 0.93728 0.98421 1.05067 1.20990 1.00587 0.90414 0.92122 1.19550 0.90078 0.96536 1.05273 1.19486 0.94344 0.90809 0.85319 0.90264 1.22266 0.96504 1.02796 1.00538 1.50885 1.68527 1.02241 1.05688 1.90485 1.22542 1.09419 1.93240 1.23297 0.85590 1.00351 1.01158 1.18343 0.77220 0.83429 0.83624 1.90591 1.50570 1.18829 1.83098 1.20953 1.44337 1.02029 0.89252 0.91061 1.25710 0.92987 0.94194 1.00332 1.69995 1.30274 1.07486 1.31908 0.86413 0.78283 0.80047 0.82325 1.19903 1.20441 1.18818 0.88781 0.93145 0.92939 0.86355 0.86720 0.86504 0.84662 0.92880 0.92662 0.89612 0.90649 0.92432 0.93505 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.76 101.05 0.99 1.32 16 2 O -0.31 -5.23 6.87 -19.45 -0.13 -5.36 16 3 C 0.13 2.46 6.66 -39.22 -0.26 2.20 16 4 C -0.22 -3.67 9.04 -39.43 -0.36 -4.03 16 5 C -0.09 -1.42 10.04 -39.60 -0.40 -1.82 16 6 C -0.16 -2.91 10.04 -39.56 -0.40 -3.30 16 7 C -0.02 -0.45 7.39 -39.61 -0.29 -0.75 16 8 C -0.11 -2.30 4.44 -104.47 -0.46 -2.76 16 9 C 0.20 4.23 2.82 -69.08 -0.20 4.03 16 10 H 0.08 1.54 7.90 -51.93 -0.41 1.13 16 11 C -0.16 -3.12 8.12 37.16 0.30 -2.81 16 12 N -0.49 -11.90 2.89 -56.34 -0.16 -12.06 16 13 O -0.15 -3.49 10.51 -11.47 -0.12 -3.61 16 14 C -0.01 -0.10 11.15 101.05 1.13 1.02 16 15 C 0.57 16.08 7.10 -12.99 -0.09 15.99 16 16 O -0.55 -16.42 10.83 5.20 0.06 -16.36 16 17 C -0.53 -15.32 8.93 -35.63 -0.32 -15.64 16 18 H 0.07 2.00 6.97 -52.48 -0.37 1.63 16 19 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 20 N -0.77 -22.65 11.83 55.55 0.66 -21.99 16 21 Si 0.90 20.62 29.56 -169.99 -5.02 15.59 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.26 -5.91 7.11 56.52 0.40 -5.50 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 27 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 28 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.14 2.74 5.76 -52.49 -0.30 2.44 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.88 5.10 -51.93 -0.26 1.61 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.02 4.96 -51.93 -0.26 0.76 16 37 H 0.05 0.97 7.86 -51.93 -0.41 0.56 16 38 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 LS Contribution 311.95 15.07 4.70 4.70 Total: -1.00 -33.66 311.95 -5.29 -38.95 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.81 Total: 4.34 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.46 Total: -4.20 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.49 Total: -34.05 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.20 Total: -25.33 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.66 -5.29 -38.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855128521.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.214 kcal (2) G-P(sol) polarization free energy of solvation -33.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds