Wall clock time and date at job start Tue Mar 31 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53007 * 109.47183 * 2 1 4 4 O 1.42903 * 109.47423 * 240.00316 * 2 1 3 5 5 C 1.35801 * 116.99664 * 272.52584 * 4 2 1 6 6 C 1.38857 * 119.92421 * 2.87903 * 5 4 2 7 7 C 1.37772 * 120.15259 * 179.72886 * 6 5 4 8 8 C 1.39773 * 119.99889 * 0.54080 * 7 6 5 9 9 C 1.47501 * 120.07567 * 179.75156 * 8 7 6 10 10 O 1.21622 * 120.00003 * 327.14976 * 9 8 7 11 11 N 1.34778 * 119.99647 * 147.14543 * 9 8 7 12 12 C 1.46494 * 120.00285 * 355.47568 * 11 9 8 13 13 C 1.36904 * 119.99709 * 175.47144 * 11 9 8 14 14 H 1.07998 * 119.99838 * 326.07534 * 13 11 9 15 15 C 1.39018 * 119.99888 * 146.06835 * 13 11 9 16 16 N 1.31381 * 119.99850 * 160.42379 * 15 13 11 17 17 Si 1.86800 * 120.00135 * 340.42127 * 15 13 11 18 18 H 1.48504 * 109.47042 * 94.58485 * 17 15 13 19 19 H 1.48500 * 109.47397 * 214.58229 * 17 15 13 20 20 H 1.48498 * 109.47214 * 334.58608 * 17 15 13 21 21 C 1.39787 * 119.84421 * 359.72914 * 8 7 6 22 22 C 1.38125 * 119.85221 * 0.02562 * 21 8 7 23 23 O 1.35995 * 120.00319 * 179.97438 * 22 21 8 24 24 H 1.08997 * 109.47604 * 299.99933 * 1 2 3 25 25 H 1.09007 * 109.47314 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47404 * 59.99932 * 1 2 3 27 27 H 1.09000 * 109.47404 * 120.00067 * 2 1 3 28 28 H 1.08997 * 109.46795 * 59.99572 * 3 2 1 29 29 H 1.08991 * 109.47100 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47005 * 300.00311 * 3 2 1 31 31 H 1.08002 * 119.91815 * 359.97438 * 6 5 4 32 32 H 1.07999 * 120.00024 * 180.27759 * 7 6 5 33 33 H 1.09002 * 109.47435 * 89.18084 * 12 11 9 34 34 H 1.09000 * 109.47395 * 209.18088 * 12 11 9 35 35 H 1.08998 * 109.47224 * 329.17927 * 12 11 9 36 36 H 0.97005 * 119.99642 * 180.02562 * 16 15 13 37 37 H 1.07999 * 120.07515 * 180.02562 * 21 8 7 38 38 H 0.96697 * 114.00147 * 270.02434 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.1616 -2.0200 -1.0812 6 6 1.8041 -2.6858 0.0838 7 6 1.9544 -4.0523 0.1737 8 6 2.4783 -4.7703 -0.9050 9 6 2.6450 -6.2327 -0.8085 10 8 2.9158 -6.7446 0.2610 11 7 2.4971 -7.0016 -1.9055 12 6 2.0741 -6.3980 -3.1715 13 6 2.7424 -8.3467 -1.8367 14 1 3.5171 -8.7216 -1.1842 15 6 1.9943 -9.2299 -2.6066 16 7 2.4492 -10.4385 -2.8483 17 14 0.3421 -8.6984 -3.2974 18 1 0.5245 -8.1894 -4.6806 19 1 -0.5836 -9.8594 -3.3154 20 1 -0.2280 -7.6238 -2.4457 21 6 2.8433 -4.0992 -2.0757 22 6 2.6853 -2.7297 -2.1609 23 8 3.0399 -2.0737 -3.2982 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6765 1.9563 0.8899 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.4037 -2.1315 0.9197 32 1 1.6714 -4.5682 1.0793 33 1 2.9514 -6.0687 -3.7282 34 1 1.5258 -7.1339 -3.7596 35 1 1.4301 -5.5422 -2.9688 36 1 1.9273 -11.0547 -3.3858 37 1 3.2481 -4.6504 -2.9116 38 1 3.9580 -1.7702 -3.3072 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198292922.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:37 Heat of formation + Delta-G solvation = -62.721912 kcal Electronic energy + Delta-G solvation = -21928.434967 eV Core-core repulsion = 18544.952226 eV Total energy + Delta-G solvation = -3383.482741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.58058 -39.04137 -37.81141 -36.06368 -34.89950 -33.34493 -32.21829 -30.36588 -29.15356 -27.56847 -26.62680 -25.31462 -23.59064 -22.44525 -21.09722 -19.65348 -18.44658 -17.48323 -17.17284 -16.50992 -16.03663 -15.76785 -15.46295 -14.71072 -14.67821 -14.45667 -14.28202 -13.57451 -13.45419 -13.01119 -12.87477 -12.63714 -12.53111 -12.41258 -12.31516 -12.05664 -11.80775 -11.68671 -11.47864 -10.99693 -10.92521 -10.72089 -10.53252 -10.25501 -9.87236 -9.16663 -8.74048 -8.59638 -7.97882 -7.84596 -6.47092 -3.99618 1.23323 1.35069 2.99773 3.03959 3.18863 3.23638 3.42362 4.03545 4.07600 4.23772 4.48538 4.51076 4.63599 4.76293 4.93572 4.97012 5.08466 5.24011 5.31237 5.42631 5.44282 5.45988 5.51404 5.66101 5.79428 5.81865 5.88806 5.89886 6.06512 6.20743 6.25935 6.34684 6.63869 6.72905 7.23887 7.46345 7.79941 8.18627 8.44015 8.87857 9.22736 9.70175 10.64198 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.029770 B = 0.004419 C = 0.004309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.319692 B = 6334.603515 C = 6496.522427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.071 3.929 3 C -0.148 4.148 4 O -0.301 6.301 5 C 0.110 3.890 6 C -0.206 4.206 7 C -0.042 4.042 8 C -0.123 4.123 9 C 0.494 3.506 10 O -0.565 6.565 11 N -0.455 5.455 12 C 0.057 3.943 13 C -0.312 4.312 14 H 0.111 0.889 15 C 0.057 3.943 16 N -0.858 5.858 17 Si 0.888 3.112 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.265 1.265 21 C -0.094 4.094 22 C 0.063 3.937 23 O -0.485 6.485 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.276 0.724 37 H 0.150 0.850 38 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 21.540 1.694 21.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.015 3.985 3 C -0.205 4.205 4 O -0.215 6.215 5 C 0.063 3.937 6 C -0.225 4.225 7 C -0.061 4.061 8 C -0.127 4.127 9 C 0.284 3.716 10 O -0.448 6.448 11 N -0.175 5.175 12 C -0.086 4.086 13 C -0.439 4.439 14 H 0.129 0.871 15 C -0.150 4.150 16 N -0.494 5.494 17 Si 0.716 3.284 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.189 1.189 21 C -0.113 4.113 22 C 0.018 3.982 23 O -0.294 6.294 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.168 0.832 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -2.852 21.070 1.795 21.338 hybrid contribution -0.528 0.184 -0.232 0.605 sum -3.380 21.254 1.564 21.578 Atomic orbital electron populations 1.22348 0.94989 1.03305 1.02973 1.22486 0.94488 0.93637 0.87872 1.21851 1.02038 0.93648 1.02949 1.86142 1.80890 1.16643 1.37812 1.19537 0.97577 0.82852 0.93700 1.21078 1.08306 0.95321 0.97753 1.21024 0.94607 0.92478 0.97989 1.20143 1.03045 0.95302 0.94189 1.17936 0.84277 0.85129 0.84252 1.90656 1.52623 1.74246 1.27323 1.43628 1.59654 1.08186 1.06071 1.22385 0.99604 0.98381 0.88233 1.19170 1.18406 0.78886 1.27439 0.87134 1.25391 0.97880 0.95123 0.96600 1.69708 1.37197 1.06839 1.35667 0.86819 0.84238 0.78412 0.78886 1.20090 1.21506 1.18916 1.21950 0.98533 0.92664 0.98198 1.17544 1.05154 0.89526 0.85959 1.84902 1.33521 1.75581 1.35380 0.91095 0.91684 0.91446 0.90645 0.90626 0.91720 0.91492 0.84799 0.84660 0.92364 0.92160 0.91608 0.91338 0.83248 0.76337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.28 37.15 0.34 -1.18 16 2 C 0.07 0.67 2.83 -26.73 -0.08 0.59 16 3 C -0.15 -1.06 9.56 37.16 0.36 -0.71 16 4 O -0.30 -3.88 9.56 -33.77 -0.32 -4.20 16 5 C 0.11 1.58 6.65 -38.91 -0.26 1.32 16 6 C -0.21 -2.86 8.40 -39.52 -0.33 -3.19 16 7 C -0.04 -0.70 9.59 -39.18 -0.38 -1.08 16 8 C -0.12 -2.37 5.26 -104.97 -0.55 -2.93 16 9 C 0.49 12.02 7.34 -12.48 -0.09 11.93 16 10 O -0.57 -15.74 16.63 5.26 0.09 -15.65 16 11 N -0.46 -11.35 2.66 -123.40 -0.33 -11.68 16 12 C 0.06 1.17 7.55 59.84 0.45 1.62 16 13 C -0.31 -8.93 9.44 -15.00 -0.14 -9.07 16 14 H 0.11 3.52 7.88 -52.49 -0.41 3.11 16 15 C 0.06 1.57 5.37 -17.46 -0.09 1.48 16 16 N -0.86 -24.71 13.96 55.50 0.77 -23.94 16 17 Si 0.89 20.86 24.73 -169.99 -4.20 16.66 16 18 H -0.27 -5.96 6.69 56.52 0.38 -5.58 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.26 -6.23 7.07 56.52 0.40 -5.83 16 21 C -0.09 -1.58 7.57 -39.04 -0.30 -1.88 16 22 C 0.06 0.96 6.71 -39.18 -0.26 0.70 16 23 O -0.49 -6.56 13.28 -34.38 -0.46 -7.01 16 24 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.63 7.38 -51.92 -0.38 0.24 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.66 6.00 -51.93 -0.31 0.35 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.13 1.47 5.59 -52.49 -0.29 1.18 16 32 H 0.14 2.24 7.96 -52.49 -0.42 1.82 16 33 H 0.06 1.04 6.67 -51.93 -0.35 0.70 16 34 H 0.06 1.30 2.57 -51.93 -0.13 1.17 16 35 H 0.07 1.22 6.00 -51.93 -0.31 0.91 16 36 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.15 2.41 5.05 -52.49 -0.27 2.15 16 38 H 0.38 3.39 9.06 45.56 0.41 3.80 16 LS Contribution 310.43 15.07 4.68 4.68 Total: -1.00 -33.77 310.43 -4.84 -38.60 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -3.74 Total: 4.92 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -1.33 Total: -2.39 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.45 Total: -35.62 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.69 Total: -26.86 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.20 Total: 16.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.77 -4.84 -38.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198292922.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.120 kcal (2) G-P(sol) polarization free energy of solvation -33.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds