Wall clock time and date at job start Tue Mar 31 2020 00:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35995 * 116.99655 * 2 1 4 4 C 1.38564 * 120.07625 * 359.72270 * 3 2 1 5 5 C 1.38245 * 119.99792 * 179.79495 * 4 3 2 6 6 C 1.38247 * 120.14929 * 0.45790 * 5 4 3 7 7 C 1.50701 * 119.93158 * 179.77035 * 6 5 4 8 8 C 1.53003 * 109.47173 * 270.02640 * 7 6 5 9 9 N 1.46491 * 109.47109 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99990 * 179.97438 * 9 8 7 11 11 O 1.21687 * 119.99680 * 0.02562 * 10 9 8 12 12 C 1.46371 * 119.99962 * 180.02562 * 10 9 8 13 13 H 1.08003 * 119.99864 * 0.02562 * 12 10 9 14 14 C 1.40055 * 120.00049 * 180.02562 * 12 10 9 15 15 N 1.30667 * 119.99628 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00046 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47351 * 90.00102 * 16 14 12 18 18 H 1.48505 * 109.46938 * 210.00315 * 16 14 12 19 19 H 1.48503 * 109.47076 * 329.99979 * 16 14 12 20 20 C 1.38241 * 120.14550 * 359.79719 * 6 5 4 21 21 C 1.38563 * 119.99940 * 359.97369 * 20 6 5 22 22 O 1.35997 * 120.07546 * 180.02562 * 21 20 6 23 23 C 1.42902 * 116.99582 * 359.97438 * 22 21 20 24 24 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47144 * 300.00182 * 1 2 3 26 26 H 1.08998 * 109.47043 * 59.99780 * 1 2 3 27 27 H 1.07997 * 120.00260 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.92433 * 180.21315 * 5 4 3 29 29 H 1.09000 * 109.46763 * 30.02282 * 7 6 5 30 30 H 1.08993 * 109.47638 * 150.02455 * 7 6 5 31 31 H 1.08995 * 109.46896 * 300.00239 * 8 7 6 32 32 H 1.09001 * 109.46846 * 59.99702 * 8 7 6 33 33 H 0.96999 * 120.00037 * 0.02562 * 9 8 7 34 34 H 0.96998 * 120.00080 * 180.02562 * 15 14 12 35 35 H 1.08004 * 120.00331 * 179.97438 * 20 6 5 36 36 H 1.08998 * 109.47287 * 299.99772 * 23 22 21 37 37 H 1.09001 * 109.47198 * 60.00379 * 23 22 21 38 38 H 1.09007 * 109.46665 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2932 2.3748 -0.0058 5 6 1.9224 3.6058 -0.0015 6 6 3.3028 3.6799 -0.0010 7 6 3.9836 5.0244 -0.0015 8 6 4.2140 5.4788 -1.4442 9 7 4.8753 6.7860 -1.4447 10 6 5.1801 7.3866 -2.6122 11 8 4.9056 6.8431 -3.6658 12 6 5.8413 8.6925 -2.6128 13 1 6.0853 9.1746 -1.6776 14 6 6.1575 9.3168 -3.8259 15 7 5.8619 8.7337 -4.9572 16 14 7.0020 10.9830 -3.8265 17 1 8.4746 10.7917 -3.8269 18 1 6.6009 11.7407 -5.0392 19 1 6.6016 11.7413 -2.6141 20 6 4.0602 2.5235 -0.0005 21 6 3.4359 1.2864 0.0000 22 8 4.1795 0.1478 0.0010 23 6 5.6003 0.3008 0.0009 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.2146 2.3197 -0.0099 28 1 1.3341 4.5115 -0.0026 29 1 3.3537 5.7508 0.5120 30 1 4.9417 4.9468 0.5123 31 1 4.8438 4.7524 -1.9577 32 1 3.2559 5.5565 -1.9581 33 1 5.0944 7.2190 -0.6049 34 1 6.0812 9.1659 -5.7975 35 1 5.1386 2.5841 -0.0005 36 1 5.9066 0.8498 -0.8896 37 1 5.9065 0.8513 0.8904 38 1 6.0716 -0.6821 0.0022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000165210.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:06 Heat of formation + Delta-G solvation = -94.680605 kcal Electronic energy + Delta-G solvation = -20864.174638 eV Core-core repulsion = 17479.306064 eV Total energy + Delta-G solvation = -3384.868574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.61865 -38.50936 -37.74447 -36.92673 -33.99863 -32.42298 -31.30967 -30.37712 -28.62620 -27.35169 -26.99570 -25.77411 -22.92080 -22.22471 -20.95192 -19.66000 -18.48649 -17.28748 -16.93402 -16.76208 -16.14461 -15.33336 -15.31350 -14.83275 -14.69943 -14.58195 -14.30054 -14.15961 -13.62333 -13.19609 -12.83817 -12.36560 -12.34721 -12.05766 -11.92672 -11.61633 -11.28198 -11.27691 -11.23357 -11.05179 -10.99251 -10.68697 -10.56441 -10.42377 -10.20594 -8.84055 -8.72328 -7.79375 -7.58630 -7.48097 -6.16951 -4.62608 1.25212 1.40781 3.14783 3.17395 3.20967 3.21446 3.24923 3.66556 4.11731 4.60967 4.64034 4.70189 4.86530 4.98151 4.99453 5.06411 5.10996 5.21306 5.25224 5.31416 5.39978 5.42606 5.47182 5.60701 5.68419 5.84044 5.93081 6.14408 6.23139 6.45062 6.60998 6.65296 6.73557 6.96423 7.44636 7.51130 7.95079 8.11703 8.34400 9.03847 9.56030 10.62075 10.80815 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.030719 B = 0.003046 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.261279 B = 9189.527066 C = 9542.608990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.111 4.111 6 C -0.065 4.065 7 C -0.089 4.089 8 C 0.140 3.860 9 N -0.770 5.770 10 C 0.554 3.446 11 O -0.581 6.581 12 C -0.546 4.546 13 H 0.067 0.933 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.908 3.092 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.166 4.166 21 C 0.099 3.901 22 O -0.309 6.309 23 C 0.025 3.975 24 H 0.097 0.903 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.133 0.867 28 H 0.128 0.872 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.380 0.620 34 H 0.268 0.732 35 H 0.136 0.864 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.651 -14.065 13.001 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.224 6.224 3 C 0.043 3.957 4 C -0.188 4.188 5 C -0.130 4.130 6 C -0.066 4.066 7 C -0.126 4.126 8 C 0.015 3.985 9 N -0.425 5.425 10 C 0.358 3.642 11 O -0.464 6.464 12 C -0.583 4.583 13 H 0.086 0.914 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.189 1.189 20 C -0.185 4.185 21 C 0.054 3.946 22 O -0.223 6.223 23 C -0.070 4.070 24 H 0.116 0.884 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.211 0.789 34 H 0.079 0.921 35 H 0.154 0.846 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.838 -14.870 11.993 20.290 hybrid contribution 0.474 1.313 0.365 1.443 sum -6.364 -13.557 12.358 19.417 Atomic orbital electron populations 1.23032 0.78863 1.03708 1.01203 1.86148 1.20775 1.26099 1.89334 1.18208 0.89101 0.85120 1.03237 1.21024 0.99787 0.91470 1.06556 1.20802 0.93936 0.97148 1.01075 1.19546 0.93318 0.94606 0.99149 1.20808 1.00475 0.92876 0.98484 1.20810 0.97418 0.87139 0.93165 1.46156 1.66815 1.20081 1.09493 1.18227 0.78797 0.85896 0.81328 1.90602 1.57940 1.67038 1.30808 1.20890 1.41246 1.02955 0.93226 0.91438 1.25718 0.94118 0.98383 0.95067 1.70024 1.35544 1.36289 0.97872 0.86374 0.79812 0.82163 0.78391 1.19768 1.20475 1.18928 1.20999 1.00479 0.90514 1.06486 1.18205 0.88189 0.86031 1.02161 1.86140 1.18668 1.28333 1.89165 1.23075 0.78647 1.03706 1.01554 0.88438 0.92863 0.92715 0.84878 0.85358 0.90526 0.90775 0.93416 0.93271 0.78901 0.92130 0.84626 0.92399 0.92721 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.02 10.28 -34.23 -0.35 -4.37 16 3 C 0.09 1.21 6.70 -39.12 -0.26 0.95 16 4 C -0.17 -2.05 9.04 -39.46 -0.36 -2.40 16 5 C -0.11 -1.42 9.69 -39.58 -0.38 -1.80 16 6 C -0.07 -0.90 5.13 -104.62 -0.54 -1.43 16 7 C -0.09 -1.25 5.45 -27.88 -0.15 -1.40 16 8 C 0.14 2.71 5.66 -4.04 -0.02 2.69 16 9 N -0.77 -17.27 5.55 -61.73 -0.34 -17.61 16 10 C 0.55 15.98 7.75 -12.99 -0.10 15.88 16 11 O -0.58 -19.22 15.02 5.20 0.08 -19.14 16 12 C -0.55 -15.53 9.54 -35.63 -0.34 -15.87 16 13 H 0.07 1.75 7.85 -52.48 -0.41 1.33 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 15 N -0.77 -23.31 11.83 55.55 0.66 -22.66 16 16 Si 0.91 20.20 29.56 -169.99 -5.02 15.17 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 C -0.17 -2.24 8.69 -39.46 -0.34 -2.58 16 21 C 0.10 1.41 6.70 -39.12 -0.26 1.15 16 22 O -0.31 -4.22 10.28 -34.24 -0.35 -4.57 16 23 C 0.03 0.24 9.81 101.05 0.99 1.24 16 24 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.36 7.67 -51.93 -0.40 -0.03 16 26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 27 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 28 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 29 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 30 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.38 7.32 8.45 -40.82 -0.35 6.98 16 34 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 35 H 0.14 1.62 6.30 -52.48 -0.33 1.29 16 36 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 37 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 38 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 327.95 15.07 4.94 4.94 Total: -1.00 -36.91 327.95 -6.36 -43.27 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.10 Total: 5.00 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.87 Total: -0.04 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.31 Total: -40.26 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.63 Total: -28.08 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.91 -6.36 -43.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000165210.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.410 kcal (2) G-P(sol) polarization free energy of solvation -36.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds