Wall clock time and date at job start Tue Mar 31 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.53002 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46862 * 174.99580 * 4 3 2 6 6 C 1.53005 * 109.47050 * 55.00286 * 4 3 2 7 7 O 1.42906 * 109.46519 * 304.99787 * 6 4 3 8 8 N 1.46496 * 109.47213 * 294.99933 * 4 3 2 9 9 C 1.34782 * 119.99646 * 204.99786 * 8 4 3 10 10 O 1.21547 * 120.00006 * 0.02562 * 9 8 4 11 11 C 1.47888 * 119.99541 * 180.02562 * 9 8 4 12 12 C 1.39924 * 120.02641 * 359.72573 * 11 9 8 13 13 C 1.38328 * 120.35251 * 179.71566 * 12 11 9 14 14 C 1.37753 * 120.41467 * 0.56202 * 13 12 11 15 15 C 1.40748 * 120.03963 * 359.72090 * 14 13 12 16 16 C 1.41437 * 120.17402 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00335 * 334.92894 * 16 15 14 18 18 C 1.39941 * 119.99775 * 154.92912 * 16 15 14 19 19 N 1.30837 * 119.99839 * 342.58417 * 18 16 15 20 20 Si 1.86797 * 120.00289 * 162.58717 * 18 16 15 21 21 H 1.48495 * 109.47200 * 89.99622 * 20 18 16 22 22 H 1.48498 * 109.47030 * 210.00068 * 20 18 16 23 23 H 1.48508 * 109.46662 * 329.99654 * 20 18 16 24 24 C 1.38998 * 120.02315 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47062 * 299.99818 * 1 2 3 26 26 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47181 * 60.00222 * 1 2 3 28 28 H 1.08996 * 109.47383 * 299.99659 * 3 2 1 29 29 H 1.08995 * 109.47310 * 59.99896 * 3 2 1 30 30 H 1.08998 * 109.47466 * 64.99664 * 6 4 3 31 31 H 1.08999 * 109.47257 * 185.00116 * 6 4 3 32 32 H 0.96705 * 113.99630 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00282 * 25.00375 * 8 4 3 34 34 H 1.07992 * 119.81943 * 359.97438 * 12 11 9 35 35 H 1.08006 * 119.78840 * 180.25965 * 13 12 11 36 36 H 1.08000 * 119.97732 * 179.73922 * 14 13 12 37 37 H 0.96995 * 119.99721 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.20187 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9790 0.3195 -1.1807 7 8 3.3075 -0.9408 -1.1265 8 7 3.9756 0.5646 1.2527 9 6 5.2195 0.7948 1.7178 10 8 5.9758 1.5174 1.0986 11 6 5.6641 0.1683 2.9815 12 6 4.7920 -0.6590 3.6976 13 6 5.2027 -1.2532 4.8773 14 6 6.4706 -1.0284 5.3667 15 6 7.3599 -0.1946 4.6632 16 6 8.6625 0.0377 5.1629 17 1 8.8608 -0.0599 6.2200 18 6 9.6945 0.3941 4.2874 19 7 9.5628 0.1869 3.0023 20 14 11.2599 1.1654 4.9536 21 1 12.2391 0.0971 5.2775 22 1 11.8382 2.0736 3.9309 23 1 10.9466 1.9388 6.1820 24 6 6.9466 0.4057 3.4619 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 3.7300 0.8240 -2.1143 31 1 5.0560 0.1599 -1.1300 32 1 3.5414 -1.5423 -1.8467 33 1 3.3720 -0.0118 1.7470 34 1 3.7942 -0.8378 3.3251 35 1 4.5234 -1.8934 5.4205 36 1 6.7825 -1.4926 6.2907 37 1 10.2782 0.4335 2.3956 38 1 7.6217 1.0471 2.9147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280125310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:18 Heat of formation + Delta-G solvation = -113.110897 kcal Electronic energy + Delta-G solvation = -21689.230954 eV Core-core repulsion = 18303.563183 eV Total energy + Delta-G solvation = -3385.667771 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 3.63 seconds Orbital eigenvalues (eV) -39.50152 -38.01763 -36.94229 -36.26524 -34.09023 -33.64566 -30.88340 -29.46070 -29.19032 -26.89003 -25.28553 -25.23667 -22.92607 -21.01159 -20.48860 -19.52010 -17.81909 -17.24308 -16.56985 -16.14049 -15.96246 -15.23432 -15.13299 -14.74189 -14.48153 -14.16713 -13.94715 -13.45527 -13.16968 -12.82986 -12.53377 -12.49633 -12.41445 -11.92477 -11.61674 -11.39509 -11.13427 -11.05339 -10.91375 -10.70810 -10.46207 -10.01218 -9.82077 -9.64442 -9.57900 -9.17886 -8.96428 -8.59068 -7.58111 -7.47067 -6.76320 -4.37663 2.25468 2.84847 3.09574 3.12776 3.19089 3.60265 3.84012 3.92308 3.95280 4.47014 4.68616 4.83281 5.07870 5.21118 5.33016 5.34463 5.46660 5.52026 5.61011 5.62798 5.65452 5.93879 5.99117 6.15899 6.35417 6.76125 6.92555 7.02759 7.06579 7.18582 7.25404 7.42719 7.75612 7.81482 7.86680 7.97382 8.17197 8.25260 8.54619 8.84107 8.87584 9.00295 10.18586 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026782 B = 0.004248 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.228607 B = 6589.400363 C = 7235.728544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.056 3.944 4 C 0.151 3.849 5 H 0.109 0.891 6 C 0.067 3.933 7 O -0.542 6.542 8 N -0.720 5.720 9 C 0.564 3.436 10 O -0.553 6.553 11 C -0.128 4.128 12 C -0.213 4.213 13 C -0.099 4.099 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.462 4.462 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.785 5.785 20 Si 0.909 3.091 21 H -0.270 1.270 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.092 4.092 25 H 0.035 0.965 26 H 0.083 0.917 27 H 0.034 0.966 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.365 0.635 33 H 0.406 0.594 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.646 1.051 -7.127 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.021 4.021 4 C 0.046 3.954 5 H 0.126 0.874 6 C -0.013 4.013 7 O -0.345 6.345 8 N -0.373 5.373 9 C 0.355 3.645 10 O -0.432 6.432 11 C -0.131 4.131 12 C -0.233 4.233 13 C -0.117 4.117 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.491 4.491 17 H 0.099 0.901 18 C -0.145 4.145 19 N -0.410 5.410 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.112 4.112 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.210 0.790 33 H 0.243 0.757 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.095 0.905 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.129 1.705 -7.268 14.242 hybrid contribution 0.452 -0.009 -0.171 0.484 sum -11.676 1.696 -7.439 13.948 Atomic orbital electron populations 1.22717 0.82358 1.02462 0.99253 1.88206 1.18087 1.25814 1.95080 1.22736 0.92847 0.86094 1.00457 1.21057 0.92239 0.97294 0.84856 0.87353 1.22505 0.96377 0.85794 0.96589 1.86732 1.68763 1.26220 1.52801 1.45848 1.15678 1.51755 1.24061 1.18887 0.80471 0.79735 0.85371 1.90676 1.53662 1.38769 1.60061 1.19467 0.96519 1.02440 0.94668 1.20393 0.98164 1.06108 0.98663 1.20442 0.95922 0.99423 0.95939 1.21106 0.95386 1.04045 1.02545 1.17589 0.92843 0.88875 0.91099 1.19565 0.92788 1.41370 0.95373 0.90148 1.25954 1.00719 0.93377 0.94469 1.69799 1.33569 1.33888 1.03698 0.86297 0.80745 0.79729 0.79898 1.19482 1.19996 1.18411 1.21623 0.92793 0.99483 0.97323 0.94610 0.89839 0.94709 0.92525 0.92854 0.93831 0.93038 0.79002 0.75740 0.89067 0.88909 0.88646 0.90528 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.35 -4.54 8.00 -58.58 -0.47 -5.01 16 3 C 0.06 0.66 5.68 37.16 0.21 0.87 16 4 C 0.15 2.21 2.86 -67.93 -0.19 2.01 16 5 H 0.11 1.59 7.58 -51.93 -0.39 1.20 16 6 C 0.07 0.93 6.85 37.16 0.25 1.18 16 7 O -0.54 -7.46 11.17 -58.58 -0.65 -8.11 16 8 N -0.72 -12.75 4.96 -54.73 -0.27 -13.02 16 9 C 0.56 12.62 7.74 -12.31 -0.10 12.53 16 10 O -0.55 -13.79 16.00 5.32 0.09 -13.70 16 11 C -0.13 -3.10 5.87 -105.03 -0.62 -3.72 16 12 C -0.21 -4.68 9.55 -38.92 -0.37 -5.05 16 13 C -0.10 -2.18 10.01 -39.73 -0.40 -2.58 16 14 C -0.21 -5.12 9.78 -38.81 -0.38 -5.50 16 15 C 0.10 2.65 5.57 -106.87 -0.59 2.05 16 16 C -0.46 -12.30 9.05 -37.73 -0.34 -12.64 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 19 N -0.79 -21.05 10.97 55.55 0.61 -20.44 16 20 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 24 C -0.09 -2.50 8.23 -38.44 -0.32 -2.82 16 25 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.37 3.55 9.12 45.56 0.42 3.97 16 33 H 0.41 6.89 6.40 -40.82 -0.26 6.63 16 34 H 0.09 1.73 6.38 -52.49 -0.33 1.39 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 38 H 0.13 3.88 5.77 -52.49 -0.30 3.58 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -31.50 323.88 -6.90 -38.40 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -4.23 Total: 13.57 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.82 Total: -10.48 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.34 Total: -33.46 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -1.04 Total: -26.83 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.50 -6.90 -38.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280125310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.714 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.63 seconds