Wall clock time and date at job start Tue Mar 31 2020 01:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99582 * 2 1 4 4 C 1.53002 * 109.46932 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.46862 * 174.99580 * 4 3 2 6 6 C 1.53005 * 109.47050 * 55.00286 * 4 3 2 7 7 O 1.42906 * 109.46519 * 304.99787 * 6 4 3 8 8 N 1.46496 * 109.47213 * 294.99933 * 4 3 2 9 9 C 1.34782 * 119.99646 * 204.99786 * 8 4 3 10 10 O 1.21547 * 120.00006 * 0.02562 * 9 8 4 11 11 C 1.47888 * 119.99541 * 180.02562 * 9 8 4 12 12 C 1.39924 * 120.02641 * 359.72573 * 11 9 8 13 13 C 1.38328 * 120.35251 * 179.71566 * 12 11 9 14 14 C 1.37753 * 120.41467 * 0.56202 * 13 12 11 15 15 C 1.40748 * 120.03963 * 359.72090 * 14 13 12 16 16 C 1.41437 * 120.17402 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00335 * 334.92894 * 16 15 14 18 18 C 1.39941 * 119.99775 * 154.92912 * 16 15 14 19 19 N 1.30837 * 119.99839 * 342.58417 * 18 16 15 20 20 Si 1.86797 * 120.00289 * 162.58717 * 18 16 15 21 21 H 1.48495 * 109.47200 * 89.99622 * 20 18 16 22 22 H 1.48498 * 109.47030 * 210.00068 * 20 18 16 23 23 H 1.48508 * 109.46662 * 329.99654 * 20 18 16 24 24 C 1.38998 * 120.02315 * 180.02562 * 11 9 8 25 25 H 1.08997 * 109.47062 * 299.99818 * 1 2 3 26 26 H 1.09003 * 109.46652 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47181 * 60.00222 * 1 2 3 28 28 H 1.08996 * 109.47383 * 299.99659 * 3 2 1 29 29 H 1.08995 * 109.47310 * 59.99896 * 3 2 1 30 30 H 1.08998 * 109.47466 * 64.99664 * 6 4 3 31 31 H 1.08999 * 109.47257 * 185.00116 * 6 4 3 32 32 H 0.96705 * 113.99630 * 180.02562 * 7 6 4 33 33 H 0.96997 * 120.00282 * 25.00375 * 8 4 3 34 34 H 1.07992 * 119.81943 * 359.97438 * 12 11 9 35 35 H 1.08006 * 119.78840 * 180.25965 * 13 12 11 36 36 H 1.08000 * 119.97732 * 179.73922 * 14 13 12 37 37 H 0.96995 * 119.99721 * 180.02562 * 19 18 16 38 38 H 1.07999 * 120.20187 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 6 3.9790 0.3195 -1.1807 7 8 3.3075 -0.9408 -1.1265 8 7 3.9756 0.5646 1.2527 9 6 5.2195 0.7948 1.7178 10 8 5.9758 1.5174 1.0986 11 6 5.6641 0.1683 2.9815 12 6 4.7920 -0.6590 3.6976 13 6 5.2027 -1.2532 4.8773 14 6 6.4706 -1.0284 5.3667 15 6 7.3599 -0.1946 4.6632 16 6 8.6625 0.0377 5.1629 17 1 8.8608 -0.0599 6.2200 18 6 9.6945 0.3941 4.2874 19 7 9.5628 0.1869 3.0023 20 14 11.2599 1.1654 4.9536 21 1 12.2391 0.0971 5.2775 22 1 11.8382 2.0736 3.9309 23 1 10.9466 1.9388 6.1820 24 6 6.9466 0.4057 3.4619 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.6886 1.8464 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 3.7300 0.8240 -2.1143 31 1 5.0560 0.1599 -1.1300 32 1 3.5414 -1.5423 -1.8467 33 1 3.3720 -0.0118 1.7470 34 1 3.7942 -0.8378 3.3251 35 1 4.5234 -1.8934 5.4205 36 1 6.7825 -1.4926 6.2907 37 1 10.2782 0.4335 2.3956 38 1 7.6217 1.0471 2.9147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280125310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:16 Heat of formation + Delta-G solvation = -135.873834 kcal Electronic energy + Delta-G solvation = -21690.218029 eV Core-core repulsion = 18303.563183 eV Total energy + Delta-G solvation = -3386.654846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.07841 -39.31542 -38.56894 -37.36297 -35.69268 -35.34013 -32.51170 -31.31153 -30.73232 -27.75160 -27.17988 -26.17600 -24.60500 -22.83965 -21.86167 -21.17603 -19.57368 -18.41169 -18.07181 -17.41033 -17.02611 -16.91307 -16.46156 -16.27339 -15.98617 -15.61812 -15.14345 -15.04751 -14.83677 -14.40426 -14.26619 -13.86116 -13.45145 -13.36511 -13.00873 -12.89611 -12.77498 -12.53860 -12.28270 -12.18118 -11.92879 -11.90297 -11.50482 -11.06136 -10.96823 -10.66695 -10.43036 -10.10496 -9.46372 -9.38310 -8.65797 -6.37892 0.38421 1.01106 1.36905 1.46911 1.53373 2.09045 2.19678 2.23339 2.79167 2.93926 3.44216 3.70127 3.78920 4.06649 4.15504 4.38956 4.42932 4.44886 4.46898 4.60094 4.63525 4.66452 4.70587 4.84285 4.92531 4.97769 5.09284 5.19172 5.31656 5.49653 5.53679 5.87036 5.93339 6.05285 6.28570 6.37403 6.52434 6.69739 6.88295 6.94785 6.98617 7.31625 8.31272 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.026782 B = 0.004248 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.228607 B = 6589.400363 C = 7235.728544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.064 3.936 4 C 0.139 3.861 5 H 0.104 0.896 6 C 0.072 3.928 7 O -0.554 6.554 8 N -0.699 5.699 9 C 0.561 3.439 10 O -0.589 6.589 11 C -0.139 4.139 12 C -0.198 4.198 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.068 3.932 16 C -0.499 4.499 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.129 4.129 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.049 0.951 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.018 0.982 32 H 0.382 0.618 33 H 0.412 0.588 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.109 0.891 37 H 0.286 0.714 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.896 0.610 -7.075 16.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C -0.014 4.014 4 C 0.035 3.965 5 H 0.122 0.878 6 C -0.007 4.007 7 O -0.359 6.359 8 N -0.351 5.351 9 C 0.351 3.649 10 O -0.471 6.471 11 C -0.142 4.142 12 C -0.218 4.218 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.066 3.934 16 C -0.528 4.528 17 H 0.103 0.897 18 C -0.185 4.185 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.178 1.178 24 C -0.150 4.150 25 H 0.062 0.938 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.036 0.964 32 H 0.230 0.770 33 H 0.249 0.751 34 H 0.147 0.853 35 H 0.155 0.845 36 H 0.128 0.872 37 H 0.097 0.903 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -14.440 1.232 -7.228 16.195 hybrid contribution 0.915 0.035 -0.242 0.947 sum -13.526 1.267 -7.470 15.503 Atomic orbital electron populations 1.22867 0.80588 1.03280 1.00382 1.88156 1.20019 1.26230 1.95347 1.22675 0.90239 0.86262 1.02183 1.21390 0.94703 0.96988 0.83422 0.87794 1.22389 0.94356 0.86278 0.97663 1.86680 1.68601 1.26484 1.54149 1.45703 1.13782 1.50784 1.24861 1.18725 0.81704 0.79557 0.84896 1.90651 1.55056 1.40464 1.60891 1.19800 0.96059 1.02681 0.95706 1.20822 0.99110 1.03857 0.97964 1.20910 0.95583 0.99064 0.95828 1.21412 0.96090 1.03363 1.02817 1.17942 0.93872 0.89903 0.91709 1.19865 0.93606 1.43506 0.95828 0.89746 1.26868 1.04062 0.93146 0.94425 1.69900 1.34856 1.35321 1.05120 0.85183 0.76377 0.78904 0.79148 1.18184 1.19678 1.17822 1.21434 0.94007 1.01129 0.98421 0.93775 0.89267 0.93248 0.89761 0.92106 0.90565 0.96385 0.77029 0.75061 0.85314 0.84491 0.87242 0.90314 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.38 -8.54 8.00 -126.65 -1.01 -9.55 16 3 C 0.06 1.31 5.68 71.98 0.41 1.71 16 4 C 0.14 3.87 2.86 44.99 0.13 4.00 16 5 H 0.10 2.99 7.58 -2.39 -0.02 2.97 16 6 C 0.07 1.92 6.85 71.98 0.49 2.41 16 7 O -0.55 -14.12 11.17 -126.65 -1.41 -15.53 16 8 N -0.70 -24.03 4.96 -445.36 -2.21 -26.24 16 9 C 0.56 25.50 7.74 86.80 0.67 26.17 16 10 O -0.59 -30.65 16.00 -3.86 -0.06 -30.71 16 11 C -0.14 -6.86 5.87 -20.13 -0.12 -6.98 16 12 C -0.20 -8.28 9.55 22.70 0.22 -8.06 16 13 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 14 C -0.22 -10.43 9.78 22.77 0.22 -10.21 16 15 C 0.07 3.78 5.57 -21.32 -0.12 3.66 16 16 C -0.50 -27.59 9.05 23.47 0.21 -27.38 16 17 H 0.08 4.39 7.90 -2.91 -0.02 4.37 16 18 C 0.03 1.58 5.14 85.25 0.44 2.01 16 19 N -0.83 -46.73 10.97 21.83 0.24 -46.49 16 20 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 24 C -0.13 -7.36 8.23 23.01 0.19 -7.17 16 25 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.60 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 31 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.38 6.70 9.12 -74.05 -0.68 6.02 16 33 H 0.41 13.03 6.40 -92.71 -0.59 12.44 16 34 H 0.13 4.37 6.38 -2.91 -0.02 4.35 16 35 H 0.14 4.48 8.06 -2.91 -0.02 4.46 16 36 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 37 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 38 H 0.10 6.27 5.77 -2.91 -0.02 6.25 16 Total: -1.00 -71.89 323.88 1.61 -70.27 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: -0.18 Total: 38.18 kcal Atomic # 6 Polarization: -26.15 SS G_CDS: 4.22 Total: -21.94 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.97 Total: -72.73 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -2.49 Total: -55.80 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -71.89 1.61 -70.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280125310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.600 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds