Wall clock time and date at job start Tue Mar 31 2020 00:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35897 * 117.00288 * 2 1 4 4 C 1.38792 * 120.02181 * 0.02562 * 3 2 1 5 5 C 1.38159 * 120.05460 * 179.97438 * 4 3 2 6 6 C 1.38197 * 120.10483 * 359.74469 * 5 4 3 7 7 C 1.38759 * 120.05434 * 0.50840 * 6 5 4 8 8 O 1.35897 * 120.02233 * 179.77041 * 7 6 5 9 9 C 1.42898 * 117.00481 * 359.71967 * 8 7 6 10 10 C 1.52997 * 109.47319 * 180.02562 * 9 8 7 11 11 C 1.50697 * 109.47466 * 180.02562 * 10 9 8 12 12 O 1.21288 * 120.00038 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.46505 * 120.00115 * 180.02562 * 13 11 10 15 15 C 1.50695 * 109.46848 * 180.02562 * 14 13 11 16 16 H 1.08009 * 120.00556 * 359.97438 * 15 14 13 17 17 C 1.37874 * 120.00094 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99776 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00473 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47163 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47158 * 120.00145 * 19 17 15 22 22 H 1.48504 * 109.47233 * 239.99984 * 19 17 15 23 23 C 1.38611 * 120.02944 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47005 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47243 * 299.99704 * 1 2 3 26 26 H 1.08992 * 109.47022 * 60.00048 * 1 2 3 27 27 H 1.08001 * 119.97914 * 0.02562 * 4 3 2 28 28 H 1.07998 * 119.94783 * 179.97438 * 5 4 3 29 29 H 1.07999 * 119.97366 * 180.25270 * 6 5 4 30 30 H 1.09002 * 109.47259 * 300.00417 * 9 8 7 31 31 H 1.09001 * 109.47074 * 60.00439 * 9 8 7 32 32 H 1.09002 * 109.47153 * 300.00307 * 10 9 8 33 33 H 1.08998 * 109.47533 * 59.99936 * 10 9 8 34 34 H 0.97003 * 119.99640 * 0.02562 * 13 11 10 35 35 H 1.09002 * 109.46801 * 299.99526 * 14 13 11 36 36 H 1.08992 * 109.46823 * 59.99976 * 14 13 11 37 37 H 0.96998 * 120.00187 * 180.02562 * 18 17 15 38 38 H 1.07998 * 120.05552 * 0.04226 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2971 3.6821 0.0064 7 6 4.0567 2.5209 0.0006 8 8 5.4136 2.5960 0.0011 9 6 5.9911 3.9031 0.0016 10 6 7.5166 3.7867 0.0015 11 6 8.1256 5.1651 0.0027 12 8 7.4100 6.1443 0.0039 13 7 9.4656 5.3098 0.0023 14 6 10.0577 6.6499 0.0039 15 6 11.5602 6.5352 0.0025 16 1 12.0276 5.5614 0.0009 17 6 12.3385 7.6732 0.0031 18 7 11.7696 8.8590 0.0056 19 14 14.2011 7.5311 0.0020 20 1 14.5882 6.0974 0.0011 21 1 14.7473 8.1926 -1.2102 22 1 14.7486 8.1903 1.2149 23 6 3.4302 1.2840 -0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 0.2121 2.3187 0.0014 28 1 1.3277 4.5114 0.0011 29 1 3.7847 4.6457 0.0109 30 1 5.6682 4.4433 -0.8884 31 1 5.6676 4.4429 0.8916 32 1 7.8398 3.2463 0.8912 33 1 7.8398 3.2470 -0.8887 34 1 10.0380 4.5267 0.0009 35 1 9.7341 7.1911 -0.8852 36 1 9.7349 7.1885 0.8948 37 1 12.3171 9.6596 0.0056 38 1 4.0197 0.3791 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451467708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:39:54 Heat of formation + Delta-G solvation = -120.566246 kcal Electronic energy + Delta-G solvation = -20179.871669 eV Core-core repulsion = 16793.880609 eV Total energy + Delta-G solvation = -3385.991059 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.130 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.48048 -40.67144 -39.90963 -37.44531 -36.19232 -34.39092 -33.23464 -31.71813 -30.32969 -29.31652 -28.13104 -25.89252 -24.26495 -23.60279 -22.40590 -21.31963 -19.87445 -18.86626 -17.77995 -17.47457 -17.44121 -17.18744 -16.90316 -16.83447 -16.65557 -16.06476 -15.94333 -15.56939 -14.60718 -14.52963 -14.44162 -14.03658 -13.96871 -13.68707 -13.24063 -13.03516 -13.01423 -12.86539 -12.74704 -12.36129 -12.22254 -12.09927 -11.73620 -11.61360 -11.46330 -10.88801 -10.82483 -9.86487 -9.55025 -9.14804 -8.29995 -6.46277 0.34602 0.38670 1.43671 1.44436 1.57840 1.67818 1.68998 2.32032 2.45454 2.72270 2.89859 3.05237 3.63443 3.81379 3.93658 4.04915 4.07525 4.13468 4.18181 4.37786 4.43013 4.44889 4.53349 4.70396 4.72452 4.76490 4.91980 5.10979 5.21261 5.23605 5.25989 5.44538 5.47092 5.50916 5.66464 5.83935 6.27044 6.42537 6.64819 6.84626 7.22487 7.43466 8.82330 Molecular weight = 279.13amu Principal moments of inertia in cm(-1) A = 0.065508 B = 0.002283 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.324527 B =12260.503894 C =12656.777342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.156 3.844 4 C -0.243 4.243 5 C -0.041 4.041 6 C -0.257 4.257 7 C 0.154 3.846 8 O -0.318 6.318 9 C 0.082 3.918 10 C -0.124 4.124 11 C 0.502 3.498 12 O -0.602 6.602 13 N -0.704 5.704 14 C 0.264 3.736 15 C -0.556 4.556 16 H 0.085 0.915 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C -0.206 4.206 24 H 0.120 0.880 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.156 0.844 28 H 0.153 0.847 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.411 0.589 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.269 0.731 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.449 -18.168 -0.019 27.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.110 3.890 4 C -0.262 4.262 5 C -0.059 4.059 6 C -0.276 4.276 7 C 0.109 3.891 8 O -0.232 6.232 9 C 0.007 3.993 10 C -0.163 4.163 11 C 0.290 3.710 12 O -0.485 6.485 13 N -0.354 5.354 14 C 0.141 3.859 15 C -0.594 4.594 16 H 0.103 0.897 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.808 3.192 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.205 1.205 23 C -0.225 4.225 24 H 0.138 0.862 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.174 0.826 28 H 0.171 0.829 29 H 0.148 0.852 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.247 0.753 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.077 0.923 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.667 -17.646 -0.016 27.175 hybrid contribution 0.900 0.679 -0.001 1.127 sum -19.767 -16.967 -0.017 26.050 Atomic orbital electron populations 1.23403 0.75934 1.05764 1.02567 1.86039 1.23849 1.26443 1.88279 1.18682 0.91189 0.85110 0.93972 1.21440 1.01415 0.91457 1.11874 1.21061 0.93234 0.98459 0.93171 1.21447 0.95941 0.97688 1.12514 1.18731 0.82236 0.93801 0.94367 1.85920 1.17598 1.31298 1.88359 1.22358 0.92643 0.81733 1.02613 1.21382 0.93358 0.93405 1.08191 1.21002 0.82621 0.91690 0.75702 1.90660 1.61819 1.43135 1.52883 1.46170 1.06226 1.10626 1.72370 1.18585 0.93060 0.79905 0.94323 1.21669 0.90671 0.94307 1.52738 0.89698 1.26068 1.05236 0.94488 0.93907 1.70139 1.38116 0.98629 1.50047 0.85105 0.77267 0.79171 0.77634 1.17631 1.20504 1.20520 1.19534 0.92315 0.96578 1.14106 0.86184 0.91413 0.91419 0.82612 0.82942 0.85196 0.91618 0.91610 0.85435 0.85426 0.75270 0.99216 0.99209 0.92252 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.27 16 2 O -0.33 -6.14 10.49 -92.39 -0.97 -7.11 16 3 C 0.16 3.27 6.68 22.49 0.15 3.42 16 4 C -0.24 -4.22 9.04 22.38 0.20 -4.02 16 5 C -0.04 -0.78 10.04 22.24 0.22 -0.55 16 6 C -0.26 -6.08 9.04 22.38 0.20 -5.88 16 7 C 0.15 3.97 6.68 22.49 0.15 4.12 16 8 O -0.32 -8.42 10.13 -92.39 -0.94 -9.35 16 9 C 0.08 2.21 4.03 71.98 0.29 2.50 16 10 C -0.12 -3.18 6.07 29.85 0.18 -3.00 16 11 C 0.50 19.19 7.83 87.66 0.69 19.88 16 12 O -0.60 -28.63 15.98 -3.05 -0.05 -28.68 16 13 N -0.70 -28.81 5.55 -466.79 -2.59 -31.40 16 14 C 0.26 14.28 5.43 85.63 0.46 14.74 16 15 C -0.56 -29.91 9.28 25.60 0.24 -29.67 16 16 H 0.09 4.12 7.60 -2.91 -0.02 4.09 16 17 C 0.00 0.14 5.46 84.65 0.46 0.60 16 18 N -0.93 -55.78 13.29 21.45 0.28 -55.50 16 19 Si 0.98 42.05 29.54 68.60 2.03 44.07 16 20 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 22 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 23 C -0.21 -4.95 9.93 22.46 0.22 -4.72 16 24 H 0.12 0.56 8.14 -2.38 -0.02 0.54 16 25 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 26 H 0.07 0.46 7.66 -2.39 -0.02 0.44 16 27 H 0.16 1.71 6.29 -2.91 -0.02 1.70 16 28 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 29 H 0.13 3.12 6.29 -2.91 -0.02 3.10 16 30 H 0.07 1.86 7.63 -2.39 -0.02 1.84 16 31 H 0.07 1.86 7.60 -2.39 -0.02 1.84 16 32 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 35 H -0.01 -0.62 8.14 -2.39 -0.02 -0.63 16 36 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 37 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -72.98 329.80 2.65 -70.33 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.30 Total: 18.94 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.59 Total: -1.31 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -2.30 Total: -86.90 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.95 Total: -45.14 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.07 kcal Total: -72.98 2.65 -70.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451467708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.240 kcal (2) G-P(sol) polarization free energy of solvation -72.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds