Wall clock time and date at job start Tue Mar 31 2020 01:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35244 * 126.69963 * 2 1 4 4 C 1.42023 * 103.96104 * 179.97438 * 3 2 1 5 5 N 1.39495 * 126.89670 * 179.97438 * 4 3 2 6 6 C 1.34783 * 119.99790 * 359.97438 * 5 4 3 7 7 O 1.21267 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.50705 * 119.99620 * 180.02562 * 6 5 4 9 9 C 1.53076 * 109.45288 * 59.79271 * 8 6 5 10 10 C 1.53183 * 109.29478 * 181.24073 * 9 8 6 11 11 N 1.46930 * 108.89468 * 305.57480 * 10 9 8 12 12 C 1.36937 * 120.63259 * 233.51494 * 11 10 9 13 13 H 1.08000 * 119.99761 * 151.83401 * 12 11 10 14 14 C 1.38806 * 120.00219 * 331.83653 * 12 11 10 15 15 N 1.31624 * 120.00191 * 343.07619 * 14 12 11 16 16 Si 1.86800 * 120.00146 * 163.07294 * 14 12 11 17 17 H 1.48506 * 109.46812 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47258 * 119.99807 * 16 14 12 19 19 H 1.48499 * 109.47344 * 240.00342 * 16 14 12 20 20 C 1.46925 * 118.73328 * 53.53726 * 11 10 9 21 21 C 1.53033 * 109.45653 * 179.97438 * 8 6 5 22 22 N 1.30720 * 106.20828 * 0.23611 * 4 3 2 23 23 O 1.20918 * 111.47928 * 359.57426 * 22 4 3 24 24 H 1.09002 * 109.46786 * 90.00421 * 1 2 3 25 25 H 1.08994 * 109.47373 * 210.00345 * 1 2 3 26 26 H 1.08997 * 109.46937 * 330.00775 * 1 2 3 27 27 H 1.08002 * 128.02059 * 359.94537 * 3 2 1 28 28 H 0.96998 * 120.00123 * 179.97438 * 5 4 3 29 29 H 1.08990 * 109.46232 * 299.97761 * 8 6 5 30 30 H 1.09005 * 109.39190 * 61.35979 * 9 8 6 31 31 H 1.09004 * 109.62337 * 301.25772 * 9 8 6 32 32 H 1.09005 * 109.58619 * 185.72200 * 10 9 8 33 33 H 1.08998 * 109.58733 * 65.43770 * 10 9 8 34 34 H 0.96995 * 120.00379 * 180.02562 * 15 14 12 35 35 H 1.09001 * 109.58688 * 66.18006 * 20 11 10 36 36 H 1.08996 * 109.58570 * 186.45714 * 20 11 10 37 37 H 1.09003 * 109.49897 * 58.66581 * 21 8 6 38 38 H 1.09004 * 109.50093 * 298.57050 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3153 1.0844 0.0000 4 6 3.6251 0.5354 0.0006 5 7 4.8287 1.2406 0.0004 6 6 4.8201 2.5884 -0.0011 7 8 3.7660 3.1879 -0.0017 8 6 6.1205 3.3501 -0.0019 9 6 6.9274 2.9799 -1.2490 10 6 8.2614 3.7325 -1.2305 11 7 7.9947 5.1701 -1.0859 12 6 8.5199 6.0700 -1.9745 13 1 8.0069 7.0006 -2.1675 14 6 9.7117 5.7862 -2.6272 15 7 10.5036 4.8398 -2.1694 16 14 10.1916 6.7474 -4.1553 17 1 9.1386 7.7491 -4.4609 18 1 11.4818 7.4432 -3.9176 19 1 10.3359 5.8148 -5.3018 20 6 7.1542 5.6238 0.0305 21 6 5.8309 4.8528 -0.0042 22 7 3.4765 -0.7633 -0.0043 23 8 2.3082 -1.0753 0.0007 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5137 27 1 2.0307 2.1262 -0.0008 28 1 5.6718 0.7609 0.0012 29 1 6.6934 3.0916 0.8885 30 1 6.3647 3.2585 -2.1400 31 1 7.1154 1.9062 -1.2579 32 1 8.7957 3.5521 -2.1633 33 1 8.8646 3.3865 -0.3911 34 1 11.3365 4.6417 -2.6252 35 1 7.6649 5.4315 0.9741 36 1 6.9601 6.6917 -0.0688 37 1 5.2372 5.1103 0.8730 38 1 5.2797 5.1158 -0.9071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042571261.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:23:34 Heat of formation + Delta-G solvation = 43.607218 kcal Electronic energy + Delta-G solvation = -21681.574109 eV Core-core repulsion = 18334.994897 eV Total energy + Delta-G solvation = -3346.579213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.92105 -40.26317 -37.21825 -35.56700 -33.78476 -33.29032 -32.03033 -30.55017 -29.80497 -27.96664 -26.03941 -24.00500 -22.90297 -22.25142 -21.22626 -20.51769 -19.18245 -17.74698 -17.41341 -17.08264 -16.67209 -16.53732 -15.01281 -14.91856 -14.37764 -13.80772 -13.74409 -13.69282 -13.60461 -13.50232 -13.10028 -12.62750 -12.59650 -12.51234 -11.66954 -11.50577 -11.31980 -11.24123 -10.98981 -10.76287 -10.51791 -10.30105 -10.07352 -9.88019 -9.69775 -9.51266 -9.46701 -8.85650 -8.52497 -6.73693 -5.84269 -3.26640 1.31847 1.96780 2.56645 2.88764 3.05733 3.34917 3.43312 3.45607 4.19349 4.46257 4.67811 4.78652 5.01507 5.07320 5.13004 5.16833 5.29899 5.35157 5.39794 5.48136 5.61465 5.69033 5.89131 6.00064 6.17756 6.34951 6.37658 6.43181 6.47740 6.54299 6.72608 6.93856 7.11105 7.23270 7.54422 7.76393 8.00444 8.24624 8.39908 9.16060 9.79044 10.35178 11.24668 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036122 B = 0.003489 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.973599 B = 8022.730433 C = 8201.534848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.031 4.031 3 C -0.226 4.226 4 C 0.253 3.747 5 N -0.636 5.636 6 C 0.529 3.471 7 O -0.517 6.517 8 C -0.091 4.091 9 C -0.134 4.134 10 C 0.172 3.828 11 N -0.593 5.593 12 C -0.252 4.252 13 H 0.067 0.933 14 C 0.002 3.998 15 N -0.904 5.904 16 Si 0.902 3.098 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.145 3.855 21 C -0.112 4.112 22 N -0.396 5.396 23 O 0.092 5.908 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.190 0.810 28 H 0.420 0.580 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.022 0.978 34 H 0.254 0.746 35 H 0.020 0.980 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.856 -9.248 5.384 19.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.249 4.249 4 C 0.004 3.996 5 N -0.288 5.288 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.112 4.112 9 C -0.174 4.174 10 C 0.046 3.954 11 N -0.315 5.315 12 C -0.382 4.382 13 H 0.085 0.915 14 C -0.196 4.196 15 N -0.548 5.548 16 Si 0.732 3.268 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.018 3.982 21 C -0.151 4.151 22 N -0.113 5.113 23 O 0.033 5.967 24 H 0.106 0.894 25 H 0.101 0.899 26 H 0.110 0.890 27 H 0.207 0.793 28 H 0.257 0.743 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.064 0.936 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.611 -9.811 5.307 19.187 hybrid contribution 0.554 0.807 -0.781 1.252 sum -15.058 -9.004 4.527 18.119 Atomic orbital electron populations 1.20318 0.83874 1.04567 1.04118 1.24430 0.96437 0.85978 1.02577 1.22746 0.89398 1.02100 1.10679 1.20657 0.88960 0.88756 1.01272 1.42879 1.05850 1.06957 1.73081 1.21597 0.93072 0.80057 0.73482 1.90587 1.33303 1.67948 1.47168 1.21347 0.91187 0.96777 1.01889 1.22313 1.00353 0.99415 0.95297 1.20773 0.89998 0.82489 1.02124 1.44077 1.57319 1.02100 1.28041 1.19241 1.01816 1.00709 1.16397 0.91525 1.25052 0.95196 0.98994 1.00406 1.70022 1.11282 1.34168 1.39340 0.86225 0.78070 0.79363 0.83144 1.20200 1.21698 1.21545 1.20945 0.89383 0.96860 0.91000 1.21896 0.99641 0.91547 1.02052 1.74032 0.97466 1.13315 1.26536 1.84780 1.10490 1.32331 1.69143 0.89398 0.89878 0.88978 0.79340 0.74285 0.88498 0.91865 0.92866 0.88988 0.95968 0.93633 0.96253 0.92232 0.92218 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.45 36.01 0.38 -0.05 16 2 C -0.03 -0.33 7.48 -35.37 -0.26 -0.59 16 3 C -0.23 -3.03 9.79 -39.20 -0.38 -3.41 16 4 C 0.25 3.71 8.18 -154.83 -1.27 2.44 16 5 N -0.64 -8.84 5.31 -11.43 -0.06 -8.90 16 6 C 0.53 8.22 7.12 -10.98 -0.08 8.14 16 7 O -0.52 -9.04 13.26 5.57 0.07 -8.96 16 8 C -0.09 -1.44 2.48 -91.71 -0.23 -1.67 16 9 C -0.13 -2.35 5.27 -26.60 -0.14 -2.49 16 10 C 0.17 3.85 5.30 -3.71 -0.02 3.83 16 11 N -0.59 -14.32 2.99 -172.32 -0.52 -14.84 16 12 C -0.25 -6.77 9.58 -15.06 -0.14 -6.91 16 13 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 14 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 15 N -0.90 -25.53 11.20 55.49 0.62 -24.91 16 16 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16 21 C -0.11 -1.95 4.65 -26.62 -0.12 -2.07 16 22 N -0.40 -5.76 12.10 31.19 0.38 -5.39 16 23 O 0.09 1.17 11.19 17.04 0.19 1.36 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.19 2.61 6.22 -52.49 -0.33 2.29 16 28 H 0.42 4.96 8.22 -40.82 -0.34 4.62 16 29 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.79 7.53 -51.93 -0.39 0.39 16 32 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 37 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 38 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 LS Contribution 314.03 15.07 4.73 4.73 Total: -1.00 -31.19 314.03 -7.12 -38.31 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.13 Total: 2.18 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.38 Total: 0.07 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.42 Total: -54.04 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.26 Total: -7.60 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.19 -7.12 -38.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042571261.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.918 kcal (2) G-P(sol) polarization free energy of solvation -31.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds