Wall clock time and date at job start Tue Mar 31 2020 02:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32172 * 119.13936 * 2 1 4 4 C 1.32368 * 120.60309 * 180.26124 * 3 2 1 5 5 C 1.47499 * 120.50892 * 179.76725 * 4 3 2 6 6 O 1.21597 * 120.00011 * 179.97438 * 5 4 3 7 7 N 1.34784 * 119.99898 * 359.72640 * 5 4 3 8 8 C 1.46499 * 119.99971 * 179.97438 * 7 5 4 9 9 C 1.52992 * 109.47267 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.47277 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.46913 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00408 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99553 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00389 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99821 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47207 * 90.00219 * 15 13 11 17 17 H 1.48501 * 109.47218 * 209.99776 * 15 13 11 18 18 H 1.48495 * 109.47413 * 330.00022 * 15 13 11 19 19 C 1.46674 * 118.97921 * 359.49909 * 4 3 2 20 20 O 1.21862 * 120.78002 * 180.23133 * 19 4 3 21 21 N 1.35150 * 118.43575 * 0.24465 * 19 4 3 22 22 H 0.96992 * 120.36739 * 180.02562 * 21 19 4 23 23 C 1.34903 * 119.25906 * 0.02562 * 21 19 4 24 24 C 1.50703 * 119.49712 * 179.97438 * 23 21 19 25 25 H 1.08995 * 109.47144 * 270.24603 * 1 2 3 26 26 H 1.08997 * 109.47106 * 30.24998 * 1 2 3 27 27 H 1.08996 * 109.46973 * 150.24945 * 1 2 3 28 28 H 0.96999 * 120.00044 * 359.97438 * 7 5 4 29 29 H 1.09004 * 109.47024 * 300.00310 * 8 7 5 30 30 H 1.09005 * 109.47136 * 59.99926 * 8 7 5 31 31 H 1.09004 * 109.47330 * 300.00096 * 9 8 7 32 32 H 1.09005 * 109.47124 * 59.99892 * 9 8 7 33 33 H 1.08997 * 109.46785 * 299.99511 * 10 9 8 34 34 H 1.08992 * 109.47085 * 59.99748 * 10 9 8 35 35 H 0.97005 * 120.00528 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.46935 * 0.02562 * 24 23 21 37 37 H 1.08996 * 109.47119 * 120.00139 * 24 23 21 38 38 H 1.08995 * 109.47138 * 240.00320 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1506 1.1544 0.0000 4 6 3.4738 1.1883 -0.0052 5 6 4.1899 2.4777 -0.0103 6 8 5.4057 2.4980 -0.0146 7 7 3.4966 3.6336 -0.0154 8 6 4.2078 4.9143 -0.0199 9 6 3.1944 6.0605 -0.0245 10 6 3.9372 7.3981 -0.0298 11 6 2.9389 8.5270 -0.0337 12 1 1.8806 8.3120 -0.0328 13 6 3.3768 9.8344 -0.0383 14 7 4.6655 10.0963 -0.0399 15 14 2.1394 11.2337 -0.0438 16 1 1.8110 11.6097 1.3549 17 1 2.7200 12.4052 -0.7479 18 1 0.9034 10.7989 -0.7426 19 6 4.2170 -0.0762 0.0003 20 8 5.4356 -0.0834 -0.0001 21 7 3.5185 -1.2332 0.0053 22 1 3.9815 -2.0855 0.0094 23 6 2.1702 -1.1894 0.0047 24 6 1.3860 -2.4763 0.0098 25 1 -0.3633 0.0044 1.0276 26 1 -0.3633 0.8877 -0.5177 27 1 -0.3633 -0.8922 -0.5099 28 1 2.5268 3.6174 -0.0160 29 1 4.8329 4.9860 0.8702 30 1 4.8341 4.9790 -0.9098 31 1 2.5690 5.9890 -0.9144 32 1 2.5685 5.9956 0.8656 33 1 4.5627 7.4698 0.8599 34 1 4.5627 7.4627 -0.9200 35 1 4.9736 11.0161 -0.0427 36 1 2.0745 -3.3213 0.0140 37 1 0.7579 -2.5155 0.8997 38 1 0.7585 -2.5229 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179213494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:02:09 Heat of formation + Delta-G solvation = -49.006003 kcal Electronic energy + Delta-G solvation = -20781.612313 eV Core-core repulsion = 17431.017089 eV Total energy + Delta-G solvation = -3350.595223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03506 -39.17854 -38.17599 -35.77259 -35.25647 -33.54871 -33.12767 -31.13360 -29.60703 -27.45991 -26.33900 -24.99659 -23.78220 -22.51719 -20.72823 -20.31905 -18.95852 -18.54073 -16.94937 -16.55422 -16.37568 -16.01028 -15.28278 -15.12958 -14.48363 -14.40845 -14.39305 -13.82865 -13.80604 -13.65501 -13.40244 -13.25286 -12.44483 -12.22749 -12.16074 -11.79447 -11.77180 -11.50060 -11.48612 -10.85703 -10.66602 -10.55308 -10.23487 -9.78562 -9.65178 -9.29048 -9.05661 -8.70188 -8.31991 -8.28632 -5.96579 -3.99388 -0.16442 1.36030 2.06642 2.62142 3.25079 3.34626 3.40792 3.43924 3.57759 3.59239 3.89254 3.97893 4.24910 4.48973 4.65444 4.79524 4.85979 5.04776 5.16313 5.25704 5.39125 5.48998 5.69559 5.82545 5.87303 5.96539 6.03694 6.25763 6.57423 6.69032 6.92580 7.07829 7.17694 7.46478 7.70201 7.83444 7.83731 8.02846 8.42876 8.47531 9.07479 9.64452 11.14781 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.029555 B = 0.002963 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.150750 B = 9446.078349 C =10356.875283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.030 4.030 3 N -0.352 5.352 4 C 0.015 3.985 5 C 0.573 3.427 6 O -0.511 6.511 7 N -0.706 5.706 8 C 0.116 3.884 9 C -0.120 4.120 10 C 0.023 3.977 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.495 3.505 20 O -0.481 6.481 21 N -0.587 5.587 22 H 0.420 0.580 23 C 0.150 3.850 24 C -0.127 4.127 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.406 0.594 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.019 0.981 34 H 0.020 0.980 35 H 0.261 0.739 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.276 -28.737 0.097 30.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.156 4.156 3 N -0.069 5.069 4 C -0.154 4.154 5 C 0.355 3.645 6 O -0.385 6.385 7 N -0.358 5.358 8 C -0.006 4.006 9 C -0.158 4.158 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.287 3.713 20 O -0.352 6.352 21 N -0.223 5.223 22 H 0.261 0.739 23 C 0.035 3.965 24 C -0.184 4.184 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.242 0.758 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.016 -27.750 0.090 29.503 hybrid contribution -0.481 -0.374 0.026 0.610 sum -10.497 -28.124 0.117 30.020 Atomic orbital electron populations 1.20541 0.86849 1.03806 1.03151 1.20137 0.97946 0.85568 1.11929 1.67534 1.08448 1.29581 1.01369 1.24059 0.88803 0.94119 1.08432 1.17081 0.86624 0.82220 0.78545 1.90894 1.12359 1.86523 1.48691 1.45992 1.10951 1.05436 1.73385 1.21722 0.95916 0.80697 1.02254 1.21890 0.97611 0.95285 1.01038 1.19036 0.95614 0.89070 0.97708 1.21215 0.93025 0.90939 1.50742 0.92605 1.25032 0.95146 0.98977 0.95357 1.69968 1.13151 1.19539 1.50685 0.86585 0.81415 0.81873 0.78054 1.20694 1.21256 1.19885 1.19113 0.88466 0.83967 0.79782 1.91071 1.11405 1.85228 1.47509 1.43782 1.06344 1.11985 1.60151 0.73933 1.21536 0.83532 0.98965 0.92502 1.21201 1.00488 0.91383 1.05357 0.90656 0.89990 0.90772 0.75840 0.91490 0.91474 0.92612 0.92611 0.96228 0.96211 0.92962 0.90351 0.88108 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 9.65 36.01 0.35 -0.05 16 2 C -0.03 -0.24 6.70 -83.18 -0.56 -0.80 16 3 N -0.35 -4.15 9.57 -4.85 -0.05 -4.19 16 4 C 0.01 0.22 6.96 -80.46 -0.56 -0.34 16 5 C 0.57 10.30 7.80 -12.48 -0.10 10.20 16 6 O -0.51 -11.25 15.51 -15.20 -0.24 -11.48 16 7 N -0.71 -11.74 5.55 -61.36 -0.34 -12.08 16 8 C 0.12 2.20 5.67 -4.05 -0.02 2.18 16 9 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 12 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.77 29.54 -169.99 -5.02 16.74 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 C 0.50 6.85 7.93 -12.69 -0.10 6.75 16 20 O -0.48 -8.67 16.40 -15.43 -0.25 -8.93 16 21 N -0.59 -4.67 5.29 -9.45 -0.05 -4.72 16 22 H 0.42 2.06 8.64 -40.82 -0.35 1.70 16 23 C 0.15 0.88 6.78 -81.98 -0.56 0.32 16 24 C -0.13 -0.13 8.83 36.01 0.32 0.19 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.14 6.43 -51.93 -0.33 -0.19 16 28 H 0.41 5.86 7.84 -40.82 -0.32 5.54 16 29 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 -0.03 7.90 -51.93 -0.41 -0.44 16 37 H 0.10 -0.01 8.09 -51.93 -0.42 -0.43 16 38 H 0.10 -0.02 7.37 -51.93 -0.38 -0.40 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -37.80 329.03 -7.31 -45.12 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.14 Total: -1.65 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -1.92 Total: 2.76 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.30 Total: -47.53 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.49 Total: -20.41 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.80 -7.31 -45.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179213494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.889 kcal (2) G-P(sol) polarization free energy of solvation -37.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds