Wall clock time and date at job start Tue Mar 31 2020 01:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30012 * 127.33563 * 2 1 4 4 O 1.20659 * 112.29856 * 180.27719 * 3 2 1 5 5 C 1.33486 * 113.16004 * 359.73335 * 4 3 2 6 6 C 1.50703 * 126.83069 * 180.02562 * 5 4 3 7 7 C 1.37364 * 106.34063 * 0.02562 * 5 4 3 8 8 C 1.47400 * 128.56422 * 179.97438 * 7 5 4 9 9 O 1.21603 * 120.00152 * 90.00040 * 8 7 5 10 10 N 1.34773 * 119.99819 * 269.99406 * 8 7 5 11 11 C 1.46964 * 120.59591 * 180.02562 * 10 8 7 12 12 C 1.53376 * 108.63583 * 235.25120 * 11 10 8 13 13 N 1.46965 * 108.63149 * 310.57460 * 12 11 10 14 14 C 1.36940 * 120.59103 * 235.20343 * 13 12 11 15 15 H 1.07997 * 120.00120 * 28.28832 * 14 13 12 16 16 C 1.38816 * 119.99751 * 208.57211 * 14 13 12 17 17 N 1.31617 * 120.00015 * 17.29706 * 16 14 13 18 18 Si 1.86802 * 119.99711 * 197.30287 * 16 14 13 19 19 H 1.48492 * 109.47179 * 59.99670 * 18 16 14 20 20 H 1.48501 * 109.46901 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46787 * 299.99373 * 18 16 14 22 22 C 1.46958 * 118.81538 * 55.47854 * 13 12 11 23 23 C 1.46974 * 120.59366 * 0.02806 * 10 8 7 24 24 H 1.08998 * 109.46946 * 270.14655 * 1 2 3 25 25 H 1.08997 * 109.46985 * 30.14303 * 1 2 3 26 26 H 1.08999 * 109.47322 * 150.14136 * 1 2 3 27 27 H 1.08996 * 109.46988 * 269.99720 * 6 5 4 28 28 H 1.08991 * 109.47206 * 30.00192 * 6 5 4 29 29 H 1.09000 * 109.47034 * 150.00055 * 6 5 4 30 30 H 1.08996 * 109.61436 * 115.50537 * 11 10 8 31 31 H 1.09002 * 109.61001 * 354.99052 * 11 10 8 32 32 H 1.08997 * 109.60958 * 190.82603 * 12 11 10 33 33 H 1.09002 * 109.60973 * 70.32057 * 12 11 10 34 34 H 0.97004 * 119.99916 * 179.97438 * 17 16 14 35 35 H 1.09005 * 109.60843 * 64.26174 * 22 13 12 36 36 H 1.09000 * 109.61354 * 184.77332 * 22 13 12 37 37 H 1.09000 * 109.60363 * 244.49135 * 23 10 8 38 38 H 1.08995 * 109.60505 * 4.82953 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0054 5 6 3.6494 -0.6008 -0.0043 6 6 4.9712 -1.3247 -0.0093 7 6 2.3991 -1.1696 0.0023 8 6 2.0401 -2.5992 0.0056 9 8 1.8970 -3.1878 1.0600 10 7 1.8702 -3.2540 -1.1601 11 6 1.5116 -4.6791 -1.1721 12 6 2.5482 -5.4383 -2.0096 13 7 2.7188 -4.7400 -3.2914 14 6 2.5471 -5.4056 -4.4758 15 1 1.8775 -6.2513 -4.5279 16 6 3.2383 -4.9968 -5.6081 17 7 4.2912 -4.2159 -5.4903 18 14 2.6740 -5.5551 -7.2991 19 1 1.2855 -5.0858 -7.5375 20 1 3.5733 -4.9849 -8.3342 21 1 2.7145 -7.0378 -7.3699 22 6 3.0829 -3.3163 -3.2795 23 6 2.0403 -2.5556 -2.4420 24 1 -0.3633 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5160 26 1 -0.3634 -0.8912 -0.5116 27 1 5.2851 -1.5007 -1.0381 28 1 5.7197 -0.7179 0.5002 29 1 4.8648 -2.2790 0.5064 30 1 0.5227 -4.8039 -1.6132 31 1 1.5114 -5.0650 -0.1527 32 1 2.1990 -6.4549 -2.1903 33 1 3.4995 -5.4649 -1.4780 34 1 4.7744 -3.9305 -6.2815 35 1 4.0713 -3.1952 -2.8362 36 1 3.0868 -2.9311 -4.2991 37 1 1.0889 -2.5294 -2.9733 38 1 2.3863 -1.5380 -2.2610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265738429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:20 Heat of formation + Delta-G solvation = 52.990033 kcal Electronic energy + Delta-G solvation = -22650.141516 eV Core-core repulsion = 19303.969173 eV Total energy + Delta-G solvation = -3346.172343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.80342 -39.58870 -36.85453 -34.57147 -33.91532 -33.48437 -31.39152 -30.24455 -28.81047 -28.12665 -26.96135 -24.63342 -23.35986 -22.72765 -20.83193 -20.09587 -18.82976 -17.87257 -17.51341 -16.61502 -15.95337 -15.67208 -14.90085 -14.77285 -14.04410 -13.79140 -13.72223 -13.52217 -13.38462 -13.29540 -13.14175 -13.09794 -12.73136 -12.49699 -12.30402 -11.77188 -11.39778 -11.06707 -10.88607 -10.83245 -10.60219 -10.32588 -10.12689 -10.01463 -9.87744 -9.71509 -9.20088 -8.66978 -8.37137 -6.79627 -5.92578 -3.36996 1.38793 1.95923 2.62874 2.90385 3.31048 3.37414 3.37612 3.42810 4.11309 4.29133 4.39017 4.78186 4.98723 5.20324 5.22278 5.27768 5.39264 5.40761 5.45196 5.53954 5.67102 5.70310 5.77217 5.85766 5.92754 5.98683 6.05206 6.12177 6.25668 6.34146 6.68919 6.82158 7.10051 7.36097 7.65365 7.74802 8.25977 8.28764 8.36811 9.04939 9.67320 10.23894 11.15311 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.005231 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.840487 B = 5351.480035 C = 5639.665174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.052 3.948 3 N -0.360 5.360 4 O 0.093 5.907 5 C 0.018 3.982 6 C -0.079 4.079 7 C -0.239 4.239 8 C 0.593 3.407 9 O -0.546 6.546 10 N -0.583 5.583 11 C 0.095 3.905 12 C 0.132 3.868 13 N -0.590 5.590 14 C -0.258 4.258 15 H 0.068 0.932 16 C 0.005 3.995 17 N -0.902 5.902 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.161 3.839 23 C 0.082 3.918 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.024 0.976 34 H 0.256 0.744 35 H 0.024 0.976 36 H 0.101 0.899 37 H 0.065 0.935 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.893 6.666 8.579 11.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.110 4.110 3 N -0.067 5.067 4 O 0.032 5.968 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.246 4.246 8 C 0.378 3.622 9 O -0.425 6.425 10 N -0.314 5.314 11 C -0.029 4.029 12 C 0.004 3.996 13 N -0.313 5.313 14 C -0.387 4.387 15 H 0.086 0.914 16 C -0.194 4.194 17 N -0.546 5.546 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.034 3.966 23 C -0.042 4.042 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.034 7.693 8.956 12.190 hybrid contribution -0.293 -0.948 -1.010 1.416 sum -3.327 6.745 7.946 10.941 Atomic orbital electron populations 1.20186 0.85364 1.04036 1.03652 1.24698 0.98476 0.86659 1.01204 1.73571 0.89215 1.23408 1.20497 1.84497 1.21403 1.22714 1.68204 1.24618 0.97546 0.83490 0.98869 1.20489 0.88777 0.99180 1.05199 1.21896 0.92785 0.95498 1.14464 1.16946 0.77444 0.83874 0.83890 1.90760 1.52582 1.68100 1.31039 1.48027 1.66441 1.11192 1.05716 1.22309 0.99500 0.79594 1.01478 1.21310 0.95316 0.95234 0.87691 1.44001 1.81533 1.05190 1.00596 1.19167 1.19713 1.13638 0.86194 0.91426 1.25069 0.95234 1.00141 0.98957 1.69990 1.17265 1.38747 1.28625 0.86338 0.78071 0.78451 0.83724 1.20938 1.21564 1.20768 1.21262 0.92039 0.83742 0.99582 1.22774 1.02025 0.95660 0.83754 0.89818 0.90018 0.89904 0.88147 0.89307 0.88806 0.91563 0.89768 0.91297 0.95759 0.93368 0.95792 0.88103 0.91621 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.49 36.01 0.38 -0.49 16 2 C 0.05 0.76 7.59 -79.77 -0.61 0.16 16 3 N -0.36 -5.47 12.01 34.78 0.42 -5.05 16 4 O 0.09 1.35 11.06 18.67 0.21 1.55 16 5 C 0.02 0.26 7.47 -34.62 -0.26 0.00 16 6 C -0.08 -0.89 10.33 36.01 0.37 -0.52 16 7 C -0.24 -3.80 4.21 -102.89 -0.43 -4.23 16 8 C 0.59 10.53 7.49 -12.53 -0.09 10.44 16 9 O -0.55 -11.04 16.51 5.28 0.09 -10.95 16 10 N -0.58 -10.34 2.95 -173.46 -0.51 -10.85 16 11 C 0.09 1.66 6.59 -3.59 -0.02 1.64 16 12 C 0.13 2.61 6.67 -3.59 -0.02 2.59 16 13 N -0.59 -13.79 2.96 -171.74 -0.51 -14.30 16 14 C -0.26 -6.63 9.57 -15.06 -0.14 -6.77 16 15 H 0.07 1.71 7.89 -52.49 -0.41 1.29 16 16 C 0.00 0.13 4.91 -17.43 -0.09 0.04 16 17 N -0.90 -24.62 11.19 55.49 0.62 -23.99 16 18 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 C 0.16 3.50 5.54 -3.35 -0.02 3.48 16 23 C 0.08 1.47 6.52 -3.34 -0.02 1.45 16 24 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.12 8.11 -51.93 -0.42 0.70 16 30 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.08 1.43 6.99 -51.93 -0.36 1.07 16 32 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 2.46 5.99 -51.93 -0.31 2.15 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 1.11 6.25 -51.93 -0.32 0.79 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -30.22 319.72 -6.04 -36.26 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.19 Total: -0.87 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.96 Total: 7.79 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.02 Total: -54.19 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.29 Total: -9.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.22 -6.04 -36.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265738429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.250 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds