Wall clock time and date at job start Tue Mar 31 2020 01:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30012 * 127.33563 * 2 1 4 4 O 1.20659 * 112.29856 * 180.27719 * 3 2 1 5 5 C 1.33486 * 113.16004 * 359.73335 * 4 3 2 6 6 C 1.50703 * 126.83069 * 180.02562 * 5 4 3 7 7 C 1.37364 * 106.34063 * 0.02562 * 5 4 3 8 8 C 1.47400 * 128.56422 * 179.97438 * 7 5 4 9 9 O 1.21603 * 120.00152 * 90.00040 * 8 7 5 10 10 N 1.34773 * 119.99819 * 269.99406 * 8 7 5 11 11 C 1.46964 * 120.59591 * 180.02562 * 10 8 7 12 12 C 1.53376 * 108.63583 * 235.25120 * 11 10 8 13 13 N 1.46965 * 108.63149 * 310.57460 * 12 11 10 14 14 C 1.36940 * 120.59103 * 235.20343 * 13 12 11 15 15 H 1.07997 * 120.00120 * 28.28832 * 14 13 12 16 16 C 1.38816 * 119.99751 * 208.57211 * 14 13 12 17 17 N 1.31617 * 120.00015 * 17.29706 * 16 14 13 18 18 Si 1.86802 * 119.99711 * 197.30287 * 16 14 13 19 19 H 1.48492 * 109.47179 * 59.99670 * 18 16 14 20 20 H 1.48501 * 109.46901 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46787 * 299.99373 * 18 16 14 22 22 C 1.46958 * 118.81538 * 55.47854 * 13 12 11 23 23 C 1.46974 * 120.59366 * 0.02806 * 10 8 7 24 24 H 1.08998 * 109.46946 * 270.14655 * 1 2 3 25 25 H 1.08997 * 109.46985 * 30.14303 * 1 2 3 26 26 H 1.08999 * 109.47322 * 150.14136 * 1 2 3 27 27 H 1.08996 * 109.46988 * 269.99720 * 6 5 4 28 28 H 1.08991 * 109.47206 * 30.00192 * 6 5 4 29 29 H 1.09000 * 109.47034 * 150.00055 * 6 5 4 30 30 H 1.08996 * 109.61436 * 115.50537 * 11 10 8 31 31 H 1.09002 * 109.61001 * 354.99052 * 11 10 8 32 32 H 1.08997 * 109.60958 * 190.82603 * 12 11 10 33 33 H 1.09002 * 109.60973 * 70.32057 * 12 11 10 34 34 H 0.97004 * 119.99916 * 179.97438 * 17 16 14 35 35 H 1.09005 * 109.60843 * 64.26174 * 22 13 12 36 36 H 1.09000 * 109.61354 * 184.77332 * 22 13 12 37 37 H 1.09000 * 109.60363 * 244.49135 * 23 10 8 38 38 H 1.08995 * 109.60505 * 4.82953 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0054 5 6 3.6494 -0.6008 -0.0043 6 6 4.9712 -1.3247 -0.0093 7 6 2.3991 -1.1696 0.0023 8 6 2.0401 -2.5992 0.0056 9 8 1.8970 -3.1878 1.0600 10 7 1.8702 -3.2540 -1.1601 11 6 1.5116 -4.6791 -1.1721 12 6 2.5482 -5.4383 -2.0096 13 7 2.7188 -4.7400 -3.2914 14 6 2.5471 -5.4056 -4.4758 15 1 1.8775 -6.2513 -4.5279 16 6 3.2383 -4.9968 -5.6081 17 7 4.2912 -4.2159 -5.4903 18 14 2.6740 -5.5551 -7.2991 19 1 1.2855 -5.0858 -7.5375 20 1 3.5733 -4.9849 -8.3342 21 1 2.7145 -7.0378 -7.3699 22 6 3.0829 -3.3163 -3.2795 23 6 2.0403 -2.5556 -2.4420 24 1 -0.3633 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5160 26 1 -0.3634 -0.8912 -0.5116 27 1 5.2851 -1.5007 -1.0381 28 1 5.7197 -0.7179 0.5002 29 1 4.8648 -2.2790 0.5064 30 1 0.5227 -4.8039 -1.6132 31 1 1.5114 -5.0650 -0.1527 32 1 2.1990 -6.4549 -2.1903 33 1 3.4995 -5.4649 -1.4780 34 1 4.7744 -3.9305 -6.2815 35 1 4.0713 -3.1952 -2.8362 36 1 3.0868 -2.9311 -4.2991 37 1 1.0889 -2.5294 -2.9733 38 1 2.3863 -1.5380 -2.2610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265738429.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:19 Heat of formation + Delta-G solvation = 35.175293 kcal Electronic energy + Delta-G solvation = -22650.914021 eV Core-core repulsion = 19303.969173 eV Total energy + Delta-G solvation = -3346.944848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -45.93887 -41.05185 -38.47827 -35.80458 -35.48991 -34.61696 -33.14909 -31.88345 -29.81528 -29.34837 -28.47853 -26.12791 -24.95987 -24.26699 -22.29657 -21.31312 -20.28822 -19.22321 -18.79589 -18.11270 -17.51701 -17.01929 -16.63479 -16.23854 -15.49877 -15.32326 -15.23699 -15.04868 -14.76681 -14.41891 -14.32512 -14.04690 -13.87616 -13.59227 -13.43174 -13.37293 -13.21471 -12.64588 -12.53493 -12.27760 -12.16492 -12.03374 -11.93396 -11.71160 -11.29995 -10.92915 -10.59202 -10.37598 -9.94199 -8.66704 -7.88601 -5.35747 0.24987 0.81963 1.24965 1.50710 1.52605 1.58685 1.71269 2.10689 2.52147 3.01605 3.21613 3.27196 3.52554 3.57867 3.89094 4.17282 4.19610 4.20663 4.34760 4.44947 4.51760 4.54047 4.55141 4.59227 4.64476 4.71005 4.74580 4.80140 5.01325 5.04647 5.08222 5.21686 5.46701 5.57716 5.65613 6.29127 6.36223 6.94773 7.11469 7.13721 7.78970 8.32037 9.16708 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022469 B = 0.005231 C = 0.004964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.840487 B = 5351.480035 C = 5639.665174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.054 3.946 3 N -0.373 5.373 4 O 0.092 5.908 5 C 0.031 3.969 6 C -0.079 4.079 7 C -0.271 4.271 8 C 0.602 3.398 9 O -0.571 6.571 10 N -0.584 5.584 11 C 0.104 3.896 12 C 0.132 3.868 13 N -0.607 5.607 14 C -0.266 4.266 15 H 0.070 0.930 16 C -0.043 4.043 17 N -0.931 5.931 18 Si 0.965 3.035 19 H -0.278 1.278 20 H -0.296 1.296 21 H -0.278 1.278 22 C 0.168 3.832 23 C 0.102 3.898 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 7.037 8.895 11.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 N -0.082 5.082 4 O 0.033 5.967 5 C -0.032 4.032 6 C -0.136 4.136 7 C -0.279 4.279 8 C 0.389 3.611 9 O -0.452 6.452 10 N -0.314 5.314 11 C -0.019 4.019 12 C 0.006 3.994 13 N -0.330 5.330 14 C -0.395 4.395 15 H 0.088 0.912 16 C -0.239 4.239 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.203 1.203 22 C 0.042 3.958 23 C -0.022 4.022 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.139 0.861 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.025 0.975 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.873 8.063 9.289 12.896 hybrid contribution 0.006 -1.086 -1.048 1.509 sum -3.867 6.977 8.241 11.470 Atomic orbital electron populations 1.20337 0.83375 1.04896 1.04737 1.25157 0.99757 0.85919 1.00034 1.73566 0.89451 1.23712 1.21487 1.84492 1.21318 1.22699 1.68189 1.25064 0.98078 0.83380 0.96725 1.20624 0.88294 0.99109 1.05585 1.21839 0.94035 0.94822 1.17174 1.17056 0.76387 0.84439 0.83205 1.90742 1.53655 1.68970 1.31803 1.48034 1.66439 1.11289 1.05687 1.22187 0.99035 0.79296 1.01413 1.21386 0.95633 0.95898 0.86504 1.44241 1.81647 1.05948 1.01184 1.19475 1.19234 1.13582 0.87244 0.91183 1.25740 0.95443 1.00755 1.01941 1.70127 1.18371 1.40163 1.28977 0.85386 0.77495 0.78019 0.79784 1.20388 1.22201 1.20335 1.21056 0.92496 0.83671 0.98604 1.22461 1.00893 0.95613 0.83240 0.88554 0.88317 0.89839 0.87989 0.86149 0.89478 0.90463 0.88940 0.90484 0.96688 0.93898 0.97455 0.90794 0.91071 0.90070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 10.49 71.24 0.75 -0.85 16 2 C 0.05 1.49 7.59 45.16 0.34 1.83 16 3 N -0.37 -10.75 12.01 -44.79 -0.54 -11.29 16 4 O 0.09 2.52 11.06 77.04 0.85 3.37 16 5 C 0.03 0.83 7.47 25.48 0.19 1.02 16 6 C -0.08 -1.66 10.33 71.24 0.74 -0.92 16 7 C -0.27 -8.25 4.21 -18.74 -0.08 -8.33 16 8 C 0.60 20.63 7.49 86.66 0.65 21.28 16 9 O -0.57 -22.45 16.51 -4.04 -0.07 -22.51 16 10 N -0.58 -19.96 2.95 -820.97 -2.42 -22.38 16 11 C 0.10 3.50 6.59 86.42 0.57 4.07 16 12 C 0.13 5.15 6.67 86.42 0.58 5.72 16 13 N -0.61 -28.19 2.96 -697.27 -2.06 -30.25 16 14 C -0.27 -13.56 9.57 84.03 0.80 -12.76 16 15 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 16 C -0.04 -2.23 4.91 84.86 0.42 -1.81 16 17 N -0.93 -51.41 11.19 21.65 0.24 -51.16 16 18 Si 0.96 42.29 29.59 68.60 2.03 44.32 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.30 -13.14 7.11 99.48 0.71 -12.44 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 C 0.17 7.36 5.54 86.58 0.48 7.84 16 23 C 0.10 3.55 6.52 86.58 0.56 4.12 16 24 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 26 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.12 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.98 8.11 -2.39 -0.02 1.96 16 30 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 31 H 0.09 3.00 6.99 -2.39 -0.02 2.98 16 32 H 0.08 2.84 7.93 -2.39 -0.02 2.82 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 35 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.07 3.66 5.99 -2.39 -0.01 3.65 16 37 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.08 2.61 6.25 -2.39 -0.01 2.59 16 Total: -1.00 -63.45 319.72 5.10 -58.35 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: 1.07 Total: 10.33 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.00 Total: 21.22 kcal Atomic # 7 Polarization: -110.30 SS G_CDS: -4.78 Total: -115.08 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.79 Total: -19.14 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -63.45 5.10 -58.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265738429.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.526 kcal (2) G-P(sol) polarization free energy of solvation -63.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds