Wall clock time and date at job start Tue Mar 31 2020 00:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35241 * 126.07015 * 2 1 4 4 C 1.40404 * 107.86862 * 180.02562 * 3 2 1 5 5 N 1.40160 * 125.97784 * 179.97438 * 4 3 2 6 6 C 1.34779 * 119.99342 * 0.02562 * 5 4 3 7 7 O 1.21292 * 120.00255 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99989 * 179.97438 * 6 5 4 9 9 H 1.09004 * 110.32925 * 302.75230 * 8 6 5 10 10 C 1.54478 * 110.37139 * 64.99736 * 8 6 5 11 11 C 1.54510 * 104.06500 * 142.81210 * 10 8 6 12 12 C 1.54477 * 104.18108 * 359.93120 * 11 10 8 13 13 O 1.44415 * 110.37723 * 180.37967 * 8 6 5 14 14 N 1.31218 * 108.05333 * 0.22972 * 4 3 2 15 15 N 1.34972 * 126.07131 * 180.02562 * 2 1 3 16 16 C 1.46503 * 125.97378 * 0.02562 * 15 2 1 17 17 C 1.50702 * 109.47349 * 89.99427 * 16 15 2 18 18 H 1.07997 * 119.99549 * 0.02562 * 17 16 15 19 19 C 1.37873 * 119.99862 * 179.97438 * 17 16 15 20 20 N 1.31515 * 120.00247 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99847 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47211 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47008 * 120.00207 * 21 19 17 24 24 H 1.48503 * 109.47413 * 240.00167 * 21 19 17 25 25 H 1.09003 * 109.46851 * 89.97916 * 1 2 3 26 26 H 1.08999 * 109.47209 * 209.97508 * 1 2 3 27 27 H 1.08996 * 109.46977 * 329.98014 * 1 2 3 28 28 H 1.07997 * 126.06650 * 0.02562 * 3 2 1 29 29 H 0.96993 * 120.00792 * 179.97438 * 5 4 3 30 30 H 1.09000 * 110.51268 * 24.16636 * 10 8 6 31 31 H 1.09007 * 110.63128 * 261.51455 * 10 8 6 32 32 H 1.09002 * 110.51305 * 118.64650 * 11 10 8 33 33 H 1.08994 * 110.51141 * 241.21979 * 11 10 8 34 34 H 1.09006 * 110.37498 * 94.92285 * 12 11 10 35 35 H 1.09000 * 110.37254 * 217.25804 * 12 11 10 36 36 H 1.08993 * 109.46935 * 209.99913 * 16 15 2 37 37 H 1.08997 * 109.47049 * 329.99732 * 16 15 2 38 38 H 0.97000 * 120.00088 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7735 1.4749 -0.0013 6 6 4.6367 2.8157 -0.0009 7 8 3.5301 3.3124 -0.0005 8 6 5.8586 3.6978 -0.0011 9 1 6.4896 3.4709 0.8583 10 6 6.6524 3.5166 -1.3138 11 6 7.1695 4.9359 -1.6389 12 6 6.6268 5.8096 -0.4863 13 8 5.4739 5.0897 0.0083 14 7 3.6336 -0.6576 -0.0059 15 7 2.3017 -1.0910 -0.0005 16 6 1.8501 -2.4846 -0.0016 17 6 1.6956 -2.9615 -1.4228 18 1 1.9125 -2.2934 -2.2431 19 6 1.2783 -4.2510 -1.6758 20 7 1.0146 -5.0647 -0.6768 21 14 1.0875 -4.8423 -3.4374 22 1 1.4442 -3.7431 -4.3699 23 1 1.9871 -6.0005 -3.6709 24 1 -0.3201 -5.2537 -3.6718 25 1 -0.3633 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5141 28 1 1.9720 2.1211 0.0004 29 1 5.6584 1.0777 -0.0013 30 1 5.9991 3.1568 -2.1087 31 1 7.4867 2.8306 -1.1667 32 1 8.2593 4.9521 -1.6500 33 1 6.7737 5.2768 -2.5955 34 1 7.3761 5.9102 0.2989 35 1 6.3332 6.7907 -0.8597 36 1 2.5845 -3.1049 0.5120 37 1 0.8913 -2.5563 0.5118 38 1 0.7206 -5.9718 -0.8548 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271121160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:49 Heat of formation + Delta-G solvation = -26.266515 kcal Electronic energy + Delta-G solvation = -21339.509377 eV Core-core repulsion = 17989.900212 eV Total energy + Delta-G solvation = -3349.609165 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38039 -41.19685 -39.43976 -36.39028 -35.35164 -33.40603 -32.85288 -32.66609 -30.72299 -28.53539 -27.90995 -25.59467 -24.56862 -22.66653 -22.33626 -21.30748 -20.74158 -18.82431 -18.40168 -17.86414 -17.44068 -17.15470 -16.47542 -16.40447 -16.09254 -15.90844 -15.44408 -14.83510 -14.67713 -14.43928 -14.30641 -13.83756 -13.74283 -13.53335 -13.15924 -12.93706 -12.74100 -12.71520 -12.67841 -12.28147 -12.25947 -12.10390 -11.69823 -11.56225 -11.38046 -11.03428 -10.74728 -10.67911 -9.62638 -9.18828 -8.33732 -6.51201 0.84347 1.19872 1.33475 1.37006 1.39361 1.51809 2.13087 2.15239 2.35583 2.96231 3.02084 3.33181 3.62004 3.84200 3.90933 4.07089 4.13404 4.23194 4.34810 4.41325 4.68185 4.69632 4.73912 4.83119 4.87559 4.94656 4.95730 4.98037 5.01908 5.11246 5.15191 5.21632 5.53198 5.72182 5.79922 5.88207 6.22903 6.23795 6.60811 6.92564 7.05793 7.19877 8.72704 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.003553 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.188930 B = 7878.796790 C = 8345.679425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.089 3.911 3 C -0.303 4.303 4 C 0.272 3.728 5 N -0.616 5.616 6 C 0.520 3.480 7 O -0.540 6.540 8 C 0.071 3.929 9 H 0.134 0.866 10 C -0.147 4.147 11 C -0.147 4.147 12 C 0.035 3.965 13 O -0.384 6.384 14 N -0.352 5.352 15 N -0.341 5.341 16 C 0.274 3.726 17 C -0.553 4.553 18 H 0.049 0.951 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.267 1.267 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.162 0.838 29 H 0.428 0.572 30 H 0.063 0.937 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.026 0.974 37 H 0.053 0.947 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.102 17.683 -0.018 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.042 4.042 3 C -0.334 4.334 4 C 0.018 3.982 5 N -0.268 5.268 6 C 0.307 3.693 7 O -0.414 6.414 8 C 0.010 3.990 9 H 0.152 0.848 10 C -0.185 4.185 11 C -0.185 4.185 12 C -0.041 4.041 13 O -0.303 6.303 14 N -0.183 5.183 15 N -0.123 5.123 16 C 0.156 3.844 17 C -0.591 4.591 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.199 1.199 24 H -0.192 1.192 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.179 0.821 29 H 0.266 0.734 30 H 0.081 0.919 31 H 0.140 0.860 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.071 0.929 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.751 16.825 0.105 20.523 hybrid contribution -0.163 -0.324 -0.739 0.823 sum 11.588 16.501 -0.633 20.174 Atomic orbital electron populations 1.20477 0.85290 1.04262 1.04004 1.21734 0.96696 0.86430 0.99318 1.21415 0.90237 0.99808 1.21893 1.19291 0.88693 0.89264 1.00964 1.42418 1.07146 1.04632 1.72565 1.21183 0.91912 0.81238 0.75013 1.90645 1.28568 1.74271 1.47869 1.22917 0.90873 0.82836 1.02390 0.84830 1.23041 1.00575 1.00219 0.94660 1.22951 1.03276 0.92881 0.99392 1.23823 0.87496 0.96608 0.96177 1.89278 1.38282 1.15912 1.86849 1.77172 1.00012 1.09680 1.31419 1.48810 1.01751 1.07535 1.54246 1.19278 0.95016 0.72278 0.97868 1.21458 1.47550 0.98379 0.91724 0.93278 1.25729 0.93915 0.95901 1.02252 1.70006 1.45089 1.07546 1.32959 0.85295 0.78484 0.78086 0.78516 1.19896 1.19882 1.19224 0.89749 0.91067 0.87685 0.82071 0.73388 0.91850 0.85996 0.87115 0.90690 0.89534 0.87910 0.95566 0.92941 0.91704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.83 10.11 71.24 0.72 -2.11 16 2 C 0.09 3.84 6.92 41.38 0.29 4.13 16 3 C -0.30 -12.87 9.52 22.11 0.21 -12.66 16 4 C 0.27 11.24 8.11 133.32 1.08 12.32 16 5 N -0.62 -18.66 5.43 -307.51 -1.67 -20.33 16 6 C 0.52 15.41 7.05 87.66 0.62 16.03 16 7 O -0.54 -20.96 13.68 15.31 0.21 -20.76 16 8 C 0.07 1.37 3.71 30.35 0.11 1.48 16 9 H 0.13 1.66 8.14 -2.38 -0.02 1.64 16 10 C -0.15 -1.99 6.61 31.61 0.21 -1.78 16 11 C -0.15 -1.50 7.08 31.61 0.22 -1.27 16 12 C 0.03 0.45 7.65 72.48 0.55 1.00 16 13 O -0.38 -9.07 10.91 -130.61 -1.43 -10.49 16 14 N -0.35 -16.60 12.59 -54.45 -0.69 -17.29 16 15 N -0.34 -16.70 3.59 -338.45 -1.22 -17.91 16 16 C 0.27 14.57 5.99 85.63 0.51 15.08 16 17 C -0.55 -31.08 9.39 25.60 0.24 -30.84 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.02 1.26 5.46 84.65 0.46 1.72 16 20 N -0.92 -51.72 13.29 21.45 0.28 -51.44 16 21 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 26 H 0.07 2.47 7.07 -2.39 -0.02 2.45 16 27 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 28 H 0.16 6.78 5.91 -2.91 -0.02 6.77 16 29 H 0.43 9.62 8.82 -92.71 -0.82 8.80 16 30 H 0.06 1.14 7.86 -2.39 -0.02 1.12 16 31 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.05 2.76 7.04 -2.39 -0.02 2.74 16 38 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -75.05 324.07 3.02 -72.03 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 0.26 Total: 18.05 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: 5.23 Total: 3.09 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.29 Total: -106.97 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -1.22 Total: -31.25 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -75.05 3.02 -72.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271121160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.763 kcal (2) G-P(sol) polarization free energy of solvation -75.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds