Wall clock time and date at job start Tue Mar 31 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35232 * 126.06953 * 2 1 4 4 C 1.40411 * 107.87160 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97429 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99942 * 359.97438 * 5 4 3 7 7 O 1.21287 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99682 * 180.02562 * 6 5 4 9 9 H 1.09007 * 110.45415 * 57.40180 * 8 6 5 10 10 C 1.54510 * 110.50906 * 180.02562 * 8 6 5 11 11 C 1.54477 * 104.18108 * 118.57849 * 10 8 6 12 12 O 1.44642 * 104.69773 * 336.19290 * 11 10 8 13 13 C 1.44415 * 105.37338 * 40.34325 * 12 11 10 14 14 N 1.31217 * 108.04772 * 0.25705 * 4 3 2 15 15 N 1.34963 * 126.07065 * 179.97438 * 2 1 3 16 16 C 1.46504 * 125.97657 * 0.02710 * 15 2 1 17 17 C 1.50704 * 109.47005 * 89.99880 * 16 15 2 18 18 H 1.08001 * 120.00034 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00106 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99553 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47236 * 89.99929 * 21 19 17 23 23 H 1.48503 * 109.46795 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.47304 * 329.99582 * 21 19 17 25 25 H 1.08999 * 109.46968 * 90.03264 * 1 2 3 26 26 H 1.09006 * 109.47633 * 210.02702 * 1 2 3 27 27 H 1.09003 * 109.47721 * 330.02874 * 1 2 3 28 28 H 1.08008 * 126.06772 * 359.97216 * 3 2 1 29 29 H 0.96999 * 119.99715 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.51305 * 237.29380 * 10 8 6 31 31 H 1.08994 * 110.51141 * 359.86709 * 10 8 6 32 32 H 1.09006 * 110.37498 * 94.92285 * 11 10 8 33 33 H 1.09000 * 110.37254 * 217.25804 * 11 10 8 34 34 H 1.08998 * 110.37627 * 200.73568 * 13 12 11 35 35 H 1.09003 * 110.37369 * 78.39849 * 13 12 11 36 36 H 1.08998 * 109.47237 * 209.99520 * 16 15 2 37 37 H 1.08998 * 109.46922 * 330.00037 * 16 15 2 38 38 H 0.97007 * 119.99714 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6365 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0011 9 1 6.4897 3.4745 -0.8591 10 6 5.4503 5.1881 0.0012 11 6 6.0413 5.7422 1.3166 12 8 6.1758 4.5854 2.1744 13 6 6.6504 3.5254 1.3162 14 7 3.6336 -0.6576 -0.0047 15 7 2.3016 -1.0909 0.0005 16 6 1.8500 -2.4846 0.0006 17 6 1.6957 -2.9627 -1.4203 18 1 1.9120 -2.2950 -2.2412 19 6 1.2775 -4.2521 -1.6722 20 7 1.0127 -5.0646 -0.6725 21 14 1.0855 -4.8445 -3.4334 22 1 2.3664 -5.4334 -3.8999 23 1 0.0160 -5.8728 -3.4959 24 1 0.7215 -3.6981 -4.3043 25 1 -0.3633 -0.0006 -1.0277 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3634 0.8902 0.5134 28 1 1.9719 2.1211 -0.0004 29 1 5.6583 1.0777 0.0021 30 1 5.8815 5.7023 -0.8577 31 1 4.3649 5.2868 -0.0012 32 1 7.0164 6.1938 1.1339 33 1 5.3623 6.4701 1.7606 34 1 6.4393 2.5532 1.7615 35 1 7.7193 3.6355 1.1326 36 1 2.5845 -3.1045 0.5147 37 1 0.8912 -2.5558 0.5140 38 1 0.7188 -5.9719 -0.8498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271126781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:01 Heat of formation + Delta-G solvation = -5.741331 kcal Electronic energy + Delta-G solvation = -21421.639702 eV Core-core repulsion = 18072.920576 eV Total energy + Delta-G solvation = -3348.719126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94556 -40.08884 -38.36314 -34.91781 -33.42961 -32.52773 -31.44819 -30.84543 -29.49071 -26.71387 -26.35453 -24.25768 -23.12765 -22.41314 -20.67679 -19.82545 -19.12607 -17.27045 -16.71652 -16.69515 -16.30468 -15.89133 -15.42939 -15.06562 -14.88792 -14.30837 -14.08875 -13.96508 -13.09968 -12.99394 -12.49518 -12.32941 -12.26154 -12.17813 -11.75094 -11.70870 -11.62671 -11.41206 -11.21371 -11.08867 -10.84726 -10.46462 -10.27316 -10.21752 -9.90410 -9.54979 -9.52767 -8.65601 -7.96056 -7.48008 -6.26830 -4.34474 2.26194 2.71489 2.87914 3.20631 3.26836 3.31516 3.59418 3.76086 3.80875 4.11567 4.28933 4.48295 4.59655 4.81468 4.88134 5.06849 5.07864 5.22871 5.33933 5.42593 5.47109 5.54281 5.69137 5.89048 5.93012 6.10276 6.23339 6.42782 6.44422 6.53087 6.70112 6.91774 7.04066 7.42107 7.61634 7.65907 7.87449 8.03321 8.20723 8.62951 8.73477 9.31848 10.80500 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.003456 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.950495 B = 8099.414942 C = 8267.415957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.262 3.738 5 N -0.630 5.630 6 C 0.528 3.472 7 O -0.510 6.510 8 C -0.142 4.142 9 H 0.115 0.885 10 C -0.147 4.147 11 C 0.045 3.955 12 O -0.370 6.370 13 C 0.055 3.945 14 N -0.320 5.320 15 N -0.316 5.316 16 C 0.258 3.742 17 C -0.536 4.536 18 H 0.064 0.936 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.907 3.093 22 H -0.278 1.278 23 H -0.283 1.283 24 H -0.272 1.272 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.159 0.841 29 H 0.410 0.590 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 17.539 1.921 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.321 4.321 4 C 0.009 3.991 5 N -0.277 5.277 6 C 0.313 3.687 7 O -0.383 6.383 8 C -0.164 4.164 9 H 0.133 0.867 10 C -0.185 4.185 11 C -0.031 4.031 12 O -0.289 6.289 13 C -0.023 4.023 14 N -0.151 5.151 15 N -0.098 5.098 16 C 0.141 3.859 17 C -0.575 4.575 18 H 0.082 0.918 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.734 3.266 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.197 1.197 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.176 0.824 29 H 0.245 0.755 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.669 16.532 2.204 18.797 hybrid contribution 0.079 -0.128 -1.284 1.293 sum 8.748 16.404 0.920 18.614 Atomic orbital electron populations 1.20337 0.87846 1.02860 1.03186 1.21066 0.94938 0.87155 1.00815 1.21231 0.89731 0.99778 1.21368 1.18991 0.87227 0.89612 1.03228 1.42442 1.07551 1.05051 1.72696 1.20250 0.91077 0.81402 0.75961 1.90621 1.26635 1.73570 1.47455 1.22705 0.95905 0.96362 1.01409 0.86675 1.23015 1.04918 0.92011 0.98514 1.23503 1.00196 0.89437 0.89991 1.89208 1.87178 1.20244 1.32222 1.23427 0.97444 0.93068 0.88347 1.77251 0.99983 1.08468 1.29360 1.48996 1.00955 1.07803 1.52089 1.19698 0.96000 0.71287 0.98957 1.21318 1.46820 0.97969 0.91358 0.91774 1.24929 0.94648 0.96076 0.98138 1.69922 1.44900 1.07110 1.31023 0.86348 0.78015 0.78576 0.83706 1.20340 1.20857 1.19667 0.90406 0.90822 0.90801 0.82392 0.75516 0.89841 0.87895 0.92114 0.88717 0.88520 0.90795 0.92994 0.92751 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.08 16 2 C 0.09 1.95 6.92 -82.29 -0.57 1.38 16 3 C -0.29 -6.02 9.52 -39.83 -0.38 -6.40 16 4 C 0.26 5.33 8.11 -154.39 -1.25 4.08 16 5 N -0.63 -9.59 5.26 -11.13 -0.06 -9.65 16 6 C 0.53 7.46 7.04 -10.98 -0.08 7.39 16 7 O -0.51 -8.91 12.41 5.55 0.07 -8.84 16 8 C -0.14 -1.32 3.51 -90.20 -0.32 -1.63 16 9 H 0.12 0.75 8.14 -51.92 -0.42 0.33 16 10 C -0.15 -1.28 6.67 -25.16 -0.17 -1.45 16 11 C 0.05 0.38 7.65 37.93 0.29 0.67 16 12 O -0.37 -4.22 11.65 -35.23 -0.41 -4.63 16 13 C 0.05 0.48 7.17 37.93 0.27 0.75 16 14 N -0.32 -7.39 12.59 31.44 0.40 -7.00 16 15 N -0.32 -7.53 3.59 -58.33 -0.21 -7.74 16 16 C 0.26 6.64 5.99 -5.19 -0.03 6.61 16 17 C -0.54 -14.78 9.39 -34.44 -0.32 -15.11 16 18 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 19 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 20 N -0.89 -25.04 13.29 55.43 0.74 -24.30 16 21 Si 0.91 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.07 1.27 7.07 -51.93 -0.37 0.91 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.16 3.19 5.92 -52.48 -0.31 2.88 16 29 H 0.41 4.89 8.82 -40.82 -0.36 4.53 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.10 1.14 6.50 -51.93 -0.34 0.81 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.88 7.71 -51.93 -0.40 0.48 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.05 1.38 7.04 -51.93 -0.37 1.02 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 321.51 15.07 4.85 4.85 Total: -1.00 -33.29 321.51 -7.01 -40.30 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -5.07 Total: 4.09 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.29 Total: -3.11 kcal Atomic # 7 Polarization: -49.56 SS G_CDS: 0.86 Total: -48.69 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: -0.34 Total: -13.47 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.29 -7.01 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271126781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.561 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds