Wall clock time and date at job start Tue Mar 31 2020 01:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35232 * 126.06953 * 2 1 4 4 C 1.40411 * 107.87160 * 179.97438 * 3 2 1 5 5 N 1.40155 * 125.97429 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99942 * 359.97438 * 5 4 3 7 7 O 1.21287 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99682 * 180.02562 * 6 5 4 9 9 H 1.09007 * 110.45415 * 57.40180 * 8 6 5 10 10 C 1.54510 * 110.50906 * 180.02562 * 8 6 5 11 11 C 1.54477 * 104.18108 * 118.57849 * 10 8 6 12 12 O 1.44642 * 104.69773 * 336.19290 * 11 10 8 13 13 C 1.44415 * 105.37338 * 40.34325 * 12 11 10 14 14 N 1.31217 * 108.04772 * 0.25705 * 4 3 2 15 15 N 1.34963 * 126.07065 * 179.97438 * 2 1 3 16 16 C 1.46504 * 125.97657 * 0.02710 * 15 2 1 17 17 C 1.50704 * 109.47005 * 89.99880 * 16 15 2 18 18 H 1.08001 * 120.00034 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00106 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99553 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00001 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47236 * 89.99929 * 21 19 17 23 23 H 1.48503 * 109.46795 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.47304 * 329.99582 * 21 19 17 25 25 H 1.08999 * 109.46968 * 90.03264 * 1 2 3 26 26 H 1.09006 * 109.47633 * 210.02702 * 1 2 3 27 27 H 1.09003 * 109.47721 * 330.02874 * 1 2 3 28 28 H 1.08008 * 126.06772 * 359.97216 * 3 2 1 29 29 H 0.96999 * 119.99715 * 179.97438 * 5 4 3 30 30 H 1.09002 * 110.51305 * 237.29380 * 10 8 6 31 31 H 1.08994 * 110.51141 * 359.86709 * 10 8 6 32 32 H 1.09006 * 110.37498 * 94.92285 * 11 10 8 33 33 H 1.09000 * 110.37254 * 217.25804 * 11 10 8 34 34 H 1.08998 * 110.37627 * 200.73568 * 13 12 11 35 35 H 1.09003 * 110.37369 * 78.39849 * 13 12 11 36 36 H 1.08998 * 109.47237 * 209.99520 * 16 15 2 37 37 H 1.08998 * 109.46922 * 330.00037 * 16 15 2 38 38 H 0.97007 * 119.99714 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6546 0.0006 5 7 4.7734 1.4750 0.0013 6 6 4.6365 2.8158 0.0009 7 8 3.5300 3.3125 0.0005 8 6 5.8585 3.6979 0.0011 9 1 6.4897 3.4745 -0.8591 10 6 5.4503 5.1881 0.0012 11 6 6.0413 5.7422 1.3166 12 8 6.1758 4.5854 2.1744 13 6 6.6504 3.5254 1.3162 14 7 3.6336 -0.6576 -0.0047 15 7 2.3016 -1.0909 0.0005 16 6 1.8500 -2.4846 0.0006 17 6 1.6957 -2.9627 -1.4203 18 1 1.9120 -2.2950 -2.2412 19 6 1.2775 -4.2521 -1.6722 20 7 1.0127 -5.0646 -0.6725 21 14 1.0855 -4.8445 -3.4334 22 1 2.3664 -5.4334 -3.8999 23 1 0.0160 -5.8728 -3.4959 24 1 0.7215 -3.6981 -4.3043 25 1 -0.3633 -0.0006 -1.0277 26 1 -0.3634 -0.8898 0.5143 27 1 -0.3634 0.8902 0.5134 28 1 1.9719 2.1211 -0.0004 29 1 5.6583 1.0777 0.0021 30 1 5.8815 5.7023 -0.8577 31 1 4.3649 5.2868 -0.0012 32 1 7.0164 6.1938 1.1339 33 1 5.3623 6.4701 1.7606 34 1 6.4393 2.5532 1.7615 35 1 7.7193 3.6355 1.1326 36 1 2.5845 -3.1045 0.5147 37 1 0.8912 -2.5558 0.5140 38 1 0.7188 -5.9719 -0.8498 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271126781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:01 Heat of formation + Delta-G solvation = -28.779074 kcal Electronic energy + Delta-G solvation = -21422.638694 eV Core-core repulsion = 18072.920576 eV Total energy + Delta-G solvation = -3349.718118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38868 -41.26583 -39.35353 -36.39444 -35.33714 -33.53416 -32.89139 -32.57850 -30.25849 -28.57151 -27.90678 -25.53220 -24.52448 -23.47710 -21.83908 -21.30881 -20.50112 -18.82634 -18.27948 -17.79899 -17.42556 -17.14714 -16.75079 -16.38522 -16.11825 -15.88799 -15.44794 -15.14408 -14.73515 -14.33459 -13.84550 -13.75021 -13.67703 -13.53021 -13.15174 -12.95949 -12.86555 -12.68832 -12.42635 -12.37355 -12.25317 -12.09029 -11.88443 -11.58206 -11.37488 -11.08589 -10.74829 -10.57535 -9.61839 -9.17418 -8.34002 -6.51812 0.87482 1.30368 1.36930 1.38077 1.39712 1.50742 2.15755 2.25889 2.38166 2.95910 3.02512 3.33160 3.58624 3.83123 3.92968 4.13560 4.18175 4.30938 4.41619 4.43141 4.64626 4.69069 4.69733 4.78455 4.86900 4.87116 4.93321 4.96023 4.97782 5.10044 5.20701 5.27142 5.52418 5.79392 5.81974 5.91003 6.23228 6.24692 6.60143 6.94805 7.08922 7.19222 8.72191 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.003456 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.950495 B = 8099.414942 C = 8267.415957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.301 4.301 4 C 0.270 3.730 5 N -0.623 5.623 6 C 0.524 3.476 7 O -0.545 6.545 8 C -0.132 4.132 9 H 0.154 0.846 10 C -0.146 4.146 11 C 0.043 3.957 12 O -0.405 6.405 13 C 0.053 3.947 14 N -0.356 5.356 15 N -0.342 5.342 16 C 0.275 3.725 17 C -0.554 4.554 18 H 0.049 0.951 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.269 1.269 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.165 0.835 29 H 0.425 0.575 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 18.911 0.739 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.332 4.332 4 C 0.016 3.984 5 N -0.273 5.273 6 C 0.312 3.688 7 O -0.420 6.420 8 C -0.153 4.153 9 H 0.172 0.828 10 C -0.184 4.184 11 C -0.033 4.033 12 O -0.324 6.324 13 C -0.024 4.024 14 N -0.187 5.187 15 N -0.124 5.124 16 C 0.156 3.844 17 C -0.592 4.592 18 H 0.068 0.932 19 C -0.178 4.178 20 N -0.556 5.556 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.194 1.194 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.182 0.818 29 H 0.263 0.737 30 H 0.132 0.868 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.105 0.895 35 H 0.129 0.871 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.862 17.927 1.032 20.486 hybrid contribution -0.248 -0.429 -0.861 0.993 sum 9.613 17.498 0.171 19.965 Atomic orbital electron populations 1.20472 0.85342 1.04216 1.03975 1.21745 0.96685 0.86495 0.99416 1.21420 0.90101 0.99831 1.21816 1.19375 0.88939 0.89280 1.00763 1.42641 1.06894 1.05175 1.72545 1.21320 0.92390 0.80975 0.74132 1.90599 1.28660 1.74025 1.48760 1.22837 0.93815 0.95275 1.03373 0.82830 1.23040 1.03338 0.91897 1.00107 1.23682 1.01753 0.88685 0.89197 1.89175 1.87676 1.21683 1.33910 1.23605 0.99213 0.92215 0.87360 1.77171 1.00026 1.09938 1.31556 1.48796 1.01784 1.07522 1.54344 1.19259 0.94926 0.72356 0.97864 1.21432 1.47639 0.98414 0.91710 0.93223 1.25744 0.93880 0.95912 1.02304 1.70005 1.45022 1.07563 1.33036 0.85337 0.78297 0.78187 0.78563 1.19922 1.19517 1.19404 0.89751 0.91214 0.87647 0.81794 0.73651 0.86793 0.90788 0.89210 0.88815 0.89471 0.87104 0.95729 0.93029 0.91700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.24 0.72 -2.08 16 2 C 0.09 3.74 6.92 41.38 0.29 4.03 16 3 C -0.30 -12.57 9.52 22.11 0.21 -12.36 16 4 C 0.27 11.09 8.11 133.33 1.08 12.17 16 5 N -0.62 -18.49 5.26 -307.51 -1.62 -20.11 16 6 C 0.52 14.20 7.04 87.66 0.62 14.82 16 7 O -0.55 -18.92 12.41 -3.05 -0.04 -18.96 16 8 C -0.13 -2.07 3.51 -10.52 -0.04 -2.11 16 9 H 0.15 1.29 8.14 -2.38 -0.02 1.27 16 10 C -0.15 -2.18 6.67 31.61 0.21 -1.97 16 11 C 0.04 0.61 7.65 72.48 0.55 1.16 16 12 O -0.41 -8.51 11.65 -148.98 -1.74 -10.25 16 13 C 0.05 0.79 7.17 72.48 0.52 1.31 16 14 N -0.36 -16.87 12.59 -54.45 -0.69 -17.55 16 15 N -0.34 -16.79 3.59 -338.45 -1.22 -18.01 16 16 C 0.27 14.67 5.99 85.63 0.51 15.18 16 17 C -0.55 -31.20 9.39 25.60 0.24 -30.96 16 18 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 19 C 0.02 1.24 5.46 84.65 0.46 1.70 16 20 N -0.92 -51.97 13.29 21.45 0.28 -51.68 16 21 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 25 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 26 H 0.07 2.42 7.07 -2.38 -0.02 2.41 16 27 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.16 6.64 5.92 -2.91 -0.02 6.63 16 29 H 0.43 9.63 8.82 -92.71 -0.82 8.81 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.58 6.50 -2.39 -0.02 1.57 16 32 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 33 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.45 7.71 -2.39 -0.02 1.43 16 35 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.02 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 38 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 Total: -1.00 -73.91 321.51 2.67 -71.24 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: 0.27 Total: 19.36 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 5.38 Total: 0.91 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.24 Total: -107.35 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -1.77 Total: -29.21 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -73.91 2.67 -71.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271126781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.465 kcal (2) G-P(sol) polarization free energy of solvation -73.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds