Wall clock time and date at job start Tue Mar 31 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47183 * 341.38233 * 3 2 1 5 5 C 1.36938 * 120.00266 * 263.91430 * 4 3 2 6 6 H 1.07997 * 119.99965 * 199.40174 * 5 4 3 7 7 C 1.38812 * 119.99791 * 19.40067 * 5 4 3 8 8 N 1.31615 * 120.00038 * 22.27339 * 7 5 4 9 9 Si 1.86798 * 119.99947 * 202.27273 * 7 5 4 10 10 H 1.48493 * 109.47311 * 59.99721 * 9 7 5 11 11 H 1.48496 * 109.47045 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.46804 * 299.99949 * 9 7 5 13 13 C 1.46505 * 119.99596 * 83.91473 * 4 3 2 14 14 C 1.53004 * 109.46889 * 90.00443 * 13 4 3 15 15 N 1.46505 * 109.46889 * 179.97438 * 14 13 4 16 16 C 1.33792 * 124.17519 * 269.95546 * 15 14 13 17 17 O 1.21538 * 123.76872 * 0.03065 * 16 15 14 18 18 N 1.34867 * 112.49838 * 180.12681 * 16 15 14 19 19 C 1.47309 * 106.43906 * 359.86267 * 18 16 15 20 20 C 1.53001 * 110.59910 * 241.52325 * 19 18 16 21 21 C 1.52998 * 110.59880 * 118.72879 * 19 18 16 22 22 C 1.34762 * 124.17810 * 89.99597 * 15 14 13 23 23 O 1.21239 * 127.15675 * 0.02562 * 22 15 14 24 24 H 4.40641 * 5.51255 * 179.97438 * 4 1 2 25 25 H 1.09003 * 109.47186 * 221.38850 * 3 2 1 26 26 H 1.08999 * 109.47358 * 101.38784 * 3 2 1 27 27 H 0.96998 * 120.00172 * 179.97438 * 8 7 5 28 28 H 1.08998 * 109.47515 * 329.99999 * 13 4 3 29 29 H 1.09000 * 109.47200 * 209.99821 * 13 4 3 30 30 H 1.08998 * 109.47405 * 59.99488 * 14 13 4 31 31 H 1.09006 * 109.46819 * 299.99271 * 14 13 4 32 32 H 0.97000 * 126.86917 * 179.97438 * 18 16 15 33 33 H 1.09003 * 109.47217 * 296.47061 * 20 19 18 34 34 H 1.09000 * 109.47050 * 56.47056 * 20 19 18 35 35 H 1.09000 * 109.47282 * 176.47043 * 20 19 18 36 36 H 1.08998 * 109.47186 * 183.52816 * 21 19 18 37 37 H 1.09000 * 109.47351 * 303.53383 * 21 19 18 38 38 H 1.09007 * 109.46915 * 63.52928 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3081 0.4410 5 6 3.4818 -1.5035 1.7512 6 1 4.1208 -2.3307 2.0230 7 6 3.0122 -0.6385 2.7299 8 7 1.9273 0.0744 2.5126 9 14 3.9198 -0.4861 4.3554 10 1 5.3089 -0.0247 4.1054 11 1 3.2203 0.4953 5.2229 12 1 3.9515 -1.8085 5.0305 13 6 3.2528 -2.4077 -0.5199 14 6 4.6460 -2.3856 -1.1519 15 7 4.7641 -3.4856 -2.1123 16 6 5.2006 -4.7114 -1.8011 17 8 5.5460 -5.0421 -0.6837 18 7 5.2169 -5.5392 -2.8657 19 6 4.7268 -4.7541 -4.0118 20 6 3.4444 -5.3686 -4.5763 21 6 5.8001 -4.6598 -5.0980 22 6 4.4471 -3.3875 -3.4184 23 8 4.0268 -2.4094 -3.9985 24 1 -1.0498 -0.0002 0.0003 25 1 3.0090 0.7718 0.6795 26 1 3.0093 0.2037 -1.0074 27 1 1.5989 0.6786 3.1967 28 1 2.4988 -2.2923 -1.2985 29 1 3.1020 -3.3570 -0.0060 30 1 5.4001 -2.5010 -0.3733 31 1 4.7968 -1.4363 -1.6659 32 1 5.4945 -6.4686 -2.8762 33 1 3.6587 -6.3647 -4.9635 34 1 2.6969 -5.4389 -3.7861 35 1 3.0640 -4.7399 -5.3814 36 1 5.4424 -4.0243 -5.9081 37 1 6.7089 -4.2319 -4.6748 38 1 6.0138 -5.6561 -5.4851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281292475.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:48:35 Heat of formation + Delta-G solvation = 41.349806 kcal Electronic energy + Delta-G solvation = -22153.395072 eV Core-core repulsion = 18806.717971 eV Total energy + Delta-G solvation = -3346.677101 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.40978 -38.48898 -36.85483 -36.23930 -34.98930 -31.90171 -31.53310 -31.13522 -28.56058 -27.83995 -26.03084 -24.72024 -23.73261 -21.77161 -20.90445 -20.08908 -17.89922 -17.42744 -16.75227 -16.28940 -16.07435 -15.70298 -15.47207 -14.78297 -14.49099 -14.08656 -13.83311 -13.77943 -13.40027 -13.03591 -12.90106 -12.60200 -12.53074 -12.49827 -12.04444 -11.83305 -11.46191 -11.16865 -10.76788 -10.64609 -10.45176 -10.21672 -10.00745 -9.95591 -9.70534 -9.53050 -8.91878 -8.71118 -8.42780 -7.00966 -5.78007 -3.22384 1.68350 2.32839 3.07971 3.15285 3.41371 3.46964 3.48991 3.86033 4.19827 4.31600 4.41413 4.50501 4.56081 5.14920 5.17406 5.23016 5.32194 5.33026 5.36548 5.52470 5.63671 5.76755 5.77115 5.80450 5.88443 5.95383 6.12087 6.49038 6.67459 6.75845 6.80436 7.19272 7.22051 7.42677 7.47663 7.79832 8.22521 8.29138 9.10398 9.21988 9.75652 10.21885 11.25240 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022205 B = 0.005009 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.657337 B = 5588.895944 C = 6433.670938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 C -0.097 4.097 3 C 0.267 3.733 4 N -0.579 5.579 5 C -0.273 4.273 6 H 0.077 0.923 7 C 0.008 3.992 8 N -0.886 5.886 9 Si 0.901 3.099 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.139 3.861 14 C 0.094 3.906 15 N -0.568 5.568 16 C 0.700 3.300 17 O -0.535 6.535 18 N -0.728 5.728 19 C 0.115 3.885 20 C -0.146 4.146 21 C -0.145 4.145 22 C 0.526 3.474 23 O -0.465 6.465 24 H 0.190 0.810 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.255 0.745 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.435 0.565 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.066 0.934 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.836 -9.593 -16.208 19.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 C -0.099 4.099 3 C 0.142 3.858 4 N -0.299 5.299 5 C -0.401 4.401 6 H 0.095 0.905 7 C -0.192 4.192 8 N -0.528 5.528 9 Si 0.730 3.270 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.209 1.209 13 C 0.011 3.989 14 C -0.028 4.028 15 N -0.313 5.313 16 C 0.400 3.600 17 O -0.407 6.407 18 N -0.394 5.394 19 C 0.024 3.976 20 C -0.205 4.205 21 C -0.203 4.203 22 C 0.312 3.688 23 O -0.334 6.334 24 H 0.207 0.793 25 H 0.112 0.888 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.116 0.884 31 H 0.106 0.894 32 H 0.279 0.721 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.713 -8.985 -15.678 18.951 hybrid contribution 0.137 -0.372 1.099 1.169 sum 5.849 -9.357 -14.578 18.284 Atomic orbital electron populations 1.24166 0.95332 1.04109 1.08157 1.24223 0.95285 0.96724 0.93717 1.17783 0.83006 0.88851 0.96142 1.43949 1.74609 1.05846 1.05537 1.19201 1.24918 1.13606 0.82384 0.90501 1.24945 0.95965 1.00540 0.97750 1.70137 1.19201 1.29111 1.34330 0.86390 0.79603 0.77583 0.83386 1.20891 1.21728 1.20882 1.20979 0.92058 0.93056 0.92814 1.22828 1.03503 0.85997 0.90504 1.46554 1.59843 1.13334 1.11612 1.16031 0.78191 0.80881 0.84847 1.91037 1.51940 1.77239 1.20479 1.45765 1.71168 1.14431 1.08037 1.21459 0.97430 0.89765 0.88921 1.21991 0.94530 1.01729 1.02218 1.21976 0.97289 1.03824 0.97211 1.20736 0.76261 0.89638 0.82137 1.90789 1.41452 1.35181 1.66018 0.79253 0.88798 0.94303 0.93427 0.94073 0.92662 0.88448 0.89430 0.72055 0.90494 0.91221 0.89854 0.89870 0.91449 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.03 19.25 29.55 0.57 -6.46 16 2 C -0.10 -2.42 11.50 -37.12 -0.43 -2.85 16 3 C 0.27 6.43 5.41 -6.83 -0.04 6.39 16 4 N -0.58 -14.35 2.49 -176.57 -0.44 -14.79 16 5 C -0.27 -7.40 9.63 -15.06 -0.14 -7.55 16 6 H 0.08 2.09 7.92 -52.49 -0.42 1.67 16 7 C 0.01 0.21 4.82 -17.43 -0.08 0.13 16 8 N -0.89 -25.39 9.61 55.49 0.53 -24.85 16 9 Si 0.90 21.76 29.61 -169.99 -5.03 16.73 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.14 2.97 6.00 -4.04 -0.02 2.94 16 14 C 0.09 1.72 6.02 -4.04 -0.02 1.69 16 15 N -0.57 -8.91 2.60 -120.62 -0.31 -9.23 16 16 C 0.70 10.65 8.63 -87.71 -0.76 9.90 16 17 O -0.53 -10.23 17.48 5.33 0.09 -10.13 16 18 N -0.73 -7.40 5.93 -52.85 -0.31 -7.72 16 19 C 0.12 1.09 1.37 -132.10 -0.18 0.91 16 20 C -0.15 -1.11 8.98 37.16 0.33 -0.77 16 21 C -0.14 -0.99 8.98 37.16 0.33 -0.66 16 22 C 0.53 7.35 6.98 -10.56 -0.07 7.28 16 23 O -0.47 -7.60 17.76 5.59 0.10 -7.50 16 24 H 0.19 3.74 7.80 -54.10 -0.42 3.32 16 25 H 0.09 2.42 6.59 -51.93 -0.34 2.08 16 26 H 0.04 0.83 8.12 -51.93 -0.42 0.40 16 27 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 28 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.05 1.25 8.04 -51.93 -0.42 0.83 16 30 H 0.10 1.88 7.86 -51.93 -0.41 1.47 16 31 H 0.09 1.54 8.01 -51.93 -0.42 1.13 16 32 H 0.44 3.18 8.96 -40.82 -0.37 2.81 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.35 8.14 -51.92 -0.42 -0.08 16 LS Contribution 332.90 15.07 5.02 5.02 Total: -1.00 -33.31 332.90 -6.17 -39.48 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.30 Total: 2.03 kcal Atomic # 6 Polarization: 11.48 SS G_CDS: -0.52 Total: 10.96 kcal Atomic # 7 Polarization: -56.05 SS G_CDS: -0.53 Total: -56.58 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.19 Total: -17.63 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.31 -6.17 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281292475.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.832 kcal (2) G-P(sol) polarization free energy of solvation -33.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds