Wall clock time and date at job start Tue Mar 31 2020 00:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.20755 * 120.00204 * 2 1 4 4 C 1.50698 * 120.00055 * 180.02562 * 2 1 3 5 5 C 1.53004 * 109.47297 * 179.97438 * 4 2 1 6 6 C 1.50704 * 109.46888 * 179.97438 * 5 4 2 7 7 O 1.21291 * 120.00259 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99258 * 179.97438 * 6 5 4 9 9 C 1.40162 * 119.99437 * 180.02562 * 8 6 5 10 10 C 1.40415 * 125.97631 * 0.31570 * 9 8 6 11 11 C 1.35232 * 107.86655 * 180.13084 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.84998 * 11 10 9 13 13 N 1.34968 * 107.86163 * 359.58679 * 11 10 9 14 14 C 1.46509 * 125.97450 * 180.23081 * 13 11 10 15 15 C 1.50698 * 109.47025 * 89.99735 * 14 13 11 16 16 H 1.08000 * 120.00464 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99358 * 179.97438 * 15 14 13 18 18 N 1.31506 * 120.00418 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99496 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47105 * 90.00179 * 19 17 15 21 21 H 1.48499 * 109.46684 * 210.00001 * 19 17 15 22 22 H 1.48503 * 109.47226 * 329.99788 * 19 17 15 23 23 N 1.31221 * 125.97269 * 179.97438 * 9 8 6 24 24 H 1.09006 * 109.47393 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47267 * 299.99754 * 1 2 3 26 26 H 1.08994 * 109.47588 * 59.99845 * 1 2 3 27 27 H 1.09003 * 109.47369 * 59.99792 * 4 2 1 28 28 H 1.09003 * 109.47238 * 299.99857 * 4 2 1 29 29 H 1.08995 * 109.46550 * 60.00023 * 5 4 2 30 30 H 1.08990 * 109.46928 * 299.99983 * 5 4 2 31 31 H 0.96991 * 120.00480 * 0.02562 * 8 6 5 32 32 H 1.07995 * 126.06342 * 0.02562 * 10 9 8 33 33 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 34 34 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 35 35 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 36 36 H 1.08994 * 109.46750 * 210.00045 * 14 13 11 37 37 H 1.09004 * 109.46474 * 329.99737 * 14 13 11 38 38 H 0.96998 * 120.00265 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0457 0.0000 4 6 2.2604 -1.3051 -0.0006 5 6 3.7647 -1.0255 -0.0011 6 6 4.5181 -2.3307 -0.0011 7 8 3.9117 -3.3811 -0.0011 8 7 5.8659 -2.3306 -0.0020 9 6 6.5667 -3.5445 -0.0025 10 6 5.9950 -4.8270 -0.0084 11 6 7.0017 -5.7300 -0.0038 12 6 6.8487 -7.2292 -0.0043 13 7 8.1676 -5.0501 -0.0046 14 6 9.5083 -5.6409 -0.0055 15 6 9.9670 -5.8436 -1.4266 16 1 9.3244 -5.5603 -2.2471 17 6 11.2076 -6.3897 -1.6792 18 7 11.9903 -6.7342 -0.6802 19 14 11.7765 -6.6403 -3.4409 20 1 12.4913 -5.4254 -3.9077 21 1 12.6916 -7.8081 -3.5040 22 1 10.5987 -6.8868 -4.3111 23 7 7.8718 -3.6811 -0.0039 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.9971 -1.8763 -0.8908 28 1 1.9971 -1.8771 0.8892 29 1 4.0283 -0.4542 0.8889 30 1 4.0276 -0.4538 -0.8910 31 1 6.3509 -1.4907 -0.0023 32 1 4.9388 -5.0522 -0.0137 33 1 6.8129 -7.5911 1.0232 34 1 7.6968 -7.6807 -0.5192 35 1 5.9259 -7.5001 -0.5174 36 1 10.2000 -4.9729 0.5078 37 1 9.4822 -6.6018 0.5085 38 1 12.8628 -7.1188 -0.8579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282877250.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:06 Heat of formation + Delta-G solvation = -30.482576 kcal Electronic energy + Delta-G solvation = -20760.744835 eV Core-core repulsion = 17410.952847 eV Total energy + Delta-G solvation = -3349.791987 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31045 -40.92287 -40.08858 -36.36297 -35.30291 -34.05798 -32.98577 -32.61924 -31.04409 -28.69238 -27.88216 -26.47334 -24.78686 -22.54719 -21.27252 -20.66499 -20.39116 -18.81566 -18.05367 -17.66928 -17.15964 -17.09672 -16.38114 -16.27933 -16.04046 -15.75157 -15.62910 -14.92466 -14.53801 -14.41419 -14.14491 -13.80845 -13.59995 -13.55246 -13.15530 -13.01116 -12.92037 -12.84946 -12.82491 -12.70062 -12.26094 -12.15465 -12.08761 -11.54768 -11.34497 -10.88730 -10.74684 -10.61322 -9.59089 -9.14653 -8.33954 -6.51886 0.90850 1.04963 1.33162 1.37279 1.39171 1.43454 1.50682 2.20672 2.27601 2.39661 2.95684 3.17604 3.59865 3.80881 4.03798 4.13200 4.15529 4.33601 4.47902 4.62532 4.67005 4.76493 4.78732 4.81689 4.85968 4.92135 4.97987 4.99070 5.05348 5.15521 5.23912 5.27476 5.52434 5.79782 5.94676 6.25553 6.26841 6.59745 6.60902 6.98532 7.11778 7.19256 8.72032 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033736 B = 0.002998 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.778686 B = 9337.966437 C = 9629.009117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.364 3.636 3 O -0.503 6.503 4 C -0.157 4.157 5 C -0.119 4.119 6 C 0.521 3.479 7 O -0.545 6.545 8 N -0.628 5.628 9 C 0.269 3.731 10 C -0.297 4.297 11 C 0.086 3.914 12 C -0.086 4.086 13 N -0.344 5.344 14 C 0.275 3.725 15 C -0.554 4.554 16 H 0.049 0.951 17 C 0.023 3.977 18 N -0.918 5.918 19 Si 0.971 3.029 20 H -0.275 1.275 21 H -0.270 1.270 22 H -0.269 1.269 23 N -0.361 5.361 24 H 0.103 0.897 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.424 0.576 32 H 0.171 0.829 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.103 0.897 36 H 0.023 0.977 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.314 8.219 1.700 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.243 3.757 3 O -0.380 6.380 4 C -0.195 4.195 5 C -0.159 4.159 6 C 0.310 3.690 7 O -0.420 6.420 8 N -0.278 5.278 9 C 0.015 3.985 10 C -0.328 4.328 11 C -0.044 4.044 12 C -0.144 4.144 13 N -0.127 5.127 14 C 0.157 3.843 15 C -0.592 4.592 16 H 0.067 0.933 17 C -0.178 4.178 18 N -0.556 5.556 19 Si 0.795 3.205 20 H -0.201 1.201 21 H -0.194 1.194 22 H -0.194 1.194 23 N -0.192 5.192 24 H 0.122 0.878 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.262 0.738 32 H 0.188 0.812 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.041 0.959 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -20.051 8.517 1.762 21.856 hybrid contribution 0.497 -0.107 -0.675 0.845 sum -19.553 8.410 1.087 21.313 Atomic orbital electron populations 1.22274 0.91719 1.06430 1.05364 1.24999 0.93461 0.89158 0.68070 1.90426 1.72917 1.36454 1.38238 1.21993 0.92554 0.97703 1.07217 1.21462 0.95038 0.92326 1.07048 1.21447 0.80352 0.92899 0.74303 1.90618 1.67957 1.34561 1.48883 1.42764 1.06680 1.05728 1.72579 1.19428 0.89972 0.88347 1.00716 1.21454 1.00646 0.89111 1.21606 1.21792 0.85454 0.97741 0.99420 1.20507 1.04203 0.85519 1.04135 1.48801 1.07411 1.01942 1.54513 1.19238 0.74540 0.92784 0.97778 1.21435 1.02582 1.43420 0.91755 0.93278 1.25739 0.95718 0.94112 1.02269 1.69996 1.10642 1.41920 1.33034 0.85353 0.78314 0.78180 0.78632 1.20055 1.19438 1.19358 1.77178 1.13345 0.96998 1.31677 0.87831 0.88274 0.88333 0.86600 0.86453 0.86722 0.86899 0.73828 0.81223 0.88856 0.91526 0.87793 0.95870 0.92992 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.31 10.33 71.23 0.74 -0.57 16 2 C 0.36 4.75 7.27 29.10 0.21 4.96 16 3 O -0.50 -10.47 16.72 -1.43 -0.02 -10.50 16 4 C -0.16 -2.02 4.84 29.85 0.14 -1.88 16 5 C -0.12 -1.94 4.99 29.85 0.15 -1.79 16 6 C 0.52 13.24 7.80 87.66 0.68 13.93 16 7 O -0.54 -16.82 13.11 -3.06 -0.04 -16.86 16 8 N -0.63 -18.62 5.45 -307.50 -1.68 -20.29 16 9 C 0.27 10.92 8.11 133.32 1.08 12.00 16 10 C -0.30 -11.97 9.52 22.11 0.21 -11.76 16 11 C 0.09 3.63 6.92 41.38 0.29 3.92 16 12 C -0.09 -2.83 9.89 71.24 0.70 -2.12 16 13 N -0.34 -16.81 3.59 -338.43 -1.22 -18.03 16 14 C 0.28 14.69 5.81 85.63 0.50 15.19 16 15 C -0.55 -31.24 9.39 25.60 0.24 -31.00 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.02 1.25 5.46 84.66 0.46 1.71 16 18 N -0.92 -51.99 13.29 21.45 0.28 -51.71 16 19 Si 0.97 43.15 29.54 68.60 2.03 45.18 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 23 N -0.36 -17.15 12.59 -54.44 -0.69 -17.83 16 24 H 0.10 0.28 8.00 -2.38 -0.02 0.27 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.12 1.39 8.10 -2.39 -0.02 1.37 16 28 H 0.12 1.37 8.10 -2.39 -0.02 1.35 16 29 H 0.11 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.11 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.42 10.17 8.82 -92.71 -0.82 9.35 16 32 H 0.17 6.42 5.92 -2.91 -0.02 6.40 16 33 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.42 7.71 -2.39 -0.02 2.41 16 35 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 36 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.05 2.73 7.65 -2.39 -0.02 2.72 16 38 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -73.36 333.26 4.34 -69.02 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.26 Total: 18.44 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 5.41 Total: 2.57 kcal Atomic # 7 Polarization: -104.57 SS G_CDS: -3.29 Total: -107.86 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.06 Total: -27.35 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -73.36 4.34 -69.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282877250.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.536 kcal (2) G-P(sol) polarization free energy of solvation -73.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds