Wall clock time and date at job start Tue Mar 31 2020 02:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 120.00063 * 2 1 4 4 N 1.46504 * 109.46699 * 124.99757 * 3 2 1 5 5 C 1.46498 * 120.00159 * 270.00101 * 4 3 2 6 6 C 1.50707 * 109.46935 * 269.99897 * 5 4 3 7 7 H 1.07999 * 120.00037 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99606 * 179.97438 * 6 5 4 9 9 N 1.31515 * 119.99725 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00464 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.46864 * 89.99378 * 10 8 6 12 12 H 1.48497 * 109.47253 * 209.99546 * 10 8 6 13 13 H 1.48505 * 109.46859 * 329.99821 * 10 8 6 14 14 C 1.34775 * 119.99871 * 90.00135 * 4 3 2 15 15 O 1.21575 * 120.00367 * 179.97438 * 14 4 3 16 16 N 1.34777 * 119.99877 * 0.02562 * 14 4 3 17 17 C 1.38637 * 119.99832 * 180.02562 * 16 14 4 18 18 N 1.30953 * 125.70152 * 0.26417 * 17 16 14 19 19 C 1.34646 * 108.62137 * 180.17243 * 18 17 16 20 20 C 1.50706 * 126.11173 * 179.86539 * 19 18 17 21 21 C 1.34151 * 107.78003 * 359.59673 * 19 18 17 22 22 C 1.50706 * 126.37647 * 180.27418 * 21 19 18 23 23 O 1.34198 * 125.69900 * 179.97438 * 17 16 14 24 24 H 1.08005 * 120.00097 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.00446 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99734 * 180.02562 * 2 1 3 27 27 H 1.09000 * 109.47400 * 5.00029 * 3 2 1 28 28 H 1.08999 * 109.47265 * 244.99498 * 3 2 1 29 29 H 1.08992 * 109.47267 * 29.99850 * 5 4 3 30 30 H 1.08993 * 109.47028 * 150.00366 * 5 4 3 31 31 H 0.96994 * 120.00498 * 180.02562 * 9 8 6 32 32 H 0.96995 * 120.00596 * 359.97438 * 16 14 4 33 33 H 1.09001 * 109.46953 * 269.68677 * 20 19 18 34 34 H 1.09000 * 109.47318 * 29.68275 * 20 19 18 35 35 H 1.09000 * 109.47161 * 149.68905 * 20 19 18 36 36 H 1.08992 * 109.46900 * 90.00271 * 22 21 19 37 37 H 1.08998 * 109.46973 * 210.00376 * 22 21 19 38 38 H 1.09000 * 109.46537 * 330.00056 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.5588 1.8648 2.4249 6 6 2.8443 3.3435 2.4805 7 1 3.3034 3.8369 1.6366 8 6 2.5184 4.0665 3.6084 9 7 2.7680 5.3569 3.6571 10 14 1.7237 3.2132 5.0677 11 1 2.7797 2.7229 5.9896 12 1 0.8469 4.1732 5.7852 13 1 0.9129 2.0651 4.5884 14 6 4.2496 0.8660 0.9825 15 8 5.0218 0.8886 1.9213 16 7 4.6499 0.3762 -0.2076 17 6 5.9416 -0.1035 -0.3607 18 7 6.8595 -0.1384 0.5727 19 6 7.9833 -0.6655 0.0510 20 6 9.2836 -0.8842 0.7808 21 6 7.7370 -0.9666 -1.2328 22 6 8.7061 -1.5839 -2.2080 23 8 6.4586 -0.6145 -1.4887 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3587 2.1316 0.0896 28 1 2.6214 1.4025 -0.9313 29 1 1.4888 1.6966 2.5460 30 1 3.0989 1.3601 3.2260 31 1 2.5392 5.8655 4.4506 32 1 4.0341 0.3584 -0.9567 33 1 9.9120 0.0003 0.6765 34 1 9.0819 -1.0641 1.8368 35 1 9.7975 -1.7470 0.3569 36 1 8.6246 -2.6699 -2.1628 37 1 8.4727 -1.2437 -3.2168 38 1 9.7218 -1.2846 -1.9494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291714473.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:41:51 Heat of formation + Delta-G solvation = 41.623930 kcal Electronic energy + Delta-G solvation = -21698.470632 eV Core-core repulsion = 18351.805417 eV Total energy + Delta-G solvation = -3346.665215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.13807 -39.85698 -36.08540 -35.06078 -34.80412 -33.17594 -32.39332 -31.90895 -29.10114 -28.34160 -25.98818 -25.17551 -23.09731 -21.75209 -20.93480 -20.17872 -19.27246 -18.09376 -17.19163 -16.98482 -16.81112 -15.78423 -15.18318 -14.87005 -14.50238 -14.09152 -13.91082 -13.55609 -13.25945 -13.24411 -13.11123 -13.06474 -12.41291 -12.36652 -11.99900 -11.95284 -11.67905 -11.41942 -11.06838 -10.94173 -10.53591 -10.21719 -10.10406 -10.04930 -9.59125 -9.39186 -9.35534 -8.57970 -8.02267 -7.71430 -6.07879 -4.07152 1.58739 1.83360 2.30202 2.88976 3.30845 3.36394 3.39206 3.45112 3.79680 4.08559 4.40602 4.73509 4.84737 4.98389 5.06384 5.18759 5.22678 5.25149 5.27836 5.37539 5.58063 5.63708 5.72579 5.81033 5.85349 6.00535 6.11502 6.34400 6.37754 6.63174 6.73186 6.75495 6.81970 7.08499 7.27957 7.59294 7.97851 8.36863 8.46985 8.94498 9.03169 9.51610 11.05474 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018213 B = 0.004890 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.000705 B = 5724.519282 C = 6785.479048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.134 3.866 4 N -0.593 5.593 5 C 0.234 3.766 6 C -0.532 4.532 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.896 5.896 10 Si 0.875 3.125 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.703 3.297 15 O -0.514 6.514 16 N -0.634 5.634 17 C 0.444 3.556 18 N -0.458 5.458 19 C 0.010 3.990 20 C -0.070 4.070 21 C -0.088 4.088 22 C -0.054 4.054 23 O -0.221 6.221 24 H 0.102 0.898 25 H 0.096 0.904 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.265 0.735 32 H 0.414 0.586 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.500 -14.736 -13.041 20.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.196 4.196 3 C 0.010 3.990 4 N -0.328 5.328 5 C 0.114 3.886 6 C -0.570 4.570 7 H 0.093 0.907 8 C -0.128 4.128 9 N -0.534 5.534 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 C 0.404 3.596 15 O -0.383 6.383 16 N -0.296 5.296 17 C 0.145 3.855 18 N -0.195 5.195 19 C -0.111 4.111 20 C -0.127 4.127 21 C -0.141 4.141 22 C -0.111 4.111 23 O -0.109 6.109 24 H 0.120 0.880 25 H 0.114 0.886 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.252 0.748 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.884 -14.284 -11.546 19.005 hybrid contribution -0.891 -0.453 -0.450 1.096 sum 3.993 -14.737 -11.996 19.417 Atomic orbital electron populations 1.23867 0.95753 1.02005 0.99677 1.23461 0.96620 0.98875 1.00677 1.20628 0.93341 0.96014 0.89029 1.47191 1.08331 1.63353 1.13940 1.19669 0.94904 0.95060 0.78984 1.21337 1.41347 0.91072 1.03274 0.90651 1.24822 0.95243 0.94705 0.98051 1.69891 1.47634 1.06636 1.29283 0.86875 0.79888 0.79656 0.83436 1.19786 1.21060 1.18982 1.15598 0.83531 0.79235 0.81249 1.91066 1.51605 1.58308 1.37323 1.41847 1.07468 1.64761 1.15525 1.21052 0.88354 0.95831 0.80215 1.71221 0.98750 1.21516 1.28022 1.21585 0.96398 1.01399 0.91683 1.20100 0.90238 1.01798 1.00561 1.22724 0.82945 1.10491 0.97935 1.20120 0.94776 0.99869 0.96349 1.84281 1.25854 1.63806 1.36959 0.88020 0.88597 0.87677 0.88341 0.91190 0.94655 0.94216 0.92524 0.74798 0.90703 0.90365 0.90989 0.90470 0.90813 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 14.32 29.01 0.42 -1.59 16 2 C -0.18 -2.27 9.85 -36.03 -0.35 -2.62 16 3 C 0.13 2.02 5.61 -5.19 -0.03 1.99 16 4 N -0.59 -12.16 2.44 -182.19 -0.44 -12.60 16 5 C 0.23 5.69 4.23 -5.19 -0.02 5.66 16 6 C -0.53 -15.22 9.94 -34.44 -0.34 -15.56 16 7 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 10 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 14 C 0.70 15.24 8.24 -86.92 -0.72 14.52 16 15 O -0.51 -13.63 14.59 5.30 0.08 -13.56 16 16 N -0.63 -10.98 5.26 -17.47 -0.09 -11.07 16 17 C 0.44 8.11 8.98 -86.61 -0.78 7.34 16 18 N -0.46 -9.29 9.46 -10.57 -0.10 -9.39 16 19 C 0.01 0.15 7.10 -82.79 -0.59 -0.44 16 20 C -0.07 -0.80 10.04 36.01 0.36 -0.44 16 21 C -0.09 -1.19 7.38 -35.74 -0.26 -1.45 16 22 C -0.05 -0.43 10.03 36.01 0.36 -0.07 16 23 O -0.22 -3.41 10.80 3.93 0.04 -3.37 16 24 H 0.10 1.13 7.84 -52.48 -0.41 0.72 16 25 H 0.10 0.94 8.06 -52.49 -0.42 0.52 16 26 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 27 H 0.10 1.53 7.72 -51.93 -0.40 1.13 16 28 H 0.07 0.86 6.36 -51.93 -0.33 0.53 16 29 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.04 1.04 6.85 -51.93 -0.36 0.69 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.41 5.46 6.55 -40.82 -0.27 5.19 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.58 7.77 -51.93 -0.40 0.18 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.54 7.77 -51.93 -0.40 0.14 16 LS Contribution 328.95 15.07 4.96 4.96 Total: -1.00 -36.95 328.95 -6.58 -43.53 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.07 Total: 2.12 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -2.05 Total: 9.40 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.14 Total: -59.96 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.12 Total: -16.93 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -36.95 -6.58 -43.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291714473.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.154 kcal (2) G-P(sol) polarization free energy of solvation -36.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds