Wall clock time and date at job start Tue Mar 31 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.56476 * 2 1 4 4 O 1.21291 * 120.00017 * 237.32638 * 3 2 1 5 5 N 1.34772 * 119.99764 * 57.32235 * 3 2 1 6 6 C 1.40158 * 119.99841 * 179.97438 * 5 3 2 7 7 C 1.40408 * 125.97559 * 0.02562 * 6 5 3 8 8 C 1.35233 * 107.87139 * 179.97438 * 7 6 5 9 9 N 1.34979 * 107.85987 * 359.97438 * 8 7 6 10 10 C 1.46496 * 125.97612 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47090 * 124.99697 * 10 9 8 12 12 H 1.08003 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00034 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99642 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99722 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47471 * 90.00169 * 15 13 11 17 17 H 1.48499 * 109.46820 * 209.99855 * 15 13 11 18 18 H 1.48496 * 109.47308 * 329.99644 * 15 13 11 19 19 N 1.31224 * 125.97256 * 179.69170 * 6 5 3 20 20 C 1.54507 * 110.50897 * 237.32551 * 2 1 3 21 21 C 1.54483 * 104.06211 * 241.35344 * 20 2 1 22 22 O 1.44428 * 104.89902 * 335.96812 * 21 20 2 23 23 C 1.44688 * 105.13885 * 40.49479 * 22 21 20 24 24 H 1.08998 * 109.46847 * 182.67596 * 1 2 3 25 25 H 1.08997 * 109.46719 * 302.67465 * 1 2 3 26 26 H 1.09000 * 109.46894 * 62.67767 * 1 2 3 27 27 H 0.96998 * 120.00220 * 359.97438 * 5 3 2 28 28 H 1.07995 * 126.06484 * 359.97438 * 7 6 5 29 29 H 1.08000 * 126.07495 * 180.02562 * 8 7 6 30 30 H 1.08994 * 109.47482 * 244.99996 * 10 9 8 31 31 H 1.09006 * 109.47318 * 5.00363 * 10 9 8 32 32 H 0.97001 * 119.99093 * 180.02562 * 14 13 11 33 33 H 1.09005 * 110.51421 * 122.70915 * 20 2 1 34 34 H 1.09001 * 110.51335 * 359.97438 * 20 2 1 35 35 H 1.09002 * 110.37322 * 94.85326 * 21 20 2 36 36 H 1.08999 * 110.37312 * 217.08002 * 21 20 2 37 37 H 1.08996 * 110.35300 * 200.67684 * 23 22 21 38 38 H 1.08999 * 110.44929 * 78.41250 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0594 1.4110 0.0000 4 8 2.8034 1.7796 -0.8842 5 7 1.7061 2.2632 0.9824 6 6 2.1988 3.5753 0.9828 7 6 3.0630 4.1321 0.0264 8 6 3.3021 5.4153 0.3801 9 7 2.6172 5.6660 1.5159 10 6 2.5950 6.9366 2.2447 11 6 1.1687 7.3910 2.4188 12 1 0.3597 6.7929 2.0262 13 6 0.8966 8.5704 3.0793 14 7 1.8819 9.2989 3.5569 15 14 -0.8713 9.1332 3.2956 16 1 -1.4131 8.5864 4.5656 17 1 -0.9170 10.6169 3.3363 18 1 -1.6895 8.6438 2.1571 19 7 1.9283 4.5001 1.8736 20 6 2.0714 -0.7813 -1.2181 21 6 2.8757 -1.9422 -0.5922 22 8 3.2422 -1.4730 0.7237 23 6 2.0713 -0.7812 1.2178 24 1 -0.3633 -1.0265 0.0480 25 1 -0.3633 0.5548 0.8650 26 1 -0.3633 0.4717 -0.9130 27 1 1.1108 1.9686 1.6893 28 1 3.4654 3.6255 -0.8383 29 1 3.9289 6.1154 -0.1521 30 1 3.0556 6.8023 3.2234 31 1 3.1495 7.6879 1.6823 32 1 1.6904 10.1284 4.0219 33 1 2.7219 -0.1470 -1.8204 34 1 1.2490 -1.1679 -1.8201 35 1 2.2564 -2.8360 -0.5175 36 1 3.7678 -2.1479 -1.1838 37 1 2.3465 -0.0939 2.0177 38 1 1.3279 -1.4956 1.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330858633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:59 Heat of formation + Delta-G solvation = -0.682110 kcal Electronic energy + Delta-G solvation = -21532.572145 eV Core-core repulsion = 18184.072403 eV Total energy + Delta-G solvation = -3348.499742 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09629 -40.16318 -38.36326 -34.86318 -34.02738 -33.27898 -31.00100 -29.91741 -29.29926 -26.84757 -26.63258 -24.15848 -23.14291 -22.44936 -20.85990 -19.99192 -19.11692 -17.44479 -16.62070 -16.47240 -16.28772 -16.00366 -15.49800 -15.04526 -14.90017 -14.29071 -14.19155 -13.77940 -13.49267 -13.10316 -12.90458 -12.61145 -12.34720 -12.27073 -11.91500 -11.79426 -11.69260 -11.36775 -11.04475 -10.96755 -10.90074 -10.45131 -10.27241 -10.20296 -9.96255 -9.52230 -9.49178 -8.64859 -8.15371 -7.49344 -6.25794 -4.30939 2.26389 2.70866 2.90094 3.22595 3.28392 3.33347 3.59941 3.76982 3.80651 4.03443 4.29933 4.39026 4.57222 4.70005 4.85025 4.92399 5.09400 5.16806 5.23207 5.35005 5.40219 5.45543 5.57197 5.59697 5.73995 5.78821 5.92836 6.25024 6.43943 6.47516 6.59265 6.84492 7.03985 7.37655 7.54090 7.69448 7.87170 8.02674 8.20227 8.61083 8.78508 9.34715 10.83010 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.003527 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.500489 B = 7935.843802 C = 8324.450324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.535 3.465 4 O -0.510 6.510 5 N -0.628 5.628 6 C 0.256 3.744 7 C -0.287 4.287 8 C 0.052 3.948 9 N -0.318 5.318 10 C 0.258 3.742 11 C -0.529 4.529 12 H 0.069 0.931 13 C 0.062 3.938 14 N -0.895 5.895 15 Si 0.908 3.092 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.273 1.273 19 N -0.304 5.304 20 C -0.143 4.143 21 C 0.045 3.955 22 O -0.369 6.369 23 C 0.056 3.944 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.409 0.591 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.267 0.733 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 -19.929 -7.352 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C 0.320 3.680 4 O -0.383 6.383 5 N -0.275 5.275 6 C 0.003 3.997 7 C -0.318 4.318 8 C -0.098 4.098 9 N -0.100 5.100 10 C 0.140 3.860 11 C -0.567 4.567 12 H 0.087 0.913 13 C -0.141 4.141 14 N -0.533 5.533 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.210 1.210 18 H -0.197 1.197 19 N -0.135 5.135 20 C -0.181 4.181 21 C -0.031 4.031 22 O -0.287 6.287 23 C -0.021 4.021 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.245 0.755 28 H 0.176 0.824 29 H 0.186 0.814 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.136 -19.126 -6.650 20.281 hybrid contribution -1.014 0.253 -0.225 1.069 sum -2.150 -18.873 -6.874 20.201 Atomic orbital electron populations 1.21864 0.90976 1.03266 1.03534 1.22143 0.98071 0.92743 0.98583 1.20120 0.80638 0.86258 0.81005 1.90612 1.34900 1.76771 1.36048 1.42414 1.48676 1.08502 1.27954 1.19110 0.98528 0.85532 0.96566 1.21506 1.09955 0.94808 1.05567 1.22566 0.99192 0.97387 0.90681 1.49089 1.32112 1.10044 1.18739 1.19756 0.99540 0.74393 0.92264 1.21255 0.91440 1.06559 1.37477 0.91309 1.24950 0.98262 0.96008 0.94872 1.69923 1.31468 1.14633 1.37306 0.86317 0.83726 0.77608 0.78786 1.20324 1.20969 1.19728 1.77325 1.20806 0.92409 1.22929 1.23090 1.01082 0.97116 0.96830 1.23444 0.99742 0.95900 0.84041 1.89236 1.34781 1.73522 1.31157 1.23589 0.88507 0.95025 0.95009 0.90854 0.91450 0.91168 0.75517 0.82355 0.81447 0.93690 0.92501 0.92306 0.87939 0.89702 0.92165 0.88785 0.88619 0.90629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.21 37.16 0.31 -0.71 16 2 C -0.11 -1.10 0.90 -154.09 -0.14 -1.24 16 3 C 0.53 7.68 6.44 -10.99 -0.07 7.61 16 4 O -0.51 -8.92 12.41 5.55 0.07 -8.85 16 5 N -0.63 -9.67 5.15 -11.13 -0.06 -9.73 16 6 C 0.26 5.14 8.11 -154.39 -1.25 3.89 16 7 C -0.29 -5.75 9.60 -39.84 -0.38 -6.13 16 8 C 0.05 1.04 11.44 -17.24 -0.20 0.85 16 9 N -0.32 -7.41 3.67 -62.56 -0.23 -7.64 16 10 C 0.26 6.56 6.26 -5.19 -0.03 6.53 16 11 C -0.53 -14.69 9.23 -34.44 -0.32 -15.01 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 15 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 N -0.30 -6.98 12.42 31.44 0.39 -6.59 16 20 C -0.14 -1.30 6.32 -25.16 -0.16 -1.46 16 21 C 0.05 0.39 7.62 37.94 0.29 0.68 16 22 O -0.37 -4.30 11.67 -35.23 -0.41 -4.72 16 23 C 0.06 0.53 6.73 37.93 0.26 0.78 16 24 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 25 H 0.07 0.46 7.44 -51.93 -0.39 0.08 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.41 5.11 8.12 -40.82 -0.33 4.78 16 28 H 0.16 3.09 5.92 -52.49 -0.31 2.78 16 29 H 0.17 2.75 8.06 -52.49 -0.42 2.33 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 32 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.10 1.17 6.50 -51.93 -0.34 0.83 16 34 H 0.08 0.57 7.73 -51.93 -0.40 0.17 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.93 7.72 -51.93 -0.40 0.53 16 38 H 0.08 0.51 7.82 -51.93 -0.41 0.10 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -33.06 319.93 -6.57 -39.63 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.07 Total: 4.00 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.80 Total: -2.62 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.84 Total: -48.52 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.34 Total: -13.57 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.06 -6.57 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330858633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.951 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds