Wall clock time and date at job start Tue Mar 31 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50703 * 110.56476 * 2 1 4 4 O 1.21291 * 120.00017 * 237.32638 * 3 2 1 5 5 N 1.34772 * 119.99764 * 57.32235 * 3 2 1 6 6 C 1.40158 * 119.99841 * 179.97438 * 5 3 2 7 7 C 1.40408 * 125.97559 * 0.02562 * 6 5 3 8 8 C 1.35233 * 107.87139 * 179.97438 * 7 6 5 9 9 N 1.34979 * 107.85987 * 359.97438 * 8 7 6 10 10 C 1.46496 * 125.97612 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47090 * 124.99697 * 10 9 8 12 12 H 1.08003 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00034 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99642 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99722 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47471 * 90.00169 * 15 13 11 17 17 H 1.48499 * 109.46820 * 209.99855 * 15 13 11 18 18 H 1.48496 * 109.47308 * 329.99644 * 15 13 11 19 19 N 1.31224 * 125.97256 * 179.69170 * 6 5 3 20 20 C 1.54507 * 110.50897 * 237.32551 * 2 1 3 21 21 C 1.54483 * 104.06211 * 241.35344 * 20 2 1 22 22 O 1.44428 * 104.89902 * 335.96812 * 21 20 2 23 23 C 1.44688 * 105.13885 * 40.49479 * 22 21 20 24 24 H 1.08998 * 109.46847 * 182.67596 * 1 2 3 25 25 H 1.08997 * 109.46719 * 302.67465 * 1 2 3 26 26 H 1.09000 * 109.46894 * 62.67767 * 1 2 3 27 27 H 0.96998 * 120.00220 * 359.97438 * 5 3 2 28 28 H 1.07995 * 126.06484 * 359.97438 * 7 6 5 29 29 H 1.08000 * 126.07495 * 180.02562 * 8 7 6 30 30 H 1.08994 * 109.47482 * 244.99996 * 10 9 8 31 31 H 1.09006 * 109.47318 * 5.00363 * 10 9 8 32 32 H 0.97001 * 119.99093 * 180.02562 * 14 13 11 33 33 H 1.09005 * 110.51421 * 122.70915 * 20 2 1 34 34 H 1.09001 * 110.51335 * 359.97438 * 20 2 1 35 35 H 1.09002 * 110.37322 * 94.85326 * 21 20 2 36 36 H 1.08999 * 110.37312 * 217.08002 * 21 20 2 37 37 H 1.08996 * 110.35300 * 200.67684 * 23 22 21 38 38 H 1.08999 * 110.44929 * 78.41250 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0594 1.4110 0.0000 4 8 2.8034 1.7796 -0.8842 5 7 1.7061 2.2632 0.9824 6 6 2.1988 3.5753 0.9828 7 6 3.0630 4.1321 0.0264 8 6 3.3021 5.4153 0.3801 9 7 2.6172 5.6660 1.5159 10 6 2.5950 6.9366 2.2447 11 6 1.1687 7.3910 2.4188 12 1 0.3597 6.7929 2.0262 13 6 0.8966 8.5704 3.0793 14 7 1.8819 9.2989 3.5569 15 14 -0.8713 9.1332 3.2956 16 1 -1.4131 8.5864 4.5656 17 1 -0.9170 10.6169 3.3363 18 1 -1.6895 8.6438 2.1571 19 7 1.9283 4.5001 1.8736 20 6 2.0714 -0.7813 -1.2181 21 6 2.8757 -1.9422 -0.5922 22 8 3.2422 -1.4730 0.7237 23 6 2.0713 -0.7812 1.2178 24 1 -0.3633 -1.0265 0.0480 25 1 -0.3633 0.5548 0.8650 26 1 -0.3633 0.4717 -0.9130 27 1 1.1108 1.9686 1.6893 28 1 3.4654 3.6255 -0.8383 29 1 3.9289 6.1154 -0.1521 30 1 3.0556 6.8023 3.2234 31 1 3.1495 7.6879 1.6823 32 1 1.6904 10.1284 4.0219 33 1 2.7219 -0.1470 -1.8204 34 1 1.2490 -1.1679 -1.8201 35 1 2.2564 -2.8360 -0.5175 36 1 3.7678 -2.1479 -1.1838 37 1 2.3465 -0.0939 2.0177 38 1 1.3279 -1.4956 1.5713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330858633.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:58 Heat of formation + Delta-G solvation = -23.320940 kcal Electronic energy + Delta-G solvation = -21533.553839 eV Core-core repulsion = 18184.072403 eV Total energy + Delta-G solvation = -3349.481435 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.39450 -41.44878 -39.41227 -36.32096 -35.39469 -34.69765 -32.74037 -31.04615 -30.58884 -28.62845 -27.37049 -25.55533 -24.42560 -23.58447 -22.32025 -21.44661 -20.30234 -18.71466 -18.54356 -17.92485 -17.19850 -17.07623 -16.72872 -16.36123 -16.13331 -15.89106 -15.43173 -15.15298 -14.56633 -14.26006 -14.09333 -13.88998 -13.77852 -13.64607 -13.31586 -12.93146 -12.75843 -12.61783 -12.43140 -12.30456 -12.14159 -11.99456 -11.66855 -11.62926 -11.41382 -11.03357 -10.73341 -10.58743 -9.79777 -9.16526 -8.34287 -6.48569 0.89201 1.31116 1.37696 1.38465 1.41323 1.50909 2.16843 2.26522 2.39079 2.97712 2.99208 3.24541 3.48540 3.79651 3.93640 4.01477 4.20643 4.23336 4.31451 4.53441 4.63222 4.70090 4.77497 4.83696 4.85403 4.87585 4.91339 4.96110 5.00698 5.07309 5.21092 5.24344 5.55344 5.76806 5.78912 5.88617 6.19535 6.26255 6.62955 6.94502 7.06603 7.21526 8.73634 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.003527 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.500489 B = 7935.843802 C = 8324.450324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.530 3.470 4 O -0.544 6.544 5 N -0.622 5.622 6 C 0.263 3.737 7 C -0.296 4.296 8 C 0.057 3.943 9 N -0.343 5.343 10 C 0.272 3.728 11 C -0.548 4.548 12 H 0.053 0.947 13 C 0.018 3.982 14 N -0.921 5.921 15 Si 0.973 3.027 16 H -0.272 1.272 17 H -0.272 1.272 18 H -0.272 1.272 19 N -0.343 5.343 20 C -0.143 4.143 21 C 0.043 3.957 22 O -0.401 6.401 23 C 0.055 3.945 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.423 0.577 28 H 0.165 0.835 29 H 0.201 0.799 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.273 0.727 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -21.592 -7.823 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 C 0.318 3.682 4 O -0.419 6.419 5 N -0.271 5.271 6 C 0.009 3.991 7 C -0.327 4.327 8 C -0.092 4.092 9 N -0.125 5.125 10 C 0.153 3.847 11 C -0.586 4.586 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.560 5.560 15 Si 0.797 3.203 16 H -0.197 1.197 17 H -0.197 1.197 18 H -0.197 1.197 19 N -0.174 5.174 20 C -0.180 4.180 21 C -0.033 4.033 22 O -0.321 6.321 23 C -0.022 4.022 24 H 0.124 0.876 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.261 0.739 28 H 0.182 0.818 29 H 0.218 0.782 30 H 0.039 0.961 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.744 -20.822 -7.122 22.177 hybrid contribution -0.443 0.664 -0.150 0.812 sum -3.187 -20.158 -7.273 21.666 Atomic orbital electron populations 1.21925 0.88522 1.05434 1.03523 1.22211 0.99766 0.89148 0.99518 1.21154 0.79650 0.87685 0.79733 1.90588 1.36337 1.77755 1.37220 1.42598 1.48786 1.06837 1.28907 1.19487 0.97394 0.86835 0.95420 1.21697 1.10221 0.94929 1.05849 1.23163 0.98348 0.98118 0.89541 1.48858 1.33876 1.09781 1.19941 1.19356 0.98322 0.75505 0.91486 1.21399 0.92105 1.06978 1.38167 0.92875 1.25760 1.02419 0.95846 0.94209 1.70001 1.33395 1.15022 1.37543 0.85322 0.78633 0.77613 0.78703 1.19709 1.19713 1.19657 1.77247 1.22511 0.93004 1.24632 1.23117 1.01630 0.96834 0.96459 1.23630 1.00351 0.96520 0.82771 1.89204 1.36303 1.73975 1.32582 1.23751 0.88719 0.95512 0.94249 0.87616 0.91033 0.91675 0.73918 0.81766 0.78177 0.96052 0.92363 0.91806 0.90746 0.86826 0.89135 0.88681 0.89661 0.87049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.21 71.98 0.59 -0.97 16 2 C -0.10 -1.81 0.90 -51.91 -0.05 -1.86 16 3 C 0.53 14.91 6.44 87.66 0.56 15.47 16 4 O -0.54 -19.09 12.41 -3.06 -0.04 -19.13 16 5 N -0.62 -18.93 5.15 -307.51 -1.58 -20.52 16 6 C 0.26 10.67 8.11 133.32 1.08 11.75 16 7 C -0.30 -11.90 9.60 22.11 0.21 -11.69 16 8 C 0.06 2.30 11.44 83.52 0.96 3.25 16 9 N -0.34 -16.32 3.67 -351.84 -1.29 -17.61 16 10 C 0.27 14.23 6.26 85.64 0.54 14.77 16 11 C -0.55 -31.03 9.23 25.60 0.24 -30.80 16 12 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 13 C 0.02 1.00 5.46 84.65 0.46 1.46 16 14 N -0.92 -52.29 13.29 21.45 0.28 -52.01 16 15 Si 0.97 43.46 29.54 68.60 2.03 45.48 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 N -0.34 -16.10 12.42 -54.45 -0.68 -16.78 16 20 C -0.14 -2.30 6.32 31.61 0.20 -2.10 16 21 C 0.04 0.64 7.62 72.49 0.55 1.19 16 22 O -0.40 -8.71 11.67 -148.98 -1.74 -10.45 16 23 C 0.05 0.90 6.73 72.48 0.49 1.38 16 24 H 0.11 0.58 8.08 -2.39 -0.02 0.56 16 25 H 0.07 0.77 7.44 -2.39 -0.02 0.76 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.42 10.27 8.12 -92.71 -0.75 9.51 16 28 H 0.17 6.43 5.92 -2.91 -0.02 6.41 16 29 H 0.20 6.40 8.06 -2.91 -0.02 6.38 16 30 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 2.98 8.07 -2.38 -0.02 2.96 16 32 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 33 H 0.07 1.66 6.50 -2.38 -0.02 1.64 16 34 H 0.11 1.15 7.73 -2.39 -0.02 1.13 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.55 7.72 -2.39 -0.02 1.54 16 38 H 0.11 1.05 7.82 -2.39 -0.02 1.04 16 Total: -1.00 -72.74 319.93 3.14 -69.59 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.33 Total: 19.53 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.83 Total: 1.88 kcal Atomic # 7 Polarization: -103.64 SS G_CDS: -3.27 Total: -106.91 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -1.78 Total: -29.58 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -72.74 3.14 -69.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330858633.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.272 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds