Wall clock time and date at job start Tue Mar 31 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.39865 * 126.04221 * 2 1 4 4 N 1.30838 * 108.20452 * 180.02562 * 3 2 1 5 5 N 1.40079 * 108.20615 * 0.02562 * 4 3 2 6 6 C 1.46505 * 126.03666 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47136 * 305.02700 * 6 5 4 8 8 H 1.08994 * 109.56067 * 54.87024 * 7 6 5 9 9 C 1.53295 * 109.51203 * 175.00263 * 7 6 5 10 10 N 1.47158 * 108.38578 * 172.22658 * 9 7 6 11 11 C 1.34766 * 120.98504 * 129.19125 * 10 9 7 12 12 O 1.21693 * 120.00321 * 174.71949 * 11 10 9 13 13 C 1.46381 * 120.00012 * 354.71578 * 11 10 9 14 14 H 1.08004 * 119.99817 * 352.49322 * 13 11 10 15 15 C 1.40050 * 119.99984 * 172.49192 * 13 11 10 16 16 N 1.30665 * 120.00013 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99732 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47270 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47036 * 120.00094 * 17 15 13 20 20 H 1.48507 * 109.46987 * 239.99852 * 17 15 13 21 21 C 1.47155 * 118.02980 * 309.46281 * 10 9 7 22 22 C 1.53291 * 108.38828 * 50.53661 * 21 10 9 23 23 O 1.42957 * 109.22054 * 307.69726 * 22 21 10 24 24 C 1.34950 * 107.92637 * 0.26070 * 5 4 3 25 25 H 1.09001 * 109.47443 * 89.97405 * 1 2 3 26 26 H 1.09002 * 109.47274 * 209.97262 * 1 2 3 27 27 H 1.09001 * 109.47673 * 329.97123 * 1 2 3 28 28 H 1.08003 * 125.89940 * 0.02562 * 3 2 1 29 29 H 1.08996 * 109.46870 * 185.02334 * 6 5 4 30 30 H 1.09007 * 109.46781 * 65.02657 * 6 5 4 31 31 H 1.09000 * 109.68649 * 52.50246 * 9 7 6 32 32 H 1.09005 * 109.71151 * 291.96480 * 9 7 6 33 33 H 0.97009 * 120.00177 * 180.02562 * 16 15 13 34 34 H 1.09000 * 109.67577 * 170.26501 * 21 10 9 35 35 H 1.09001 * 109.68124 * 290.80680 * 21 10 9 36 36 H 1.08996 * 109.51322 * 187.77215 * 22 21 10 37 37 H 1.08997 * 109.51178 * 67.62015 * 22 21 10 38 38 H 1.08001 * 126.12571 * 179.73107 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3298 1.1309 0.0000 4 7 3.5753 0.7301 -0.0006 5 7 3.5843 -0.6706 -0.0015 6 6 4.7745 -1.5249 -0.0029 7 6 5.6708 -1.1488 -1.1844 8 1 5.8991 -0.0838 -1.1448 9 6 6.9731 -1.9546 -1.1160 10 7 7.7317 -1.7168 -2.3544 11 6 9.0284 -1.3520 -2.3144 12 8 9.6649 -1.2533 -3.3469 13 6 9.6713 -1.0743 -1.0290 14 1 9.0806 -1.0427 -0.1254 15 6 11.0525 -0.8495 -0.9709 16 7 11.7671 -0.8872 -2.0642 17 14 11.8730 -0.4959 0.6695 18 1 10.8511 -0.5079 1.7469 19 1 12.8964 -1.5359 0.9455 20 1 12.5237 0.8381 0.6201 21 6 7.0307 -1.8832 -3.6375 22 6 5.7256 -1.0809 -3.5831 23 8 4.9966 -1.4473 -2.4093 24 6 2.3030 -1.0942 -0.0074 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3634 -0.8902 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 1.9950 2.1578 0.0004 29 1 4.4727 -2.5683 -0.0934 30 1 5.3233 -1.3848 0.9285 31 1 6.7436 -3.0162 -1.0243 32 1 7.5612 -1.6306 -0.2573 33 1 12.7238 -0.7319 -2.0240 34 1 7.6568 -1.5114 -4.4486 35 1 6.8071 -2.9376 -3.7996 36 1 5.1265 -1.2999 -4.4670 37 1 5.9541 -0.0156 -3.5521 38 1 1.9724 -2.1223 -0.0136 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331057985.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:28 Heat of formation + Delta-G solvation = 2.644101 kcal Electronic energy + Delta-G solvation = -21861.260306 eV Core-core repulsion = 18512.904800 eV Total energy + Delta-G solvation = -3348.355507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13022 -39.20375 -36.79965 -34.20118 -33.46075 -32.56087 -31.76591 -30.86588 -28.43919 -26.70181 -25.97187 -24.87516 -22.94957 -21.52573 -20.65802 -19.97605 -19.16612 -17.14843 -16.48309 -16.27644 -15.90809 -15.31234 -14.80504 -14.55468 -14.45385 -14.14227 -13.82418 -13.58253 -13.40835 -13.05761 -13.04711 -12.47292 -12.28987 -11.98226 -11.85856 -11.70423 -11.51750 -11.22019 -11.06136 -10.93883 -10.47904 -10.31050 -10.29552 -10.09085 -9.56992 -9.33189 -8.93855 -8.26402 -7.70536 -7.34064 -6.29298 -4.74661 1.98899 2.56897 2.85647 3.07671 3.16119 3.19897 3.82734 3.99216 4.29432 4.46843 4.60734 4.85800 5.00315 5.08562 5.24535 5.24741 5.36261 5.44087 5.47077 5.58698 5.61231 5.63909 5.81285 5.86296 5.91085 5.96755 6.02204 6.15072 6.22879 6.33364 6.49605 6.73107 7.08443 7.35294 7.37495 7.43081 7.79933 7.99008 8.21820 8.92822 9.28550 10.46211 10.64824 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.023639 B = 0.004341 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.204361 B = 6448.827429 C = 7249.843735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.253 4.253 3 C 0.042 3.958 4 N -0.288 5.288 5 N -0.358 5.358 6 C 0.143 3.857 7 C 0.064 3.936 8 H 0.076 0.924 9 C 0.099 3.901 10 N -0.643 5.643 11 C 0.560 3.440 12 O -0.574 6.574 13 C -0.544 4.544 14 H 0.073 0.927 15 C 0.088 3.912 16 N -0.767 5.767 17 Si 0.908 3.092 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C 0.086 3.914 22 C 0.054 3.946 23 O -0.383 6.383 24 C 0.060 3.940 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.178 0.822 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.053 0.947 32 H 0.104 0.896 33 H 0.269 0.731 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.236 -1.288 5.632 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.264 4.264 3 C -0.144 4.144 4 N -0.110 5.110 5 N -0.139 5.139 6 C 0.022 3.978 7 C 0.004 3.996 8 H 0.094 0.906 9 C -0.026 4.026 10 N -0.382 5.382 11 C 0.367 3.633 12 O -0.457 6.457 13 C -0.581 4.581 14 H 0.091 0.909 15 C -0.132 4.132 16 N -0.395 5.395 17 Si 0.732 3.268 18 H -0.187 1.187 19 H -0.201 1.201 20 H -0.200 1.200 21 C -0.038 4.038 22 C -0.023 4.023 23 O -0.302 6.302 24 C -0.086 4.086 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.195 0.805 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.466 -1.042 4.953 17.226 hybrid contribution -0.226 -0.045 0.726 0.762 sum -16.692 -1.088 5.679 17.665 Atomic orbital electron populations 1.19995 0.89664 1.01725 1.01253 1.20072 0.96869 0.91984 1.17503 1.23732 0.90094 0.99620 1.00921 1.77366 1.21139 0.88976 1.23484 1.48499 1.05292 1.04613 1.55524 1.21810 0.83975 0.93118 0.98928 1.22844 0.91959 1.00646 0.84160 0.90583 1.21977 0.91397 0.98054 0.91215 1.48273 1.11839 1.75084 1.03035 1.18302 0.77828 0.76314 0.90888 1.90599 1.61791 1.57191 1.36071 1.20956 0.92902 1.51524 0.92688 0.90876 1.25731 0.97415 0.92773 0.97324 1.70009 1.06722 1.34901 1.27897 0.86311 0.79570 0.78532 0.82371 1.18670 1.20070 1.20037 1.21821 0.93041 0.98742 0.90213 1.22952 0.93411 0.98621 0.87343 1.87816 1.44511 1.84329 1.13578 1.22284 0.84268 0.99866 1.02225 0.92420 0.92464 0.92177 0.80515 0.87823 0.87901 0.92885 0.87785 0.91982 0.89003 0.93101 0.88883 0.93178 0.81376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.37 36.00 0.37 -0.19 16 2 C -0.25 -2.90 6.10 -105.06 -0.64 -3.54 16 3 C 0.04 0.55 11.96 -17.37 -0.21 0.34 16 4 N -0.29 -4.51 12.34 30.62 0.38 -4.13 16 5 N -0.36 -4.96 3.63 -61.36 -0.22 -5.18 16 6 C 0.14 1.81 6.18 -4.04 -0.02 1.78 16 7 C 0.06 1.03 2.90 -26.58 -0.08 0.95 16 8 H 0.08 1.43 8.05 -51.93 -0.42 1.01 16 9 C 0.10 1.80 5.85 -3.53 -0.02 1.78 16 10 N -0.64 -14.62 3.02 -173.93 -0.53 -15.14 16 11 C 0.56 15.82 7.62 -12.99 -0.10 15.72 16 12 O -0.57 -18.48 14.56 5.20 0.08 -18.40 16 13 C -0.54 -14.96 8.86 -35.63 -0.32 -15.28 16 14 H 0.07 1.82 5.73 -52.48 -0.30 1.52 16 15 C 0.09 2.40 5.50 -17.37 -0.10 2.31 16 16 N -0.77 -22.68 11.86 55.55 0.66 -22.03 16 17 Si 0.91 19.72 29.56 -169.99 -5.02 14.70 16 18 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 19 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.09 1.70 6.62 -3.53 -0.02 1.68 16 22 C 0.05 0.92 6.98 37.31 0.26 1.18 16 23 O -0.38 -6.52 10.33 -35.23 -0.36 -6.88 16 24 C 0.06 0.71 11.36 -17.22 -0.20 0.51 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.18 1.75 8.06 -52.48 -0.42 1.32 16 29 H 0.10 1.04 8.07 -51.93 -0.42 0.62 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.92 5.41 -51.93 -0.28 1.64 16 33 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 34 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -35.96 320.83 -6.41 -42.37 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.15 Total: 2.63 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -1.07 Total: 7.24 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.29 Total: -46.49 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.29 Total: -25.28 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.96 -6.41 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331057985.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.015 kcal (2) G-P(sol) polarization free energy of solvation -35.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds