Wall clock time and date at job start Tue Mar 31 2020 02:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30523 * 119.70371 * 2 1 4 4 N 1.28267 * 122.98673 * 179.97438 * 3 2 1 5 5 C 1.46500 * 119.03344 * 179.97438 * 4 3 2 6 6 C 1.34684 * 121.93821 * 0.02562 * 4 3 2 7 7 O 1.21896 * 120.46909 * 179.97438 * 6 4 3 8 8 C 1.42323 * 119.06161 * 359.97438 * 6 4 3 9 9 C 1.47410 * 121.29897 * 179.97438 * 8 6 4 10 10 O 1.21606 * 119.99892 * 185.19665 * 9 8 6 11 11 N 1.34770 * 120.00040 * 4.91919 * 9 8 6 12 12 C 1.46504 * 120.00004 * 175.25718 * 11 9 8 13 13 C 1.53003 * 109.47083 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.47215 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99927 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99886 * 180.02562 * 14 13 12 17 17 N 1.31517 * 119.99926 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99659 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47614 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47283 * 120.00368 * 18 16 14 21 21 H 1.48506 * 109.46981 * 240.00040 * 18 16 14 22 22 C 1.39313 * 117.40188 * 0.24896 * 8 6 4 23 23 C 1.50703 * 120.99082 * 179.72596 * 22 8 6 24 24 H 1.08998 * 109.46668 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46475 * 119.99979 * 1 2 3 26 26 H 1.08995 * 109.47266 * 239.99862 * 1 2 3 27 27 H 1.09005 * 109.46942 * 270.02522 * 5 4 3 28 28 H 1.09005 * 109.47364 * 30.01945 * 5 4 3 29 29 H 1.08995 * 109.47603 * 150.02156 * 5 4 3 30 30 H 0.96999 * 120.00238 * 355.26533 * 11 9 8 31 31 H 1.08996 * 109.47327 * 300.00376 * 12 11 9 32 32 H 1.09006 * 109.47017 * 60.00776 * 12 11 9 33 33 H 1.09001 * 109.47547 * 300.00647 * 13 12 11 34 34 H 1.08998 * 109.46740 * 60.00060 * 13 12 11 35 35 H 0.96998 * 119.99422 * 179.97438 * 17 16 14 36 36 H 1.09005 * 109.47058 * 84.34448 * 23 22 8 37 37 H 1.09001 * 109.47258 * 204.34016 * 23 22 8 38 38 H 1.08994 * 109.47190 * 324.34149 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1538 1.1337 0.0000 4 7 3.4344 1.2072 0.0005 5 6 4.0708 2.5267 -0.0001 6 6 4.2111 0.1069 0.0005 7 8 5.4259 0.2079 0.0005 8 6 3.5935 -1.1754 0.0006 9 6 4.3961 -2.4119 0.0000 10 8 3.8472 -3.4929 -0.0953 11 7 5.7384 -2.3441 0.0996 12 6 6.5282 -3.5736 0.2038 13 6 8.0131 -3.2188 0.3045 14 6 8.8257 -4.4836 0.4110 15 1 8.3323 -5.4443 0.4069 16 6 10.1989 -4.4141 0.5138 17 7 10.7995 -3.2441 0.5194 18 14 11.2060 -5.9818 0.6452 19 1 10.2987 -7.1570 0.6169 20 1 12.1527 -6.0591 -0.4964 21 1 11.9675 -5.9756 1.9201 22 6 2.2010 -1.2163 -0.0048 23 6 1.4634 -2.5305 -0.0114 24 1 -0.3632 1.0277 -0.0005 25 1 -0.3632 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8899 27 1 4.2287 2.8534 -1.0280 28 1 3.4270 3.2409 0.5133 29 1 5.0302 2.4676 0.5138 30 1 6.1816 -1.4813 0.1024 31 1 6.2257 -4.1255 1.0937 32 1 6.3605 -4.1891 -0.6801 33 1 8.3160 -2.6666 -0.5852 34 1 8.1804 -2.6035 1.1885 35 1 11.7655 -3.1953 0.5921 36 1 1.3700 -2.8998 1.0100 37 1 0.4707 -2.3878 -0.4382 38 1 2.0159 -3.2543 -0.6104 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342633944.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:26:37 Heat of formation + Delta-G solvation = -39.107924 kcal Electronic energy + Delta-G solvation = -21597.091406 eV Core-core repulsion = 18246.925396 eV Total energy + Delta-G solvation = -3350.166010 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.33210 -40.67052 -39.38098 -37.06033 -36.50901 -34.84137 -33.44496 -32.04528 -31.15831 -29.08178 -27.65103 -26.84760 -25.29888 -23.39481 -22.87806 -21.99156 -19.96862 -18.63189 -18.51509 -18.01076 -17.67630 -17.04901 -16.48812 -16.48411 -16.32213 -15.21142 -15.11355 -14.98814 -14.88289 -14.37945 -14.37154 -14.05800 -13.77474 -13.62976 -13.42749 -13.22399 -12.97087 -12.90988 -12.80131 -12.50675 -12.48046 -12.30965 -11.69601 -11.46161 -11.18704 -10.99759 -10.67744 -10.64743 -10.04679 -9.63568 -8.26145 -6.39019 -1.03883 0.35598 1.04567 1.39601 1.40641 1.50487 1.54915 2.17959 2.34298 2.42098 2.78077 3.07509 3.28157 3.49797 3.64481 4.00626 4.28847 4.30229 4.32848 4.41978 4.42861 4.47783 4.66951 4.72435 4.76052 4.78028 4.86985 4.97240 5.03857 5.17742 5.33278 5.42323 5.48874 5.54857 5.74297 6.10217 6.25864 6.59674 6.74558 6.91323 7.16891 7.30689 8.86766 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.028646 B = 0.003774 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.217355 B = 7418.154970 C = 8351.697034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.058 3.942 3 N -0.203 5.203 4 N -0.341 5.341 5 C 0.073 3.927 6 C 0.483 3.517 7 O -0.560 6.560 8 C -0.271 4.271 9 C 0.564 3.436 10 O -0.563 6.563 11 N -0.715 5.715 12 C 0.139 3.861 13 C 0.023 3.977 14 C -0.545 4.545 15 H 0.066 0.934 16 C 0.001 3.999 17 N -0.931 5.931 18 Si 0.976 3.024 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.275 1.275 22 C 0.068 3.932 23 C -0.136 4.136 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.410 0.590 31 H 0.055 0.945 32 H 0.053 0.947 33 H -0.002 1.002 34 H -0.001 1.001 35 H 0.266 0.734 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.289 11.349 -0.898 27.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 N -0.028 5.028 4 N -0.159 5.159 5 C -0.066 4.066 6 C 0.283 3.717 7 O -0.441 6.441 8 C -0.285 4.285 9 C 0.352 3.648 10 O -0.446 6.446 11 N -0.373 5.373 12 C 0.016 3.984 13 C -0.015 4.015 14 C -0.584 4.584 15 H 0.084 0.916 16 C -0.197 4.197 17 N -0.570 5.570 18 Si 0.799 3.201 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.201 1.201 22 C 0.059 3.941 23 C -0.192 4.192 24 H 0.113 0.887 25 H 0.126 0.874 26 H 0.125 0.875 27 H 0.114 0.886 28 H 0.145 0.855 29 H 0.110 0.890 30 H 0.254 0.746 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.016 0.984 34 H 0.017 0.983 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.803 11.758 -0.937 27.465 hybrid contribution 1.908 -0.848 0.061 2.089 sum -22.895 10.910 -0.876 25.376 Atomic orbital electron populations 1.20846 0.81833 1.06038 1.05688 1.22560 1.00223 0.85251 1.03036 1.70805 0.94098 1.29301 1.08636 1.46715 1.02348 1.10149 1.56690 1.22485 0.99571 0.78675 1.05829 1.18033 0.87905 0.85885 0.79852 1.90729 1.13699 1.85649 1.54054 1.21368 0.95747 0.92799 1.18624 1.17799 0.82240 0.88025 0.76731 1.90644 1.71463 1.29761 1.52709 1.46796 1.06629 1.12121 1.71762 1.21314 0.91388 0.85553 1.00175 1.19120 0.89919 0.96836 0.95596 1.21486 0.92417 0.93182 1.51277 0.91604 1.26040 0.99228 1.00199 0.94265 1.70122 1.10106 1.26045 1.50745 0.85243 0.78190 0.78722 0.77934 1.18452 1.20115 1.20076 1.22071 0.90993 0.99491 0.81496 1.21434 1.01350 0.91225 1.05190 0.88708 0.87444 0.87514 0.88615 0.85547 0.89034 0.74589 0.92686 0.92828 0.98362 0.98264 0.92501 0.88051 0.86070 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.46 8.95 71.24 0.64 0.18 16 2 C 0.06 0.94 6.87 43.19 0.30 1.24 16 3 N -0.20 -3.85 10.74 -47.43 -0.51 -4.36 16 4 N -0.34 -8.06 3.62 -493.00 -1.78 -9.85 16 5 C 0.07 1.20 10.58 127.77 1.35 2.55 16 6 C 0.48 15.67 7.50 85.27 0.64 16.31 16 7 O -0.56 -21.98 13.41 -4.98 -0.07 -22.05 16 8 C -0.27 -8.75 5.95 -19.59 -0.12 -8.87 16 9 C 0.56 22.75 7.74 86.66 0.67 23.42 16 10 O -0.56 -23.47 13.49 -4.05 -0.05 -23.52 16 11 N -0.72 -32.36 5.48 -466.38 -2.56 -34.91 16 12 C 0.14 6.86 5.62 86.38 0.49 7.35 16 13 C 0.02 1.31 5.09 29.85 0.15 1.46 16 14 C -0.55 -32.60 9.11 25.60 0.23 -32.37 16 15 H 0.07 3.77 7.74 -2.91 -0.02 3.75 16 16 C 0.00 0.06 5.46 84.66 0.46 0.52 16 17 N -0.93 -58.27 13.29 21.45 0.28 -57.98 16 18 Si 0.98 45.51 29.54 68.60 2.03 47.54 16 19 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.07 1.51 5.98 -19.17 -0.11 1.39 16 23 C -0.14 -2.40 8.78 71.24 0.63 -1.77 16 24 H 0.09 0.36 8.10 -2.39 -0.02 0.34 16 25 H 0.11 0.19 7.57 -2.39 -0.02 0.17 16 26 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 27 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.13 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.09 1.76 7.36 -2.39 -0.02 1.74 16 30 H 0.41 19.07 5.20 -92.71 -0.48 18.59 16 31 H 0.05 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.05 2.65 8.14 -2.38 -0.02 2.63 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.12 0.98 6.60 -2.39 -0.02 0.97 16 38 H 0.09 2.21 5.66 -2.39 -0.01 2.20 16 Total: -1.00 -79.40 320.20 3.27 -76.13 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.61 Total: 17.60 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: 5.32 Total: 11.41 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -4.57 Total: -107.10 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -0.12 Total: -45.57 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -79.40 3.27 -76.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342633944.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.022 kcal (2) G-P(sol) polarization free energy of solvation -79.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds