Wall clock time and date at job start Tue Mar 31 2020 01:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36369 * 120.37360 * 2 1 4 4 C 1.40501 * 119.39421 * 180.27137 * 3 2 1 5 5 O 1.22096 * 119.92215 * 179.73857 * 4 3 2 6 6 N 1.34632 * 120.14962 * 359.72122 * 4 3 2 7 7 C 1.46504 * 119.60908 * 180.02562 * 6 4 3 8 8 C 1.35964 * 120.78183 * 0.02562 * 6 4 3 9 9 C 1.35865 * 120.59912 * 359.97438 * 8 6 4 10 10 N 1.40450 * 120.09114 * 179.97438 * 9 8 6 11 11 C 1.34768 * 119.99909 * 119.73310 * 10 9 8 12 12 O 1.21595 * 120.00304 * 354.92487 * 11 10 9 13 13 N 1.34777 * 119.99871 * 174.92303 * 11 10 9 14 14 C 1.46508 * 119.99950 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.46700 * 179.72400 * 14 13 11 16 16 C 1.50706 * 109.46614 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99858 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99617 * 179.97438 * 16 15 14 19 19 N 1.31509 * 120.00312 * 0.02562 * 18 16 15 20 20 Si 1.86810 * 119.99822 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46884 * 60.00224 * 20 18 16 22 22 H 1.48497 * 109.47064 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47038 * 300.00397 * 20 18 16 24 24 H 1.09008 * 109.47178 * 270.25522 * 1 2 3 25 25 H 1.09002 * 109.47494 * 30.25877 * 1 2 3 26 26 H 1.09002 * 109.46929 * 150.26358 * 1 2 3 27 27 H 1.07997 * 120.30126 * 359.97438 * 3 2 1 28 28 H 1.08997 * 109.46913 * 269.97566 * 7 6 4 29 29 H 1.09006 * 109.46973 * 29.97265 * 7 6 4 30 30 H 1.08993 * 109.47214 * 149.97203 * 7 6 4 31 31 H 1.08003 * 119.70452 * 180.02562 * 8 6 4 32 32 H 0.96998 * 119.99816 * 299.74355 * 10 9 8 33 33 H 0.97004 * 120.00507 * 359.72501 * 13 11 10 34 34 H 1.08999 * 109.46763 * 299.72369 * 14 13 11 35 35 H 1.08997 * 109.47215 * 59.72856 * 14 13 11 36 36 H 1.08999 * 109.47487 * 299.99525 * 15 14 13 37 37 H 1.09002 * 109.47337 * 60.00142 * 15 14 13 38 38 H 0.97003 * 120.00060 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1765 0.0000 4 6 3.6013 1.1525 -0.0058 5 8 4.2283 2.2001 -0.0107 6 7 4.2575 -0.0231 -0.0056 7 6 5.7225 -0.0343 -0.0111 8 6 3.5767 -1.2000 -0.0004 9 6 2.2181 -1.2131 0.0053 10 7 1.5257 -2.4350 0.0101 11 6 0.6941 -2.7342 1.0275 12 8 0.6129 -1.9898 1.9855 13 7 -0.0476 -3.8587 0.9832 14 6 -0.9521 -4.1837 2.0889 15 6 -1.6745 -5.4982 1.7872 16 6 -2.6044 -5.8329 2.9250 17 1 -2.6729 -5.1741 3.7780 18 6 -3.3677 -6.9800 2.8767 19 7 -3.2840 -7.7824 1.8382 20 14 -4.5199 -7.3953 4.2874 21 1 -5.5175 -6.3071 4.4484 22 1 -5.2212 -8.6710 3.9945 23 1 -3.7364 -7.5380 5.5407 24 1 -0.3634 0.0046 1.0277 25 1 -0.3634 0.8876 -0.5178 26 1 -0.3633 -0.8924 -0.5097 27 1 1.6676 2.1181 -0.0004 28 1 6.0819 -0.0398 -1.0401 29 1 6.0945 0.8544 0.4989 30 1 6.0809 -0.9255 0.5037 31 1 4.1208 -2.1330 0.0001 32 1 1.6461 -3.0635 -0.7188 33 1 0.0141 -4.4506 0.2171 34 1 -0.3777 -4.2877 3.0095 35 1 -1.6846 -3.3851 2.2059 36 1 -2.2489 -5.3942 0.8667 37 1 -0.9420 -6.2969 1.6702 38 1 -3.8213 -8.5893 1.8041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345274913.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:24 Heat of formation + Delta-G solvation = -59.492198 kcal Electronic energy + Delta-G solvation = -21107.744616 eV Core-core repulsion = 17756.694677 eV Total energy + Delta-G solvation = -3351.049939 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.53367 -41.04449 -38.37890 -36.87511 -36.25805 -35.09667 -34.63014 -31.64829 -30.80469 -29.53182 -27.19848 -26.59649 -24.63475 -23.24866 -22.60052 -21.79476 -19.75865 -18.88489 -18.65626 -18.34375 -17.51431 -17.03427 -16.51084 -16.47865 -16.34670 -15.58024 -15.22318 -15.13906 -14.95844 -14.51657 -14.27314 -14.19195 -14.06402 -13.46259 -13.30189 -13.17798 -12.91622 -12.84303 -12.51625 -12.48455 -12.18020 -11.64653 -11.47921 -11.22233 -11.17154 -10.87242 -10.57618 -10.51564 -9.88127 -8.84130 -8.21405 -6.30856 -0.22263 0.63047 1.41088 1.45267 1.45813 1.53942 1.93558 2.17089 2.43482 2.54470 3.13970 3.30860 3.62429 3.68795 3.81406 4.05584 4.34818 4.45417 4.46344 4.53814 4.58315 4.68195 4.75991 4.79491 4.84367 4.93159 5.10733 5.18586 5.34122 5.39627 5.54913 5.65390 5.69943 5.82656 5.96492 6.02794 6.20957 6.82787 6.91048 7.12625 7.38459 7.62430 8.90053 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.043295 B = 0.002911 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.577376 B = 9615.985605 C = 9852.271404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.033 3.967 3 C -0.267 4.267 4 C 0.503 3.497 5 O -0.602 6.602 6 N -0.490 5.490 7 C 0.054 3.946 8 C 0.146 3.854 9 C 0.040 3.960 10 N -0.666 5.666 11 C 0.703 3.297 12 O -0.621 6.621 13 N -0.727 5.727 14 C 0.162 3.838 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.058 0.942 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.960 3.040 21 H -0.269 1.269 22 H -0.282 1.282 23 H -0.269 1.269 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.150 0.850 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.121 0.879 31 H 0.212 0.788 32 H 0.424 0.576 33 H 0.409 0.591 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.010 0.990 37 H 0.010 0.990 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.384 9.505 -8.865 20.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.028 3.972 3 C -0.289 4.289 4 C 0.308 3.692 5 O -0.489 6.489 6 N -0.199 5.199 7 C -0.086 4.086 8 C 0.016 3.984 9 C -0.058 4.058 10 N -0.320 5.320 11 C 0.403 3.597 12 O -0.500 6.500 13 N -0.382 5.382 14 C 0.038 3.962 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.077 0.923 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.785 3.215 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.194 1.194 24 H 0.089 0.911 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.168 0.832 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.140 0.860 31 H 0.229 0.771 32 H 0.264 0.736 33 H 0.245 0.755 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.028 0.972 37 H 0.029 0.971 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 15.655 10.629 -8.067 20.570 hybrid contribution -0.840 -0.864 0.047 1.206 sum 14.815 9.765 -8.020 19.472 Atomic orbital electron populations 1.20886 0.89971 1.03700 1.02895 1.20477 0.97530 0.92107 0.87106 1.21807 0.92328 0.99540 1.15223 1.17228 0.89543 0.83056 0.79415 1.90916 1.70127 1.31595 1.56299 1.45337 1.10659 1.05788 1.58125 1.22454 0.74667 1.06051 1.05379 1.22339 0.91931 0.90982 0.93133 1.16358 0.89824 0.85285 1.14333 1.41913 1.46426 1.18847 1.24838 1.16071 0.79326 0.81612 0.82670 1.90914 1.71469 1.52346 1.35312 1.45155 1.44341 1.24077 1.24623 1.21069 0.90369 0.97155 0.87651 1.19122 0.94495 0.91317 0.96421 1.21460 1.24086 1.07566 1.05378 0.92349 1.25806 0.98587 0.96059 0.98513 1.70035 1.41791 1.13701 1.31010 0.85573 0.78926 0.77552 0.79454 1.19452 1.20736 1.19426 0.91143 0.89279 0.91172 0.83249 0.88773 0.90367 0.86020 0.77127 0.73644 0.75481 0.93741 0.93700 0.97181 0.97133 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.52 71.23 0.61 -2.18 16 2 C 0.03 0.79 5.55 -19.72 -0.11 0.68 16 3 C -0.27 -6.77 9.64 22.39 0.22 -6.56 16 4 C 0.50 13.39 7.40 84.82 0.63 14.01 16 5 O -0.60 -20.19 16.63 -5.63 -0.09 -20.29 16 6 N -0.49 -8.79 2.99 -673.85 -2.01 -10.80 16 7 C 0.05 0.58 10.36 127.77 1.32 1.90 16 8 C 0.15 2.09 10.20 83.50 0.85 2.94 16 9 C 0.04 0.80 5.61 37.79 0.21 1.01 16 10 N -0.67 -12.62 4.76 -317.64 -1.51 -14.14 16 11 C 0.70 20.46 7.15 179.06 1.28 21.74 16 12 O -0.62 -23.66 14.52 -4.01 -0.06 -23.72 16 13 N -0.73 -21.84 5.56 -478.52 -2.66 -24.50 16 14 C 0.16 6.43 5.61 86.38 0.48 6.92 16 15 C 0.02 1.14 5.09 29.85 0.15 1.29 16 16 C -0.55 -29.43 9.11 25.60 0.23 -29.20 16 17 H 0.06 3.08 7.74 -2.91 -0.02 3.06 16 18 C 0.01 0.50 5.46 84.66 0.46 0.96 16 19 N -0.93 -52.70 13.29 21.45 0.28 -52.42 16 20 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H 0.07 2.04 7.30 -2.38 -0.02 2.02 16 25 H 0.09 1.70 8.09 -2.39 -0.02 1.69 16 26 H 0.07 1.63 7.07 -2.39 -0.02 1.61 16 27 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 28 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 1.16 7.38 -2.38 -0.02 1.15 16 30 H 0.12 0.42 8.01 -2.39 -0.02 0.40 16 31 H 0.21 1.04 8.04 -2.91 -0.02 1.01 16 32 H 0.42 4.72 8.84 -92.71 -0.82 3.90 16 33 H 0.41 9.92 8.49 -92.71 -0.79 9.14 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -76.41 326.38 1.80 -74.61 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.51 Total: 13.17 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 6.34 Total: 13.52 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -5.90 Total: -101.86 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -0.15 Total: -44.01 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -76.41 1.80 -74.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345274913.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.119 kcal (2) G-P(sol) polarization free energy of solvation -76.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds