Wall clock time and date at job start Tue Mar 31 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35311 * 126.13316 * 2 1 4 4 C 1.50704 * 126.03586 * 0.02562 * 3 2 1 5 5 C 1.50703 * 109.47469 * 84.71495 * 4 3 2 6 6 O 1.21276 * 119.99655 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99851 * 179.97438 * 5 4 3 8 8 C 1.47585 * 134.48714 * 179.97438 * 7 5 4 9 9 C 1.53946 * 86.11303 * 155.35829 * 8 7 5 10 10 O 1.42897 * 113.74194 * 269.15036 * 9 8 7 11 11 C 1.50705 * 113.74193 * 137.95267 * 9 8 7 12 12 H 1.08000 * 119.99753 * 17.18899 * 11 9 8 13 13 C 1.37873 * 119.99893 * 197.19270 * 11 9 8 14 14 N 1.31512 * 119.99488 * 194.35249 * 13 11 9 15 15 Si 1.86797 * 120.00211 * 14.35029 * 13 11 9 16 16 H 1.48498 * 109.46923 * 180.02562 * 15 13 11 17 17 H 1.48497 * 109.47361 * 300.00177 * 15 13 11 18 18 H 1.48501 * 109.47273 * 60.00378 * 15 13 11 19 19 C 1.47807 * 134.46136 * 359.86744 * 7 5 4 20 20 C 1.39868 * 107.92399 * 179.75336 * 3 2 1 21 21 N 1.30840 * 108.20253 * 0.24141 * 20 3 2 22 22 N 1.34957 * 126.12270 * 180.16868 * 2 1 3 23 23 C 1.46494 * 126.03896 * 0.02562 * 22 2 1 24 24 H 1.09010 * 109.46741 * 89.99937 * 1 2 3 25 25 H 1.08997 * 109.47692 * 210.00276 * 1 2 3 26 26 H 1.09000 * 109.47190 * 330.01067 * 1 2 3 27 27 H 1.08997 * 109.47401 * 324.71034 * 4 3 2 28 28 H 1.09003 * 109.47034 * 204.71638 * 4 3 2 29 29 H 1.08992 * 113.77064 * 41.05629 * 8 7 5 30 30 H 1.08997 * 113.76476 * 269.65826 * 8 7 5 31 31 H 0.96694 * 114.00247 * 174.14979 * 10 9 8 32 32 H 0.97001 * 120.00716 * 354.86282 * 14 13 11 33 33 H 1.08994 * 113.77033 * 90.37473 * 19 7 5 34 34 H 1.09004 * 113.83092 * 318.91824 * 19 7 5 35 35 H 1.08001 * 125.90046 * 180.21814 * 20 3 2 36 36 H 1.09003 * 109.47422 * 270.25844 * 23 22 2 37 37 H 1.09001 * 109.47209 * 30.26478 * 23 22 2 38 38 H 1.08997 * 109.47221 * 150.25730 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0928 0.0000 4 6 1.8434 2.5275 0.0005 5 6 1.5654 2.9653 1.4155 6 8 1.7258 2.1887 2.3331 7 7 1.1387 4.2199 1.6612 8 6 0.7790 4.9699 2.8803 9 6 1.1261 6.2366 2.0772 10 8 2.4899 6.6434 2.2055 11 6 0.1535 7.3696 2.2808 12 1 -0.5168 7.3603 3.1276 13 6 0.1193 8.4179 1.3859 14 7 -0.5110 9.5290 1.6987 15 14 0.9681 8.2600 -0.2705 16 1 0.7861 9.5160 -1.0416 17 1 2.4176 8.0131 -0.0625 18 1 0.3759 7.1257 -1.0242 19 6 0.8450 5.3974 0.8174 20 6 3.6334 0.6558 0.0057 21 7 3.6333 -0.6526 0.0038 22 7 2.3025 -1.0901 -0.0032 23 6 1.8538 -2.4846 -0.0078 24 1 -0.3633 0.0000 -1.0278 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 0.9334 2.6167 -0.5928 28 1 2.6206 3.1593 -0.4293 29 1 1.4468 4.7865 3.7219 30 1 -0.2750 4.8942 3.1477 31 1 2.7348 7.3842 1.6344 32 1 -1.0143 9.5848 2.5260 33 1 -0.1895 5.4475 0.4779 34 1 1.5655 5.5548 0.0147 35 1 4.5084 1.2889 0.0105 36 1 1.7377 -2.8324 1.0187 37 1 0.8977 -2.5569 -0.5264 38 1 2.5920 -3.1022 -0.5194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347403939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:47:46 Heat of formation + Delta-G solvation = 7.505494 kcal Electronic energy + Delta-G solvation = -21863.947499 eV Core-core repulsion = 18515.802798 eV Total energy + Delta-G solvation = -3348.144701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.32587 -41.19277 -39.10582 -35.91791 -34.61775 -34.60917 -33.85109 -31.28951 -29.81166 -27.64989 -27.48885 -26.84157 -25.78827 -22.10963 -21.63843 -20.59653 -19.91630 -19.76534 -18.07111 -17.57822 -17.33237 -16.82663 -16.54310 -16.23267 -15.66062 -15.25262 -15.19986 -14.92013 -14.54025 -14.21839 -14.05238 -13.92200 -13.75694 -13.69094 -13.28174 -13.19438 -13.02922 -12.84295 -12.63488 -12.38693 -12.09720 -11.70628 -11.55576 -11.26999 -10.96973 -10.82570 -10.28117 -10.17296 -9.60881 -9.25956 -8.78936 -6.55937 0.88388 1.47963 1.55794 1.58268 1.68990 1.72474 1.74291 2.13087 2.49166 2.95293 3.37775 3.60144 3.77606 3.79892 3.84239 4.08866 4.21243 4.36373 4.38250 4.41507 4.45394 4.46229 4.61935 4.64002 4.68238 4.69597 4.75332 4.91745 4.96333 5.00591 5.07483 5.23125 5.67074 5.68392 5.93955 6.14987 6.43258 6.71972 6.84552 7.00897 7.23098 7.31652 8.55653 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033755 B = 0.004107 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.296169 B = 6816.810636 C = 6899.625031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.096 3.904 3 C -0.243 4.243 4 C -0.044 4.044 5 C 0.527 3.473 6 O -0.591 6.591 7 N -0.635 5.635 8 C 0.121 3.879 9 C 0.189 3.811 10 O -0.574 6.574 11 C -0.624 4.624 12 H 0.028 0.972 13 C -0.009 4.009 14 N -0.923 5.923 15 Si 1.070 2.930 16 H -0.292 1.292 17 H -0.245 1.245 18 H -0.227 1.227 19 C 0.072 3.928 20 C 0.050 3.950 21 N -0.335 5.335 22 N -0.381 5.381 23 C 0.092 3.908 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.374 0.626 32 H 0.256 0.744 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.194 0.806 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -18.358 -10.873 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.033 4.033 3 C -0.255 4.255 4 C -0.084 4.084 5 C 0.319 3.681 6 O -0.472 6.472 7 N -0.369 5.369 8 C -0.002 4.002 9 C 0.148 3.852 10 O -0.384 6.384 11 C -0.661 4.661 12 H 0.047 0.953 13 C -0.209 4.209 14 N -0.557 5.557 15 Si 0.889 3.111 16 H -0.218 1.218 17 H -0.170 1.170 18 H -0.150 1.150 19 C -0.051 4.051 20 C -0.135 4.135 21 N -0.156 5.156 22 N -0.163 5.163 23 C -0.048 4.048 24 H 0.126 0.874 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.225 0.775 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.210 0.790 36 H 0.096 0.904 37 H 0.133 0.867 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.728 -19.888 -11.357 23.065 hybrid contribution -1.069 0.872 2.069 2.486 sum 1.659 -19.017 -9.289 21.229 Atomic orbital electron populations 1.20550 0.85212 1.04272 1.04760 1.21289 0.95851 0.86880 0.99265 1.19400 0.92842 0.94605 1.18641 1.19850 1.04749 0.92391 0.91458 1.21154 0.75633 0.78639 0.92657 1.90630 1.55302 1.52851 1.48413 1.50184 1.64894 1.10722 1.11114 1.23124 0.99832 0.87373 0.89836 1.20394 0.80903 0.91229 0.92688 1.86364 1.28617 1.54896 1.68506 1.22314 1.22221 1.08952 1.12646 0.95346 1.27426 0.96854 0.90350 1.06320 1.70961 1.31899 1.26045 1.26818 0.83891 0.77402 0.78152 0.71653 1.21807 1.16955 1.15002 1.24531 1.02398 0.81528 0.96600 1.24023 0.98423 0.92206 0.98831 1.77224 0.98204 1.13324 1.26877 1.48676 1.03316 1.07282 1.57064 1.22161 1.02469 0.75967 1.04212 0.87387 0.89477 0.90998 0.86164 0.86513 0.92449 0.88945 0.77533 0.93468 0.87646 0.88519 0.78957 0.90423 0.86655 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.59 71.23 0.68 -0.84 16 2 C 0.10 2.37 6.93 41.40 0.29 2.65 16 3 C -0.24 -6.74 4.59 -20.14 -0.09 -6.83 16 4 C -0.04 -1.14 5.48 29.10 0.16 -0.98 16 5 C 0.53 18.88 8.05 87.66 0.71 19.59 16 6 O -0.59 -25.91 16.76 -3.02 -0.05 -25.96 16 7 N -0.63 -23.61 3.61 -839.67 -3.03 -26.64 16 8 C 0.12 5.09 8.23 86.49 0.71 5.80 16 9 C 0.19 8.21 1.07 -10.87 -0.01 8.20 16 10 O -0.57 -25.30 13.47 -148.98 -2.01 -27.30 16 11 C -0.62 -32.16 9.04 25.60 0.23 -31.93 16 12 H 0.03 1.64 8.06 -2.91 -0.02 1.62 16 13 C -0.01 -0.47 5.44 84.65 0.46 -0.01 16 14 N -0.92 -52.93 13.70 21.45 0.29 -52.64 16 15 Si 1.07 40.32 24.56 68.60 1.68 42.00 16 16 H -0.29 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.24 -7.86 5.81 99.48 0.58 -7.28 16 18 H -0.23 -6.94 6.48 99.48 0.64 -6.30 16 19 C 0.07 2.50 5.39 86.45 0.47 2.97 16 20 C 0.05 1.43 11.96 85.24 1.02 2.45 16 21 N -0.33 -9.96 12.58 -57.02 -0.72 -10.68 16 22 N -0.38 -9.35 4.01 -356.05 -1.43 -10.78 16 23 C 0.09 1.28 11.09 127.77 1.42 2.70 16 24 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.09 1.17 7.74 -2.39 -0.02 1.15 16 26 H 0.07 1.46 7.88 -2.39 -0.02 1.44 16 27 H 0.12 2.44 8.02 -2.39 -0.02 2.42 16 28 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.09 3.74 8.09 -2.39 -0.02 3.72 16 31 H 0.37 14.75 6.07 -74.06 -0.45 14.30 16 32 H 0.26 15.08 8.73 -92.71 -0.81 14.27 16 33 H 0.11 3.48 7.97 -2.39 -0.02 3.46 16 34 H 0.10 2.83 6.87 -2.38 -0.02 2.81 16 35 H 0.19 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.12 0.87 7.68 -2.39 -0.02 0.85 16 38 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.95 320.81 1.18 -73.77 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.40 Total: 34.45 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 6.04 Total: 3.77 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.89 Total: -100.73 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.06 Total: -53.26 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.68 Total: 42.00 kcal Total: -74.95 1.18 -73.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347403939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.276 kcal (2) G-P(sol) polarization free energy of solvation -74.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds