Wall clock time and date at job start Tue Mar 31 2020 01:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30842 * 125.89743 * 2 1 4 4 N 1.40085 * 108.20312 * 179.97438 * 3 2 1 5 5 H 0.96994 * 126.03720 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92706 * 0.02562 * 4 3 2 7 7 C 1.50693 * 126.12891 * 180.26707 * 6 4 3 8 8 C 1.35318 * 107.74626 * 359.97438 * 6 4 3 9 9 C 1.50699 * 126.04364 * 179.97438 * 8 6 4 10 10 C 1.50701 * 109.46854 * 90.00067 * 9 8 6 11 11 O 1.21277 * 119.99951 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99584 * 180.02562 * 10 9 8 13 13 C 1.47061 * 136.05821 * 359.63060 * 12 10 9 14 14 C 1.53246 * 88.08166 * 207.20647 * 13 12 10 15 15 O 1.42897 * 114.01632 * 87.71814 * 14 13 12 16 16 C 1.50702 * 114.32300 * 220.47123 * 14 13 12 17 17 H 1.07999 * 119.99752 * 99.23725 * 16 14 13 18 18 C 1.37874 * 119.99911 * 279.23601 * 16 14 13 19 19 N 1.31511 * 120.00475 * 10.19271 * 18 16 14 20 20 Si 1.86802 * 119.99912 * 190.19794 * 18 16 14 21 21 H 1.48498 * 109.47361 * 84.99218 * 20 18 16 22 22 H 1.48504 * 109.47207 * 204.99379 * 20 18 16 23 23 H 1.48502 * 109.47106 * 324.99523 * 20 18 16 24 24 C 1.47064 * 136.05465 * 180.02562 * 12 10 9 25 25 H 1.08999 * 109.47825 * 270.04780 * 1 2 3 26 26 H 1.09008 * 109.46939 * 30.04834 * 1 2 3 27 27 H 1.09003 * 109.47218 * 150.04219 * 1 2 3 28 28 H 1.08999 * 109.46877 * 269.68446 * 7 6 4 29 29 H 1.09002 * 109.47350 * 29.68377 * 7 6 4 30 30 H 1.08999 * 109.47397 * 149.68188 * 7 6 4 31 31 H 1.09001 * 109.47323 * 210.00438 * 9 8 6 32 32 H 1.08999 * 109.46621 * 330.00752 * 9 8 6 33 33 H 1.09003 * 113.47192 * 321.93537 * 13 12 10 34 34 H 1.09004 * 113.46876 * 92.37990 * 13 12 10 35 35 H 0.96696 * 113.99992 * 90.40431 * 15 14 13 36 36 H 0.96996 * 120.00655 * 179.97438 * 19 18 16 37 37 H 1.09002 * 113.46594 * 267.62414 * 24 12 10 38 38 H 1.09001 * 113.47224 * 38.05362 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0006 5 1 4.3908 1.2079 0.0004 6 6 3.6142 -0.7153 0.0004 7 6 4.8350 -1.5989 0.0065 8 6 2.3271 -1.1330 0.0002 9 6 1.8598 -2.5657 -0.0006 10 6 1.7042 -3.0441 1.4200 11 8 1.9482 -2.2952 2.3422 12 7 1.2938 -4.3042 1.6656 13 6 0.9074 -5.4689 0.8551 14 6 0.0290 -5.9265 2.0244 15 8 -1.2931 -5.3846 2.0055 16 6 0.0642 -7.4106 2.2836 17 1 0.6902 -7.8068 3.0696 18 6 -0.7026 -8.2626 1.5175 19 7 -1.3064 -7.8135 0.4390 20 14 -0.8839 -10.0550 2.0114 21 1 -1.9822 -10.1868 3.0022 22 1 -1.2000 -10.8698 0.8108 23 1 0.3863 -10.5333 2.6140 24 6 1.0286 -5.1173 2.8620 25 1 -0.3635 0.0009 1.0276 26 1 -0.3633 0.8896 -0.5146 27 1 -0.3634 -0.8904 -0.5132 28 1 5.1312 -1.8163 -1.0197 29 1 5.6502 -1.0888 0.5197 30 1 4.6065 -2.5307 0.5239 31 1 0.9010 -2.6349 -0.5144 32 1 2.5933 -3.1868 -0.5147 33 1 0.3383 -5.2075 -0.0370 34 1 1.7360 -6.1450 0.6440 35 1 -1.9343 -5.9286 1.5281 36 1 -1.8456 -8.4130 -0.1003 37 1 1.8899 -5.6986 3.1913 38 1 0.5625 -4.5574 3.6728 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356551594.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:06:32 Heat of formation + Delta-G solvation = 17.054459 kcal Electronic energy + Delta-G solvation = -21899.037219 eV Core-core repulsion = 18551.306592 eV Total energy + Delta-G solvation = -3347.730627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.27870 -39.42451 -37.30425 -33.98201 -33.34225 -32.76503 -32.30145 -29.62219 -28.32803 -27.43349 -26.12133 -25.06441 -24.68895 -20.53625 -20.02480 -19.24359 -18.10120 -17.39903 -17.16823 -16.21876 -15.39576 -15.05070 -14.89626 -14.50042 -14.20396 -13.90146 -13.45200 -13.25740 -13.17100 -12.82096 -12.65674 -12.33773 -12.27990 -12.16492 -12.02332 -11.83013 -11.75187 -11.36374 -11.06305 -10.92726 -10.51365 -10.38301 -10.26611 -9.53387 -9.11210 -9.05958 -8.88805 -8.37410 -8.18661 -7.77770 -6.40020 -4.49038 1.94805 2.78904 2.94060 3.15518 3.23552 3.25373 3.33306 3.77497 4.19562 4.68701 4.77864 4.83107 5.02179 5.24038 5.31911 5.39485 5.41788 5.53161 5.62332 5.73375 5.79584 5.90696 5.98035 6.06157 6.13381 6.24630 6.28402 6.44934 6.59127 6.68803 6.77389 6.82554 7.10452 7.37542 7.61248 7.79530 7.80873 8.53791 8.62679 8.90337 9.21974 9.26826 10.66097 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.003989 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.564519 B = 7017.141279 C = 7295.708349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.097 3.903 3 N -0.302 5.302 4 N -0.480 5.480 5 H 0.434 0.566 6 C 0.097 3.903 7 C -0.092 4.092 8 C -0.208 4.208 9 C -0.055 4.055 10 C 0.535 3.465 11 O -0.558 6.558 12 N -0.640 5.640 13 C 0.081 3.919 14 C 0.238 3.762 15 O -0.566 6.566 16 C -0.540 4.540 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.889 5.889 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.108 3.892 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.386 0.614 36 H 0.271 0.729 37 H 0.083 0.917 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.619 8.040 -4.939 12.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 N -0.126 5.126 4 N -0.188 5.188 5 H 0.278 0.722 6 C -0.031 4.031 7 C -0.151 4.151 8 C -0.219 4.219 9 C -0.096 4.096 10 C 0.325 3.675 11 O -0.437 6.437 12 N -0.374 5.374 13 C -0.042 4.042 14 C 0.196 3.804 15 O -0.375 6.375 16 C -0.579 4.579 17 H 0.090 0.910 18 C -0.129 4.129 19 N -0.527 5.527 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.015 4.015 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.237 0.763 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.003 10.341 -4.314 13.770 hybrid contribution 0.143 -2.010 -0.204 2.025 sum 8.146 8.332 -4.518 12.498 Atomic orbital electron populations 1.20210 0.86785 1.03028 1.03406 1.22153 0.96897 0.90105 0.97847 1.77214 0.86390 1.22243 1.26754 1.45998 1.07224 1.04656 1.60895 0.72220 1.20753 0.96806 0.84895 1.00679 1.20452 0.92851 0.98724 1.03055 1.19113 0.91296 0.94961 1.16542 1.19808 1.03216 0.91733 0.94814 1.20067 0.76390 0.80072 0.91013 1.90632 1.52001 1.54483 1.46598 1.49805 1.64847 1.09880 1.12834 1.24024 0.98338 0.83275 0.98606 1.19485 0.80629 0.90747 0.89500 1.86092 1.19900 1.52654 1.78829 1.21355 1.27707 0.90125 1.18674 0.91014 1.25061 0.94575 0.99618 0.93695 1.69756 1.32126 1.37107 1.13722 0.86441 0.78956 0.83448 0.78243 1.20157 1.21070 1.19650 1.23256 0.97547 0.90488 0.90187 0.90204 0.91056 0.90315 0.90175 0.91137 0.89577 0.88458 0.89001 0.91555 0.90227 0.76307 0.91883 0.89875 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.26 36.01 0.37 -0.66 16 2 C 0.10 1.56 7.22 -82.40 -0.59 0.96 16 3 N -0.30 -4.83 12.70 33.67 0.43 -4.41 16 4 N -0.48 -6.33 7.36 33.47 0.25 -6.08 16 5 H 0.43 4.08 8.96 -182.61 -1.64 2.44 16 6 C 0.10 1.33 7.21 -82.27 -0.59 0.74 16 7 C -0.09 -0.93 10.04 36.00 0.36 -0.57 16 8 C -0.21 -3.30 4.59 -105.05 -0.48 -3.78 16 9 C -0.05 -0.87 5.43 -29.04 -0.16 -1.02 16 10 C 0.54 10.73 8.07 -10.98 -0.09 10.64 16 11 O -0.56 -12.97 16.81 5.56 0.09 -12.88 16 12 N -0.64 -13.27 3.69 -185.40 -0.68 -13.95 16 13 C 0.08 1.68 7.82 -8.65 -0.07 1.61 16 14 C 0.24 5.54 1.41 -91.40 -0.13 5.41 16 15 O -0.57 -13.97 13.56 -35.23 -0.48 -14.45 16 16 C -0.54 -13.17 8.65 -34.44 -0.30 -13.47 16 17 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 18 C 0.07 1.79 5.21 -17.82 -0.09 1.70 16 19 N -0.89 -21.79 11.81 55.43 0.65 -21.13 16 20 Si 0.90 18.94 29.55 -169.99 -5.02 13.92 16 21 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 C 0.11 2.33 8.03 -8.52 -0.07 2.26 16 25 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 27 H 0.08 0.99 7.25 -51.93 -0.38 0.61 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.98 7.79 -51.93 -0.40 0.57 16 31 H 0.10 1.45 7.25 -51.93 -0.38 1.08 16 32 H 0.09 1.25 7.78 -51.93 -0.40 0.84 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 35 H 0.39 9.48 7.09 45.56 0.32 9.80 16 36 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 37 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 38 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -30.53 328.06 -7.46 -37.99 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -5.80 Total: 12.24 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.84 Total: 3.82 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 0.64 Total: -45.57 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.38 Total: -27.33 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.53 -7.46 -37.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551594.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.042 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds