Wall clock time and date at job start Tue Mar 31 2020 01:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30012 * 127.33666 * 2 1 4 4 O 1.20661 * 112.30081 * 179.72133 * 3 2 1 5 5 C 1.33491 * 113.15836 * 0.50763 * 4 3 2 6 6 C 1.37357 * 106.33880 * 359.51685 * 5 4 3 7 7 C 1.47399 * 128.56437 * 180.22354 * 6 5 4 8 8 O 1.21608 * 120.00084 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00062 * 0.02961 * 7 6 5 10 10 C 1.46494 * 120.00164 * 179.97438 * 9 7 6 11 11 C 1.53042 * 109.46068 * 275.06354 * 10 9 7 12 12 C 1.53188 * 109.31587 * 178.61051 * 11 10 9 13 13 N 1.46935 * 108.77241 * 54.63807 * 12 11 10 14 14 C 1.36929 * 120.63016 * 126.41330 * 13 12 11 15 15 H 1.08009 * 120.00267 * 332.60642 * 14 13 12 16 16 C 1.38812 * 120.00213 * 152.61079 * 14 13 12 17 17 N 1.31620 * 120.00415 * 159.34630 * 16 14 13 18 18 Si 1.86808 * 119.99502 * 339.33916 * 16 14 13 19 19 H 1.48491 * 109.46812 * 92.94782 * 18 16 14 20 20 H 1.48506 * 109.46874 * 212.94392 * 18 16 14 21 21 H 1.48490 * 109.47051 * 332.94514 * 18 16 14 22 22 C 1.46927 * 118.73741 * 306.38993 * 13 12 11 23 23 C 1.53037 * 109.46394 * 154.99652 * 10 9 7 24 24 H 1.09002 * 109.46989 * 269.97001 * 1 2 3 25 25 H 1.08995 * 109.47120 * 29.97150 * 1 2 3 26 26 H 1.09004 * 109.47090 * 149.97336 * 1 2 3 27 27 H 1.08000 * 126.83117 * 179.77690 * 5 4 3 28 28 H 0.97002 * 119.99837 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46088 * 35.02144 * 10 9 7 30 30 H 1.08999 * 109.49821 * 298.56592 * 11 10 9 31 31 H 1.09000 * 109.49341 * 58.66344 * 11 10 9 32 32 H 1.09000 * 109.59138 * 294.85051 * 12 11 10 33 33 H 1.09004 * 109.70541 * 174.48829 * 12 11 10 34 34 H 0.97000 * 120.00143 * 180.02562 * 17 16 14 35 35 H 1.09006 * 109.58439 * 293.82327 * 22 13 12 36 36 H 1.08995 * 109.70102 * 173.46850 * 22 13 12 37 37 H 1.09005 * 109.49548 * 301.33815 * 23 10 9 38 38 H 1.09004 * 109.49767 * 61.43150 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0054 5 6 3.6495 -0.6008 -0.0008 6 6 2.3992 -1.1696 -0.0006 7 6 2.0401 -2.5992 -0.0016 8 8 0.8706 -2.9324 -0.0017 9 7 3.0080 -3.5372 -0.0024 10 6 2.6511 -4.9580 -0.0028 11 6 2.4039 -5.4221 1.4344 12 6 1.9973 -6.8990 1.4271 13 7 3.0249 -7.6688 0.7128 14 6 3.6174 -8.7546 1.3002 15 1 3.6941 -8.8118 2.3760 16 6 4.1195 -9.7818 0.5131 17 7 5.0239 -10.6037 1.0019 18 14 3.5116 -9.9976 -1.2401 19 1 4.4095 -9.2655 -2.1689 20 1 3.5091 -11.4411 -1.5889 21 1 2.1331 -9.4580 -1.3559 22 6 3.4042 -7.2518 -0.6440 23 6 3.7949 -5.7709 -0.6135 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8898 -0.5143 27 1 4.5967 -1.1196 -0.0013 28 1 3.9409 -3.2714 -0.0026 29 1 1.7461 -5.1049 -0.5924 30 1 3.3159 -5.2987 2.0185 31 1 1.6048 -4.8269 1.8765 32 1 1.0385 -7.0116 0.9210 33 1 1.9146 -7.2625 2.4514 34 1 5.3750 -11.3213 0.4517 35 1 2.5601 -7.3931 -1.3191 36 1 4.2506 -7.8461 -0.9880 37 1 3.9860 -5.4240 -1.6291 38 1 4.6939 -5.6442 -0.0101 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402577573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:14 Heat of formation + Delta-G solvation = 22.108789 kcal Electronic energy + Delta-G solvation = -21751.359307 eV Core-core repulsion = 18403.847852 eV Total energy + Delta-G solvation = -3347.511455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.95825 -40.96736 -39.13358 -36.14286 -35.47450 -34.23085 -33.19300 -31.96992 -31.56718 -29.70332 -27.14831 -25.53748 -24.44773 -23.42216 -22.34324 -21.49792 -21.21488 -19.40650 -18.77444 -18.66516 -17.56675 -17.47152 -16.83490 -16.03152 -15.89900 -15.78691 -15.32567 -14.95287 -14.65299 -14.50637 -14.27111 -14.19131 -14.14439 -13.79093 -13.46825 -13.42593 -12.58748 -12.55549 -12.34285 -12.26956 -12.02104 -11.79390 -11.55888 -11.38108 -11.18094 -10.96702 -10.79933 -10.69098 -10.08027 -8.95802 -8.15197 -5.47626 0.08373 0.72414 1.30498 1.44743 1.52890 1.84809 2.14421 2.28569 2.42510 3.00739 3.07292 3.30955 3.34009 3.74904 3.82988 3.96298 4.00543 4.23298 4.33050 4.43067 4.49868 4.59806 4.61451 4.64341 4.70170 4.77212 4.88075 4.94229 5.02820 5.08252 5.15687 5.18599 5.39881 5.47002 5.87881 6.13901 6.49871 6.92011 7.14626 7.20476 7.62543 8.02593 9.04643 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038325 B = 0.003688 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.416498 B = 7590.203501 C = 7734.212640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.053 3.947 3 N -0.382 5.382 4 O 0.097 5.903 5 C 0.034 3.966 6 C -0.282 4.282 7 C 0.596 3.404 8 O -0.568 6.568 9 N -0.701 5.701 10 C 0.162 3.838 11 C -0.129 4.129 12 C 0.146 3.854 13 N -0.619 5.619 14 C -0.249 4.249 15 H 0.053 0.947 16 C -0.033 4.033 17 N -0.956 5.956 18 Si 0.944 3.056 19 H -0.267 1.267 20 H -0.313 1.313 21 H -0.265 1.265 22 C 0.120 3.880 23 C -0.127 4.127 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.277 0.723 28 H 0.415 0.585 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.262 0.738 35 H 0.031 0.969 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 22.226 -4.635 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.109 4.109 3 N -0.091 5.091 4 O 0.039 5.961 5 C -0.048 4.048 6 C -0.289 4.289 7 C 0.383 3.617 8 O -0.448 6.448 9 N -0.352 5.352 10 C 0.058 3.942 11 C -0.169 4.169 12 C 0.021 3.979 13 N -0.344 5.344 14 C -0.379 4.379 15 H 0.070 0.930 16 C -0.228 4.228 17 N -0.603 5.603 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.242 1.242 21 H -0.190 1.190 22 C -0.005 4.005 23 C -0.167 4.167 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.102 0.898 27 H 0.293 0.707 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.111 0.889 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.953 23.186 -4.653 23.832 hybrid contribution 0.133 -1.594 -0.472 1.667 sum -2.819 21.593 -5.125 22.371 Atomic orbital electron populations 1.20277 0.84498 1.04360 1.04286 1.25202 0.99766 0.86787 0.99148 1.73696 0.89883 1.24004 1.21483 1.84550 1.20838 1.24050 1.66662 1.27295 1.00975 0.82947 0.93606 1.22261 0.94212 0.94544 1.17910 1.17050 0.85210 0.83762 0.75649 1.90783 1.19891 1.82551 1.51581 1.45773 1.09811 1.05385 1.74232 1.20710 0.98371 0.78754 0.96391 1.22205 1.01639 0.96272 0.96743 1.21012 0.90162 0.90425 0.96338 1.44513 1.43787 1.31226 1.14843 1.18868 1.30792 0.96213 0.92005 0.92954 1.25881 0.98559 0.96352 1.01959 1.69959 1.30043 1.20960 1.39293 0.85959 0.79829 0.75258 0.81667 1.19297 1.24245 1.19012 1.21381 0.98010 0.94916 0.86237 1.22166 0.97953 0.94467 1.02079 0.89262 0.89239 0.89765 0.70734 0.74722 0.90996 0.91565 0.91663 0.95335 0.92411 0.92914 0.95106 0.92321 0.88916 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.15 71.24 0.72 -0.73 16 2 C 0.05 1.14 7.58 45.16 0.34 1.48 16 3 N -0.38 -8.05 12.01 -44.78 -0.54 -8.59 16 4 O 0.10 1.54 11.06 77.00 0.85 2.39 16 5 C 0.03 0.36 11.85 67.61 0.80 1.16 16 6 C -0.28 -5.34 6.47 -18.74 -0.12 -5.46 16 7 C 0.60 14.12 7.78 86.66 0.67 14.79 16 8 O -0.57 -18.06 15.36 -4.06 -0.06 -18.12 16 9 N -0.70 -13.88 5.07 -445.71 -2.26 -16.14 16 10 C 0.16 4.38 2.42 45.02 0.11 4.49 16 11 C -0.13 -3.92 5.65 30.67 0.17 -3.75 16 12 C 0.15 5.57 6.52 86.36 0.56 6.13 16 13 N -0.62 -27.94 2.77 -699.08 -1.94 -29.87 16 14 C -0.25 -13.77 10.03 84.03 0.84 -12.93 16 15 H 0.05 3.18 8.06 -2.91 -0.02 3.15 16 16 C -0.03 -1.86 5.23 84.86 0.44 -1.42 16 17 N -0.96 -58.90 13.97 21.65 0.30 -58.60 16 18 Si 0.94 45.18 24.35 68.60 1.67 46.85 16 19 H -0.27 -11.71 6.62 99.48 0.66 -11.05 16 20 H -0.31 -15.44 7.11 99.48 0.71 -14.73 16 21 H -0.27 -12.35 6.63 99.48 0.66 -11.69 16 22 C 0.12 4.67 4.20 86.36 0.36 5.04 16 23 C -0.13 -3.54 5.55 30.67 0.17 -3.37 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.80 7.11 -2.39 -0.02 1.79 16 27 H 0.28 -0.29 7.68 -2.91 -0.02 -0.31 16 28 H 0.42 4.90 7.79 -92.71 -0.72 4.18 16 29 H 0.07 2.22 7.58 -2.39 -0.02 2.20 16 30 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 2.26 7.93 -2.39 -0.02 2.24 16 34 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 35 H 0.03 1.19 7.08 -2.38 -0.02 1.18 16 36 H 0.06 2.52 4.50 -2.39 -0.01 2.51 16 37 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -74.01 311.39 3.38 -70.63 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.27 Total: 6.01 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.08 Total: 5.43 kcal Atomic # 7 Polarization: -108.77 SS G_CDS: -4.43 Total: -113.20 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: 0.79 Total: -15.72 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.67 Total: 46.85 kcal Total: -74.01 3.38 -70.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402577573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.743 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds