Wall clock time and date at job start Tue Mar 31 2020 01:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30838 * 125.90251 * 2 1 4 4 N 1.40079 * 108.20651 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.03738 * 179.97438 * 4 3 2 6 6 C 1.34955 * 107.92419 * 359.75361 * 4 3 2 7 7 C 1.50703 * 126.12353 * 180.23982 * 6 4 3 8 8 C 1.35306 * 107.74530 * 0.39427 * 6 4 3 9 9 C 1.50706 * 126.03988 * 179.87342 * 8 6 4 10 10 H 1.09001 * 109.70607 * 5.91589 * 9 8 6 11 11 C 1.52874 * 109.61850 * 245.60744 * 9 8 6 12 12 O 1.42962 * 109.30007 * 188.11208 * 11 9 8 13 13 C 1.42959 * 114.16425 * 62.45123 * 12 11 9 14 14 C 1.53297 * 109.22503 * 297.41939 * 13 12 11 15 15 N 1.47153 * 108.38296 * 52.30165 * 14 13 12 16 16 C 1.34775 * 120.98351 * 129.44251 * 15 14 13 17 17 O 1.21685 * 120.00214 * 173.84400 * 16 15 14 18 18 C 1.46379 * 119.99983 * 353.84503 * 16 15 14 19 19 H 1.07996 * 119.99703 * 340.66028 * 18 16 15 20 20 C 1.40045 * 120.00213 * 160.66260 * 18 16 15 21 21 N 1.30672 * 119.99709 * 337.96355 * 20 18 16 22 22 Si 1.86800 * 120.00373 * 157.96910 * 20 18 16 23 23 H 1.48506 * 109.46852 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47156 * 240.00126 * 22 20 18 25 25 H 1.48499 * 109.47230 * 119.99455 * 22 20 18 26 26 H 1.08996 * 109.46739 * 274.89905 * 1 2 3 27 27 H 1.09003 * 109.46605 * 34.89609 * 1 2 3 28 28 H 1.09000 * 109.47466 * 154.89604 * 1 2 3 29 29 H 1.08994 * 109.47148 * 270.17520 * 7 6 4 30 30 H 1.09002 * 109.47353 * 30.17911 * 7 6 4 31 31 H 1.08998 * 109.46481 * 150.17745 * 7 6 4 32 32 H 1.09008 * 109.57715 * 68.10405 * 11 9 8 33 33 H 1.08997 * 109.36889 * 307.99912 * 11 9 8 34 34 H 1.09003 * 109.51590 * 177.49567 * 13 12 11 35 35 H 1.08998 * 109.55627 * 57.37184 * 13 12 11 36 36 H 1.09000 * 109.68408 * 292.58014 * 14 13 12 37 37 H 1.09002 * 109.71707 * 172.04273 * 14 13 12 38 38 H 0.97001 * 120.00223 * 354.15377 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0046 7 6 4.8350 -1.5991 0.0110 8 6 2.3271 -1.1331 -0.0005 9 6 1.8598 -2.5658 -0.0002 10 1 2.7157 -3.2316 0.1106 11 6 1.1412 -2.8716 -1.3144 12 8 0.5379 -4.1652 -1.2332 13 6 -0.4647 -4.2808 -0.2208 14 6 0.1757 -4.0495 1.1527 15 7 0.9185 -2.7799 1.1105 16 6 0.7378 -1.8385 2.0579 17 8 1.4400 -0.8448 2.0701 18 6 -0.3031 -2.0115 3.0724 19 1 -1.1157 -2.7017 2.9000 20 6 -0.2454 -1.2820 4.2664 21 7 0.8943 -0.7943 4.6796 22 14 -1.7975 -1.0062 5.2686 23 1 -2.9473 -1.6555 4.5890 24 1 -2.0547 0.4511 5.3919 25 1 -1.6247 -1.5947 6.6210 26 1 -0.3633 0.0878 1.0239 27 1 -0.3632 0.8429 -0.5879 28 1 -0.3634 -0.9306 -0.4360 29 1 5.1337 -1.8135 -1.0150 30 1 5.6489 -1.0905 0.5277 31 1 4.6052 -2.5323 0.5251 32 1 1.8583 -2.8552 -2.1352 33 1 0.3705 -2.1207 -1.4882 34 1 -0.9031 -5.2782 -0.2547 35 1 -1.2419 -3.5356 -0.3902 36 1 0.8592 -4.8672 1.3815 37 1 -0.6005 -3.9955 1.9160 38 1 1.7135 -1.0080 4.2062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408320463.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:56 Heat of formation + Delta-G solvation = 5.430746 kcal Electronic energy + Delta-G solvation = -23739.552357 eV Core-core repulsion = 20391.317689 eV Total energy + Delta-G solvation = -3348.234669 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.84616 -38.92363 -36.94309 -33.74500 -32.90068 -32.43022 -32.06324 -29.63625 -27.66461 -26.93183 -26.00362 -25.52896 -23.26351 -21.48503 -19.84640 -19.54830 -18.49113 -17.26486 -16.35840 -15.92778 -15.52254 -14.86586 -14.71190 -14.37517 -14.27499 -13.93074 -13.65680 -13.07161 -12.99194 -12.68163 -12.59982 -12.10334 -11.99283 -11.83323 -11.77889 -11.34085 -11.10002 -11.04242 -10.80405 -10.71903 -10.30163 -10.26497 -10.01323 -9.64333 -9.58697 -8.75228 -8.53247 -8.17514 -7.33539 -6.93355 -6.50853 -4.68369 2.66101 3.26350 3.30687 3.45231 3.53956 3.63855 4.09497 4.19718 4.43866 4.51773 5.21890 5.26875 5.40162 5.41408 5.44002 5.56519 5.57456 5.68194 5.74592 5.80933 5.91769 5.96455 6.04302 6.08540 6.18860 6.28666 6.38799 6.45658 6.74783 6.85970 6.88279 7.36566 7.43245 7.55562 7.88213 8.01622 8.10311 8.35936 8.57911 8.85980 9.39685 10.39303 10.53258 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.008808 C = 0.006729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.810309 B = 3178.325239 C = 4160.188685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.164 3.836 3 N -0.315 5.315 4 N -0.493 5.493 5 H 0.426 0.574 6 C 0.067 3.933 7 C -0.084 4.084 8 C -0.182 4.182 9 C 0.196 3.804 10 H 0.060 0.940 11 C 0.054 3.946 12 O -0.388 6.388 13 C 0.045 3.955 14 C 0.089 3.911 15 N -0.636 5.636 16 C 0.562 3.438 17 O -0.585 6.585 18 C -0.621 4.621 19 H 0.068 0.932 20 C 0.057 3.943 21 N -0.804 5.804 22 Si 1.071 2.929 23 H -0.280 1.280 24 H -0.279 1.279 25 H -0.283 1.283 26 H 0.093 0.907 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.103 0.897 38 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -5.031 -9.251 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.005 4.005 3 N -0.139 5.139 4 N -0.202 5.202 5 H 0.268 0.732 6 C -0.059 4.059 7 C -0.142 4.142 8 C -0.194 4.194 9 C 0.091 3.909 10 H 0.078 0.922 11 C -0.023 4.023 12 O -0.307 6.307 13 C -0.033 4.033 14 C -0.035 4.035 15 N -0.374 5.374 16 C 0.370 3.630 17 O -0.471 6.471 18 C -0.657 4.657 19 H 0.086 0.914 20 C -0.165 4.165 21 N -0.432 5.432 22 Si 0.897 3.103 23 H -0.206 1.206 24 H -0.205 1.205 25 H -0.210 1.210 26 H 0.112 0.888 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.226 -2.667 -8.021 8.541 hybrid contribution 0.988 -1.290 -0.939 1.876 sum 2.214 -3.956 -8.960 10.042 Atomic orbital electron populations 1.20401 0.88109 1.00821 1.04123 1.21522 0.95911 0.89835 0.93201 1.77071 0.86332 1.22267 1.28184 1.45638 1.06817 1.04046 1.63720 0.73220 1.20311 0.95945 0.85214 1.04413 1.20316 0.93372 0.98515 1.02028 1.18996 0.91424 0.94375 1.14560 1.19548 0.92007 0.91999 0.87391 0.92175 1.23003 0.97089 0.84892 0.97350 1.87859 1.54987 1.32166 1.55673 1.23037 0.90268 1.01635 0.88355 1.22092 0.97076 0.87061 0.97285 1.48254 1.44272 1.17949 1.26933 1.18238 0.83811 0.80978 0.79925 1.90615 1.51754 1.30624 1.74063 1.21842 1.10016 1.29615 1.04213 0.91426 1.26483 1.02561 0.91608 0.95892 1.70112 1.00683 1.33839 1.38597 0.83592 0.73921 0.77443 0.75385 1.20573 1.20476 1.20957 0.88807 0.92813 0.91742 0.91192 0.91824 0.90342 0.88966 0.92601 0.88830 0.93027 0.93092 0.87917 0.88562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 8.65 36.01 0.31 -1.28 16 2 C 0.16 3.64 4.71 -82.40 -0.39 3.25 16 3 N -0.31 -7.05 12.70 33.67 0.43 -6.63 16 4 N -0.49 -9.31 7.36 33.48 0.25 -9.06 16 5 H 0.43 6.45 8.96 -182.62 -1.64 4.81 16 6 C 0.07 1.24 7.21 -82.26 -0.59 0.65 16 7 C -0.08 -1.16 10.11 36.01 0.36 -0.80 16 8 C -0.18 -3.75 3.12 -105.05 -0.33 -4.08 16 9 C 0.20 3.77 3.15 -68.79 -0.22 3.55 16 10 H 0.06 1.13 6.78 -51.93 -0.35 0.77 16 11 C 0.05 0.90 6.16 37.09 0.23 1.12 16 12 O -0.39 -6.38 10.74 -35.23 -0.38 -6.76 16 13 C 0.04 0.68 6.98 37.31 0.26 0.94 16 14 C 0.09 1.61 6.56 -3.53 -0.02 1.58 16 15 N -0.64 -13.62 2.84 -167.95 -0.48 -14.10 16 16 C 0.56 14.44 4.87 -12.99 -0.06 14.38 16 17 O -0.58 -16.49 9.33 5.20 0.05 -16.44 16 18 C -0.62 -16.34 8.57 -35.63 -0.31 -16.65 16 19 H 0.07 1.67 6.15 -52.49 -0.32 1.34 16 20 C 0.06 1.55 5.33 -17.37 -0.09 1.46 16 21 N -0.80 -23.72 13.20 55.55 0.73 -22.99 16 22 Si 1.07 23.14 29.99 -169.99 -5.10 18.04 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H 0.09 2.29 6.59 -51.93 -0.34 1.95 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.25 5.49 -51.93 -0.29 0.96 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 1.13 7.07 -51.93 -0.37 0.77 16 32 H 0.09 1.33 8.14 -51.92 -0.42 0.91 16 33 H 0.06 0.95 5.65 -51.93 -0.29 0.66 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.91 5.52 -51.93 -0.29 1.62 16 38 H 0.30 9.37 6.78 -40.82 -0.28 9.09 16 LS Contribution 298.89 15.07 4.50 4.50 Total: -1.00 -33.23 298.89 -6.76 -39.99 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -5.92 Total: 9.30 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.85 Total: 4.13 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.93 Total: -52.77 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.33 Total: -23.19 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.10 Total: 18.04 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -33.23 -6.76 -39.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408320463.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.416 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds