Wall clock time and date at job start Tue Mar 31 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30834 * 125.89435 * 2 1 4 4 N 1.40089 * 108.20128 * 180.25736 * 3 2 1 5 5 H 0.97000 * 126.03871 * 179.74235 * 4 3 2 6 6 C 1.34949 * 107.92400 * 359.72042 * 4 3 2 7 7 C 1.50703 * 126.12605 * 180.02562 * 6 4 3 8 8 C 1.35314 * 107.74554 * 359.97438 * 6 4 3 9 9 C 1.50697 * 126.03678 * 179.97438 * 8 6 4 10 10 H 1.09000 * 109.71115 * 357.08283 * 9 8 6 11 11 C 1.53299 * 109.68063 * 117.61488 * 9 8 6 12 12 O 1.42966 * 109.22261 * 172.02425 * 11 9 8 13 13 C 1.42959 * 114.16552 * 297.42029 * 12 11 9 14 14 C 1.53290 * 109.22176 * 62.58290 * 13 12 11 15 15 N 1.47144 * 109.68454 * 236.54080 * 9 8 6 16 16 C 1.34776 * 120.98275 * 9.72459 * 15 9 8 17 17 O 1.21687 * 119.99925 * 6.42386 * 16 15 9 18 18 C 1.46380 * 120.00328 * 186.42387 * 16 15 9 19 19 H 1.07996 * 119.99718 * 9.06128 * 18 16 15 20 20 C 1.40045 * 119.99642 * 189.05613 * 18 16 15 21 21 N 1.30664 * 120.00562 * 0.02562 * 20 18 16 22 22 Si 1.86804 * 119.99717 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46934 * 60.00110 * 22 20 18 24 24 H 1.48495 * 109.47271 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.46927 * 300.00478 * 22 20 18 26 26 H 1.08995 * 109.47087 * 268.95455 * 1 2 3 27 27 H 1.08995 * 109.47393 * 28.96188 * 1 2 3 28 28 H 1.09011 * 109.46725 * 148.95542 * 1 2 3 29 29 H 1.08992 * 109.47499 * 269.97844 * 7 6 4 30 30 H 1.09005 * 109.46735 * 29.98095 * 7 6 4 31 31 H 1.08992 * 109.46845 * 149.97399 * 7 6 4 32 32 H 1.09005 * 109.51472 * 291.95135 * 11 9 8 33 33 H 1.09007 * 109.51228 * 52.05133 * 11 9 8 34 34 H 1.09002 * 109.51100 * 182.50410 * 13 12 11 35 35 H 1.08997 * 109.51616 * 302.65631 * 13 12 11 36 36 H 1.08998 * 109.68429 * 67.41943 * 14 13 12 37 37 H 1.09005 * 109.67875 * 187.93312 * 14 13 12 38 38 H 0.97006 * 120.00029 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2080 -0.0108 6 6 3.6142 -0.7153 -0.0033 7 6 4.8350 -1.5989 -0.0072 8 6 2.3271 -1.1330 0.0047 9 6 1.8600 -2.5657 0.0097 10 1 2.7200 -3.2330 -0.0464 11 6 1.0711 -2.8471 1.2937 12 8 0.4765 -4.1443 1.2061 13 6 -0.4723 -4.2828 0.1457 14 6 0.2376 -4.0750 -1.1970 15 7 0.9735 -2.8019 -1.1408 16 6 0.8392 -1.8795 -2.1141 17 8 1.5414 -0.8856 -2.1115 18 6 -0.1512 -2.0730 -3.1744 19 1 -0.8718 -2.8740 -3.1005 20 6 -0.1645 -1.2193 -4.2845 21 7 0.7076 -0.2503 -4.3740 22 14 -1.4289 -1.4658 -5.6373 23 1 -2.7943 -1.3356 -5.0682 24 1 -1.2318 -0.4394 -6.6921 25 1 -1.2654 -2.8189 -6.2270 26 1 -0.3633 -0.0187 1.0274 27 1 -0.3634 0.8991 -0.4976 28 1 -0.3633 -0.8806 -0.5300 29 1 5.1244 -1.8143 -1.0357 30 1 5.6536 -1.0897 0.5015 31 1 4.6101 -2.5316 0.5099 32 1 1.7448 -2.8124 2.1499 33 1 0.2908 -2.0954 1.4137 34 1 -0.9089 -5.2810 0.1760 35 1 -1.2587 -3.5369 0.2610 36 1 0.9343 -4.8942 -1.3746 37 1 -0.4989 -4.0388 -1.9998 38 1 0.6986 0.3408 -5.1432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408320465.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:00 Heat of formation + Delta-G solvation = -8.434145 kcal Electronic energy + Delta-G solvation = -23690.443407 eV Core-core repulsion = 20341.607511 eV Total energy + Delta-G solvation = -3348.835896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.26630 -40.28512 -38.34996 -35.20745 -34.51420 -33.99102 -33.64473 -30.92592 -29.24702 -28.49217 -27.72322 -27.23161 -24.64309 -22.97782 -21.34977 -20.98621 -19.86964 -18.50847 -17.84595 -17.45560 -17.06086 -16.42580 -16.13793 -15.88039 -15.58869 -15.54089 -15.16752 -14.47409 -14.36591 -14.19409 -13.77703 -13.65030 -13.29501 -13.24520 -13.11756 -12.93333 -12.81241 -12.61921 -12.49507 -12.19655 -12.09921 -11.87525 -11.48654 -11.18072 -10.93745 -10.79346 -10.15914 -9.74441 -8.78437 -8.53755 -7.94312 -6.69418 1.23542 1.40151 1.42441 1.51789 2.00401 2.27071 2.30466 2.62812 2.87208 3.08040 3.75623 3.92017 3.98236 4.11249 4.21244 4.34158 4.38655 4.49433 4.51258 4.62008 4.65249 4.72946 4.74106 4.79572 4.80692 4.98406 5.05337 5.10314 5.19683 5.35080 5.44553 5.49960 5.83131 6.04163 6.20580 6.27322 6.51040 6.79783 6.99784 7.08958 7.58992 8.62050 8.83920 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.008791 C = 0.006648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.222529 B = 3184.209709 C = 4210.661994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.137 3.863 3 N -0.351 5.351 4 N -0.485 5.485 5 H 0.439 0.561 6 C 0.070 3.930 7 C -0.078 4.078 8 C -0.202 4.202 9 C 0.196 3.804 10 H 0.066 0.934 11 C 0.064 3.936 12 O -0.389 6.389 13 C 0.051 3.949 14 C 0.083 3.917 15 N -0.645 5.645 16 C 0.552 3.448 17 O -0.573 6.573 18 C -0.570 4.570 19 H 0.085 0.915 20 C 0.039 3.961 21 N -0.819 5.819 22 Si 0.978 3.022 23 H -0.257 1.257 24 H -0.284 1.284 25 H -0.256 1.256 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.048 0.952 34 H 0.129 0.871 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.570 -7.242 9.240 11.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.030 4.030 3 N -0.175 5.175 4 N -0.195 5.195 5 H 0.283 0.717 6 C -0.057 4.057 7 C -0.137 4.137 8 C -0.213 4.213 9 C 0.091 3.909 10 H 0.084 0.916 11 C -0.014 4.014 12 O -0.307 6.307 13 C -0.026 4.026 14 C -0.041 4.041 15 N -0.384 5.384 16 C 0.357 3.643 17 O -0.455 6.455 18 C -0.607 4.607 19 H 0.103 0.897 20 C -0.176 4.176 21 N -0.449 5.449 22 Si 0.799 3.201 23 H -0.181 1.181 24 H -0.210 1.210 25 H -0.180 1.180 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.133 0.867 33 H 0.066 0.934 34 H 0.147 0.853 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.096 -5.457 9.258 10.949 hybrid contribution -0.134 0.040 -1.459 1.465 sum 1.961 -5.418 7.799 9.697 Atomic orbital electron populations 1.20183 0.88183 1.02269 1.01472 1.21735 0.96280 0.90684 0.94320 1.76947 0.87951 1.23392 1.29206 1.45665 1.06368 1.04797 1.62712 0.71657 1.21026 0.97226 0.85278 1.02184 1.20428 0.92134 0.98169 1.02940 1.19235 0.91983 0.94754 1.15362 1.19770 0.92682 0.91249 0.87201 0.91583 1.22983 0.96797 0.84715 0.96867 1.87858 1.58749 1.32040 1.52098 1.23102 0.90391 1.03498 0.85645 1.22291 0.96692 0.85894 0.99207 1.48301 1.48041 1.18904 1.23121 1.18247 0.83726 0.81486 0.80874 1.90676 1.48897 1.30837 1.75120 1.21422 1.17172 1.16775 1.05283 0.89676 1.26674 0.96973 0.93042 1.00882 1.70172 1.32921 1.13901 1.27913 0.85357 0.78862 0.78788 0.77087 1.18130 1.20961 1.17977 0.89730 0.93861 0.91220 0.91666 0.88680 0.88713 0.86674 0.93400 0.85282 0.93320 0.92134 0.88820 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.71 8.31 71.24 0.59 -2.12 16 2 C 0.14 6.29 4.77 43.10 0.21 6.49 16 3 N -0.35 -16.30 12.70 -47.39 -0.60 -16.90 16 4 N -0.48 -18.64 7.36 -48.00 -0.35 -18.99 16 5 H 0.44 13.45 8.96 -213.33 -1.91 11.54 16 6 C 0.07 2.59 7.17 41.41 0.30 2.89 16 7 C -0.08 -2.05 10.05 71.24 0.72 -1.34 16 8 C -0.20 -8.37 3.03 -20.15 -0.06 -8.43 16 9 C 0.20 7.33 3.22 44.22 0.14 7.47 16 10 H 0.07 2.35 6.85 -2.39 -0.02 2.33 16 11 C 0.06 1.99 6.24 72.08 0.45 2.44 16 12 O -0.39 -11.62 10.74 -148.98 -1.60 -13.22 16 13 C 0.05 1.40 6.98 72.08 0.50 1.91 16 14 C 0.08 2.81 6.56 86.35 0.57 3.38 16 15 N -0.64 -27.38 2.55 -802.74 -2.05 -29.43 16 16 C 0.55 29.30 5.06 86.36 0.44 29.74 16 17 O -0.57 -34.10 10.04 -4.31 -0.04 -34.15 16 18 C -0.57 -30.36 8.83 24.83 0.22 -30.14 16 19 H 0.09 4.08 5.78 -2.91 -0.02 4.07 16 20 C 0.04 2.12 5.50 85.30 0.47 2.59 16 21 N -0.82 -49.14 11.87 21.83 0.26 -48.88 16 22 Si 0.98 40.64 29.56 68.60 2.03 42.66 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H 0.08 2.99 7.81 -2.39 -0.02 2.97 16 27 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.07 3.25 5.26 -2.38 -0.01 3.23 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 31 H 0.09 2.14 7.20 -2.39 -0.02 2.13 16 32 H 0.12 2.99 8.14 -2.38 -0.02 2.97 16 33 H 0.05 1.56 6.32 -2.38 -0.02 1.55 16 34 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 35 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.09 3.29 5.43 -2.38 -0.01 3.28 16 38 H 0.27 14.95 8.29 -92.70 -0.77 14.18 16 Total: -1.00 -75.44 300.74 1.37 -74.07 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: -0.81 Total: 29.97 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 4.54 Total: 14.87 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -2.74 Total: -114.21 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -1.64 Total: -47.37 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.66 kcal Total: -75.44 1.37 -74.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408320465.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.637 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds