Wall clock time and date at job start Tue Mar 31 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99888 * 2 1 4 4 O 1.42901 * 109.46931 * 135.00110 * 3 2 1 5 5 C 1.42899 * 114.00026 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47153 * 180.02562 * 5 4 3 7 7 O 1.21293 * 120.00109 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.39471 * 119.99891 * 179.97438 * 8 6 5 10 10 C 1.36110 * 126.21626 * 0.14378 * 9 8 6 11 11 C 1.39762 * 107.82869 * 180.26709 * 10 9 8 12 12 C 1.50694 * 125.84077 * 179.72419 * 11 10 9 13 13 N 1.30855 * 108.31847 * 359.75600 * 11 10 9 14 14 N 1.35266 * 126.21450 * 180.02562 * 9 8 6 15 15 C 1.46491 * 126.04623 * 359.97438 * 14 9 8 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 9 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99985 * 180.27663 * 18 16 15 20 20 Si 1.86800 * 119.99777 * 0.28166 * 18 16 15 21 21 H 1.48498 * 109.47109 * 89.99834 * 20 18 16 22 22 H 1.48507 * 109.46754 * 209.99574 * 20 18 16 23 23 H 1.48498 * 109.47278 * 329.99405 * 20 18 16 24 24 H 1.08003 * 119.99938 * 180.02562 * 1 2 3 25 25 H 1.08005 * 120.00109 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00153 * 180.02562 * 2 1 3 27 27 H 1.09003 * 109.47212 * 15.00408 * 3 2 1 28 28 H 1.08993 * 109.47423 * 255.00034 * 3 2 1 29 29 H 1.08994 * 109.47803 * 59.99622 * 5 4 3 30 30 H 1.09002 * 109.46735 * 299.99294 * 5 4 3 31 31 H 0.97004 * 120.00013 * 359.97438 * 8 6 5 32 32 H 1.07999 * 126.09101 * 0.05355 * 10 9 8 33 33 H 1.09003 * 109.47188 * 270.01578 * 12 11 10 34 34 H 1.08998 * 109.47119 * 30.01737 * 12 11 10 35 35 H 1.09003 * 109.47108 * 150.01312 * 12 11 10 36 36 H 1.09004 * 109.47166 * 149.71543 * 15 14 9 37 37 H 1.08994 * 109.47507 * 29.71250 * 15 14 9 38 38 H 0.96996 * 119.99730 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9077 2.4352 1.0329 6 6 4.9941 2.2567 2.0620 7 8 5.0898 1.2101 2.6675 8 7 5.8593 3.2600 2.3095 9 6 6.8644 3.0949 3.2623 10 6 7.0884 1.9798 4.0100 11 6 8.1831 2.2345 4.8408 12 6 8.7740 1.2745 5.8408 13 7 8.6066 3.4494 4.6022 14 7 7.7950 4.0131 3.6096 15 6 7.9271 5.3606 3.0503 16 6 8.8484 5.3216 1.8584 17 1 9.2909 4.3865 1.5482 18 6 9.1215 6.4787 1.1600 19 7 9.9211 6.4438 0.1165 20 14 8.3556 8.0960 1.6961 21 1 9.2509 8.7683 2.6716 22 1 8.1679 8.9715 0.5114 23 1 7.0392 7.8338 2.3314 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3854 2.1161 0.2661 28 1 2.4754 1.4868 -0.9926 29 1 3.2678 3.2694 1.3205 30 1 4.3580 2.6407 0.0617 31 1 5.7830 4.0969 1.8250 32 1 6.5193 1.0628 3.9710 33 1 8.2830 1.4061 6.8050 34 1 8.6257 0.2518 5.4941 35 1 9.8410 1.4710 5.9465 36 1 8.3392 6.0290 3.8064 37 1 6.9470 5.7231 2.7403 38 1 10.1135 7.2578 -0.3745 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520515051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:50 Heat of formation + Delta-G solvation = 1.275086 kcal Electronic energy + Delta-G solvation = -21095.518843 eV Core-core repulsion = 17747.103972 eV Total energy + Delta-G solvation = -3348.414872 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.47925 -40.72554 -38.79439 -36.31376 -35.56919 -34.76731 -34.00004 -31.33752 -30.59338 -28.80320 -28.02103 -26.47282 -24.40765 -22.98424 -21.32940 -21.14331 -20.60405 -19.26497 -18.56963 -18.22186 -17.50499 -17.19216 -16.73055 -16.57716 -16.01220 -15.92410 -15.42587 -15.03964 -14.85197 -14.50158 -14.14536 -14.11376 -13.77682 -13.52500 -13.21659 -13.19831 -13.14810 -12.90203 -12.57460 -12.12788 -11.88079 -11.84853 -11.78997 -11.49473 -11.01111 -10.92660 -10.90044 -10.24846 -9.63905 -9.11319 -8.42242 -6.55325 0.72381 1.04637 1.32158 1.36658 1.38478 1.47284 1.57643 2.00344 2.05365 2.25011 2.89474 2.95896 3.46260 3.76270 4.05932 4.14593 4.18670 4.20827 4.26177 4.45470 4.48203 4.56541 4.62674 4.65012 4.83532 4.88176 4.92635 5.00277 5.12147 5.18077 5.20635 5.68038 5.70780 5.85600 5.95623 6.02236 6.19727 6.34584 6.49351 6.89979 6.97506 7.09690 8.74230 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.004621 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.395981 B = 6057.739933 C = 7759.197443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.083 3.917 4 O -0.393 6.393 5 C 0.058 3.942 6 C 0.516 3.484 7 O -0.531 6.531 8 N -0.635 5.635 9 C 0.303 3.697 10 C -0.309 4.309 11 C 0.061 3.939 12 C -0.062 4.062 13 N -0.327 5.327 14 N -0.365 5.365 15 C 0.237 3.763 16 C -0.555 4.555 17 H 0.021 0.979 18 C 0.024 3.976 19 N -0.935 5.935 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.229 1.229 24 H 0.115 0.885 25 H 0.113 0.887 26 H 0.106 0.894 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.426 0.574 32 H 0.165 0.835 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 -5.536 1.006 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.007 3.993 4 O -0.312 6.312 5 C -0.022 4.022 6 C 0.304 3.696 7 O -0.405 6.405 8 N -0.285 5.285 9 C 0.081 3.919 10 C -0.341 4.341 11 C -0.104 4.104 12 C -0.120 4.120 13 N -0.152 5.152 14 N -0.150 5.150 15 C 0.118 3.882 16 C -0.593 4.593 17 H 0.040 0.960 18 C -0.176 4.176 19 N -0.573 5.573 20 Si 0.773 3.227 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.152 1.152 24 H 0.133 0.867 25 H 0.131 0.869 26 H 0.124 0.876 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.131 0.869 31 H 0.264 0.736 32 H 0.182 0.818 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.829 -5.334 1.585 18.677 hybrid contribution -0.058 0.663 -0.915 1.131 sum -17.887 -4.671 0.670 18.499 Atomic orbital electron populations 1.24060 0.94933 1.03554 0.97687 1.22777 0.96356 0.98005 1.02444 1.21842 0.88150 0.96910 0.92374 1.87981 1.45546 1.35771 1.61922 1.22191 0.91932 0.90100 0.97928 1.21169 0.82217 0.82257 0.83934 1.90641 1.72021 1.27822 1.50017 1.42766 1.27968 1.19549 1.38250 1.18230 0.88662 0.91567 0.93427 1.21492 1.06104 1.00452 1.06015 1.22879 0.95259 0.93500 0.98771 1.20238 1.00589 0.95703 0.95496 1.77305 1.17298 1.11698 1.08885 1.48837 1.22202 1.13429 1.30563 1.19798 0.98628 0.76405 0.93413 1.21229 1.30047 0.95571 1.12478 0.96036 1.25850 0.94707 1.03104 0.93944 1.70036 1.36655 1.30536 1.20033 0.85667 0.80684 0.77616 0.78719 1.19529 1.19772 1.15177 0.86719 0.86889 0.87634 0.90345 0.90578 0.85824 0.86869 0.73579 0.81808 0.88841 0.89061 0.90863 0.93053 0.91002 0.91628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 14.31 67.78 0.97 -1.06 16 2 C -0.18 -2.95 9.89 25.65 0.25 -2.69 16 3 C 0.08 1.32 6.35 71.23 0.45 1.78 16 4 O -0.39 -9.50 9.86 -129.95 -1.28 -10.78 16 5 C 0.06 1.15 6.42 71.24 0.46 1.61 16 6 C 0.52 15.94 7.87 87.66 0.69 16.63 16 7 O -0.53 -20.62 13.63 15.97 0.22 -20.41 16 8 N -0.64 -21.02 5.41 -308.55 -1.67 -22.69 16 9 C 0.30 12.72 7.66 131.32 1.01 13.73 16 10 C -0.31 -12.85 9.58 22.14 0.21 -12.64 16 11 C 0.06 2.47 7.21 43.07 0.31 2.78 16 12 C -0.06 -1.76 10.44 71.23 0.74 -1.02 16 13 N -0.33 -15.28 12.56 -47.45 -0.60 -15.88 16 14 N -0.37 -16.87 3.60 -348.73 -1.26 -18.13 16 15 C 0.24 10.86 5.08 85.64 0.43 11.30 16 16 C -0.56 -30.83 9.94 25.60 0.25 -30.58 16 17 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 18 C 0.02 1.31 5.47 84.66 0.46 1.77 16 19 N -0.93 -55.18 13.96 21.45 0.30 -54.88 16 20 Si 0.95 38.62 27.47 68.60 1.88 40.51 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.23 -7.90 6.54 99.48 0.65 -7.25 16 24 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 25 H 0.11 1.02 7.90 -2.91 -0.02 1.00 16 26 H 0.11 1.95 8.06 -2.91 -0.02 1.93 16 27 H 0.08 0.90 7.86 -2.39 -0.02 0.88 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.43 11.85 7.96 -92.70 -0.74 11.11 16 32 H 0.16 6.75 5.83 -2.91 -0.02 6.74 16 33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.33 7.58 -2.38 -0.02 2.32 16 37 H 0.07 2.79 6.54 -2.39 -0.02 2.78 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -78.32 332.46 4.12 -74.20 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.28 Total: 26.45 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 6.25 Total: 1.61 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -3.22 Total: -111.57 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -1.06 Total: -31.19 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.88 Total: 40.51 kcal Total: -78.32 4.12 -74.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520515051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.475 kcal (2) G-P(sol) polarization free energy of solvation -78.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds