Wall clock time and date at job start Tue Mar 31 2020 01:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39756 * 125.83453 * 2 1 4 4 C 1.36108 * 107.82674 * 179.79902 * 3 2 1 5 5 N 1.39470 * 126.21784 * 180.26703 * 4 3 2 6 6 C 1.34777 * 120.00397 * 0.13735 * 5 4 3 7 7 O 1.21292 * 119.99192 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00638 * 180.02562 * 6 5 4 9 9 H 1.08997 * 110.45348 * 302.61051 * 8 6 5 10 10 C 1.54505 * 110.51079 * 180.02562 * 8 6 5 11 11 C 1.54484 * 104.05970 * 241.35362 * 10 8 6 12 12 O 1.44429 * 104.80212 * 23.97926 * 11 10 8 13 13 C 1.44423 * 105.27533 * 319.48819 * 12 11 10 14 14 N 1.35260 * 107.56682 * 0.38646 * 4 3 2 15 15 C 1.46506 * 126.04862 * 179.88084 * 14 4 3 16 16 C 1.50702 * 109.46851 * 269.71545 * 15 14 4 17 17 H 1.07998 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.37881 * 119.99982 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99617 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99935 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47291 * 59.99738 * 20 18 16 22 22 H 1.48506 * 109.46846 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47327 * 299.99974 * 20 18 16 24 24 N 1.30849 * 125.83942 * 180.02562 * 2 1 3 25 25 H 1.08998 * 109.46804 * 269.97640 * 1 2 3 26 26 H 1.08993 * 109.47512 * 29.98280 * 1 2 3 27 27 H 1.08998 * 109.46788 * 149.98174 * 1 2 3 28 28 H 1.07996 * 126.08844 * 0.06712 * 3 2 1 29 29 H 0.97004 * 120.00278 * 180.14846 * 5 4 3 30 30 H 1.08997 * 110.51360 * 359.97438 * 10 8 6 31 31 H 1.09004 * 110.51372 * 122.57649 * 10 8 6 32 32 H 1.08995 * 110.37033 * 142.81142 * 11 10 8 33 33 H 1.09001 * 110.37293 * 265.15216 * 11 10 8 34 34 H 1.09007 * 110.36967 * 281.67998 * 13 12 11 35 35 H 1.08992 * 110.36930 * 159.34390 * 13 12 11 36 36 H 1.08994 * 109.46947 * 29.70966 * 15 14 4 37 37 H 1.08997 * 109.47271 * 149.71482 * 15 14 4 38 38 H 0.96998 * 119.99644 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1330 0.0000 4 6 3.6196 0.7123 0.0045 5 7 4.7512 1.5276 0.0113 6 6 4.6156 2.8685 0.0167 7 8 3.5095 3.3661 0.0162 8 6 5.8382 3.7495 0.0235 9 1 6.4669 3.5220 0.8843 10 6 5.4314 5.2401 0.0295 11 6 6.0285 5.7974 -1.2817 12 8 6.1611 4.6471 -2.1450 13 6 6.6329 3.5825 -1.2906 14 7 3.6093 -0.6403 -0.0014 15 6 4.7871 -1.5115 -0.0019 16 6 5.1908 -1.8096 -1.4229 17 1 4.6262 -1.3923 -2.2435 18 6 6.2803 -2.6161 -1.6753 19 7 6.9675 -3.1247 -0.6759 20 14 6.7802 -2.9862 -3.4366 21 1 7.1034 -1.7171 -4.1366 22 1 7.9735 -3.8702 -3.4371 23 1 5.6608 -3.6662 -4.1365 24 7 2.2732 -1.0607 -0.0005 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3634 0.8901 -0.5135 27 1 -0.3633 -0.8898 -0.5141 28 1 1.9901 2.1597 0.0010 29 1 5.6358 1.1296 0.0120 30 1 4.3460 5.3397 0.0272 31 1 5.8592 5.7493 0.8931 32 1 5.3531 6.5289 -1.7253 33 1 7.0043 6.2453 -1.0940 34 1 7.7015 3.6909 -1.1043 35 1 6.4219 2.6128 -1.7411 36 1 5.6085 -1.0122 0.5120 37 1 4.5501 -2.4433 0.5116 38 1 7.7342 -3.6917 -0.8535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522746486.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:14 Heat of formation + Delta-G solvation = -7.187573 kcal Electronic energy + Delta-G solvation = -21967.955034 eV Core-core repulsion = 18619.173194 eV Total energy + Delta-G solvation = -3348.781840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.02881 -39.97981 -38.25351 -34.79243 -33.78602 -32.44448 -32.05826 -29.72499 -29.05314 -27.99297 -26.04588 -24.02082 -22.98889 -22.47206 -20.68356 -19.74650 -19.13919 -17.29055 -16.83389 -16.69776 -16.22489 -16.04241 -15.28618 -14.89718 -14.76766 -14.28191 -13.98900 -13.93366 -12.89479 -12.87225 -12.77080 -12.50838 -12.21240 -12.05371 -11.78579 -11.62424 -11.58238 -11.51974 -11.11391 -11.09536 -10.88291 -10.40816 -10.34416 -10.13877 -9.84187 -9.80714 -9.44062 -8.73261 -7.92970 -7.45252 -6.35017 -4.43609 2.21801 2.76630 3.08023 3.17907 3.22338 3.27406 3.57695 3.76342 3.83698 4.21446 4.23479 4.55980 4.70220 4.93317 4.98308 4.99301 5.18494 5.36031 5.38098 5.51360 5.57091 5.64280 5.66723 5.97814 6.02618 6.15907 6.19191 6.25671 6.42198 6.59238 6.66649 6.81559 7.02618 7.50197 7.56836 7.61188 7.78015 7.89340 8.27407 8.60710 8.69725 9.24191 10.72055 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011888 B = 0.006542 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.810398 B = 4278.686810 C = 6050.417392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.300 3.700 5 N -0.639 5.639 6 C 0.529 3.471 7 O -0.509 6.509 8 C -0.141 4.141 9 H 0.116 0.884 10 C -0.146 4.146 11 C 0.045 3.955 12 O -0.368 6.368 13 C 0.053 3.947 14 N -0.344 5.344 15 C 0.257 3.743 16 C -0.541 4.541 17 H 0.064 0.936 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.906 3.094 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 N -0.285 5.285 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.161 0.839 29 H 0.416 0.584 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 14.617 2.905 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.078 3.922 5 N -0.286 5.286 6 C 0.315 3.685 7 O -0.383 6.383 8 C -0.163 4.163 9 H 0.134 0.866 10 C -0.184 4.184 11 C -0.032 4.032 12 O -0.287 6.287 13 C -0.025 4.025 14 N -0.130 5.130 15 C 0.139 3.861 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.528 5.528 20 Si 0.732 3.268 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 N -0.110 5.110 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.178 0.822 29 H 0.252 0.748 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.613 13.508 2.726 13.794 hybrid contribution 1.150 0.179 -0.634 1.326 sum 0.537 13.687 2.091 13.856 Atomic orbital electron populations 1.20017 0.87574 1.02464 1.02019 1.22034 0.96528 0.91036 1.01861 1.21259 0.89085 1.00426 1.21883 1.17934 0.88025 0.83366 1.02869 1.42760 1.08275 1.05564 1.71957 1.20243 0.91173 0.81263 0.75835 1.90604 1.26655 1.73501 1.47560 1.22695 0.95755 0.96222 1.01649 0.86596 1.23018 1.04769 0.91971 0.98599 1.23458 1.00119 0.89676 0.89960 1.89195 1.87265 1.20142 1.32079 1.23472 0.97540 0.93169 0.88300 1.49350 1.06546 1.02153 1.54917 1.19614 0.77798 0.89753 0.98920 1.21309 1.13324 1.31998 0.91326 0.91732 1.24930 0.95674 0.94824 0.98196 1.69907 1.19158 1.32591 1.31145 0.86416 0.78112 0.78577 0.83646 1.19889 1.20881 1.19845 1.77356 0.86128 1.21794 1.25748 0.91386 0.91136 0.91490 0.82199 0.74754 0.87974 0.89841 0.88826 0.92162 0.90611 0.88125 0.93881 0.92546 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.01 0.38 -0.56 16 2 C 0.05 1.03 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -6.13 9.58 -39.78 -0.38 -6.51 16 4 C 0.30 6.39 7.66 -153.16 -1.17 5.22 16 5 N -0.64 -11.11 5.23 -11.46 -0.06 -11.17 16 6 C 0.53 8.30 7.03 -10.99 -0.08 8.22 16 7 O -0.51 -9.30 12.41 5.55 0.07 -9.24 16 8 C -0.14 -1.58 3.51 -90.21 -0.32 -1.89 16 9 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.15 -1.45 6.67 -25.16 -0.17 -1.62 16 11 C 0.04 0.44 7.63 37.94 0.29 0.73 16 12 O -0.37 -4.98 11.65 -35.23 -0.41 -5.39 16 13 C 0.05 0.61 7.17 37.93 0.27 0.88 16 14 N -0.34 -8.11 3.60 -61.57 -0.22 -8.33 16 15 C 0.26 6.40 6.01 -5.19 -0.03 6.37 16 16 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 17 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 19 N -0.89 -24.16 13.29 55.43 0.74 -23.43 16 20 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 N -0.28 -6.70 12.56 33.65 0.42 -6.28 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.16 3.24 5.83 -52.49 -0.31 2.94 16 29 H 0.42 6.58 7.96 -40.82 -0.32 6.26 16 30 H 0.10 1.23 6.50 -51.93 -0.34 0.89 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.10 1.31 7.72 -51.93 -0.40 0.90 16 36 H 0.04 1.03 7.49 -51.93 -0.39 0.64 16 37 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -32.16 322.26 -6.96 -39.12 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.11 Total: 6.10 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -2.23 Total: -1.89 kcal Atomic # 7 Polarization: -50.09 SS G_CDS: 0.88 Total: -49.21 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.34 Total: -14.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.16 -6.96 -39.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522746486.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.933 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds