Wall clock time and date at job start Tue Mar 31 2020 01:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35454 * 126.77825 * 2 1 4 4 C 1.41375 * 103.98843 * 180.13992 * 3 2 1 5 5 C 1.50699 * 126.80347 * 179.89039 * 4 3 2 6 6 N 1.46497 * 109.47293 * 94.70827 * 5 4 3 7 7 C 1.34780 * 119.99719 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00108 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99704 * 179.97438 * 7 6 5 10 10 C 1.46498 * 119.99966 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.46847 * 184.79711 * 10 9 7 12 12 C 1.50694 * 115.55031 * 294.81434 * 11 10 9 13 13 H 1.08008 * 119.99906 * 95.20931 * 12 11 10 14 14 C 1.37882 * 120.00284 * 274.93190 * 12 11 10 15 15 N 1.31518 * 119.99808 * 355.41947 * 14 12 11 16 16 Si 1.86800 * 120.00242 * 175.41794 * 14 12 11 17 17 H 1.48502 * 109.47002 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.47091 * 119.99801 * 16 14 12 19 19 H 1.48497 * 109.47138 * 240.00628 * 16 14 12 20 20 C 1.53003 * 117.49932 * 80.48760 * 11 10 9 21 21 C 1.52998 * 117.49502 * 149.14904 * 11 10 9 22 22 N 1.30178 * 106.39472 * 359.62326 * 4 3 2 23 23 O 1.20926 * 111.60711 * 0.24525 * 22 4 3 24 24 H 1.08997 * 109.46957 * 180.29907 * 1 2 3 25 25 H 1.08998 * 109.46829 * 300.30207 * 1 2 3 26 26 H 1.08996 * 109.46839 * 60.30356 * 1 2 3 27 27 H 1.08003 * 128.00188 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.47074 * 334.70705 * 5 4 3 29 29 H 1.09003 * 109.46911 * 214.71137 * 5 4 3 30 30 H 0.96996 * 119.99936 * 0.02562 * 6 5 4 31 31 H 0.97009 * 119.99753 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47219 * 64.80231 * 10 9 7 33 33 H 1.09000 * 109.47241 * 304.79395 * 10 9 7 34 34 H 0.97001 * 119.99858 * 184.99726 * 15 14 12 35 35 H 1.08997 * 117.49622 * 214.99831 * 20 11 10 36 36 H 1.09000 * 117.49928 * 0.02562 * 20 11 10 37 37 H 1.08996 * 117.50254 * 359.97148 * 21 11 10 38 38 H 1.09005 * 117.49689 * 144.97447 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0849 0.0000 4 6 3.6214 0.5373 -0.0034 5 6 4.9211 1.3001 -0.0071 6 7 5.4034 1.4499 1.3681 7 6 6.5574 2.1028 1.6101 8 8 7.1983 2.5669 0.6871 9 7 7.0008 2.2410 2.8753 10 6 8.2549 2.9512 3.1384 11 6 8.5879 2.8627 4.6292 12 6 7.6235 3.5605 5.5532 13 1 6.8218 3.0047 6.0169 14 6 7.7677 4.9073 5.8111 15 7 8.7980 5.5635 5.3235 16 14 6.4999 5.7999 6.8528 17 1 5.4464 4.8434 7.2778 18 1 7.1604 6.3734 8.0529 19 1 5.8852 6.8922 6.0564 20 6 9.2405 1.5734 5.1319 21 6 10.0662 2.8579 5.0236 22 7 3.4764 -0.7564 0.0033 23 8 2.3095 -1.0737 0.0052 24 1 -0.3633 -1.0276 0.0054 25 1 -0.3633 0.5185 0.8873 26 1 -0.3633 0.5091 -0.8927 27 1 2.0345 2.1271 0.0004 28 1 4.7630 2.2851 -0.4460 29 1 5.6604 0.7552 -0.5941 30 1 4.8926 1.0786 2.1043 31 1 6.4896 1.8703 3.6117 32 1 8.1471 3.9972 2.8518 33 1 9.0584 2.4965 2.5591 34 1 8.9390 6.4926 5.5638 35 1 8.9723 1.2300 6.1310 36 1 9.4330 0.7884 4.4006 37 1 10.8014 2.9173 4.2212 38 1 10.3411 3.3598 5.9514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555689032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:15:18 Heat of formation + Delta-G solvation = 29.911643 kcal Electronic energy + Delta-G solvation = -20982.036091 eV Core-core repulsion = 17634.862993 eV Total energy + Delta-G solvation = -3347.173097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -46.02941 -41.01059 -38.60947 -36.76046 -35.02617 -34.62109 -33.98548 -33.80721 -29.13558 -28.59496 -27.67698 -26.49783 -24.10865 -22.95587 -21.90243 -21.33483 -21.24461 -19.34696 -18.72416 -18.30825 -18.01515 -17.15410 -16.76946 -16.49375 -15.82629 -15.69505 -15.20655 -15.09301 -14.77243 -14.44063 -14.14101 -13.93668 -13.78086 -13.56729 -13.40901 -13.16662 -12.91608 -12.85154 -12.32282 -12.15924 -12.02297 -11.67697 -11.39700 -11.16727 -10.93833 -10.46102 -10.38501 -10.28430 -10.04667 -9.67139 -8.08133 -6.22510 0.42940 0.98146 1.42027 1.45566 1.54743 1.92537 2.16053 2.20477 2.43340 2.98904 3.19687 3.31669 3.45163 3.61573 4.08029 4.21322 4.25870 4.27697 4.53253 4.55770 4.62236 4.66332 4.74462 4.78240 4.91792 4.96992 4.98453 5.02448 5.27657 5.29134 5.32611 5.55731 5.60795 5.70570 5.79348 6.02980 6.37768 6.84792 7.12621 7.22837 7.47080 7.58773 8.99055 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019503 B = 0.003663 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.312843 B = 7642.060223 C = 8414.698622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.023 4.023 3 C -0.228 4.228 4 C -0.007 4.007 5 C 0.225 3.775 6 N -0.731 5.731 7 C 0.701 3.299 8 O -0.640 6.640 9 N -0.714 5.714 10 C 0.199 3.801 11 C 0.003 3.997 12 C -0.503 4.503 13 H 0.063 0.937 14 C 0.024 3.976 15 N -0.907 5.907 16 Si 0.951 3.049 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.288 1.288 20 C -0.179 4.179 21 C -0.151 4.151 22 N -0.381 5.381 23 O 0.099 5.901 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.195 0.805 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.407 0.593 31 H 0.407 0.593 32 H 0.026 0.974 33 H 0.035 0.965 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.030 -10.293 -8.363 22.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.250 4.250 4 C -0.165 4.165 5 C 0.100 3.900 6 N -0.389 5.389 7 C 0.401 3.599 8 O -0.523 6.523 9 N -0.367 5.367 10 C 0.074 3.926 11 C 0.003 3.997 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.177 4.177 15 N -0.545 5.545 16 Si 0.777 3.223 17 H -0.185 1.185 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.216 4.216 21 C -0.190 4.190 22 N -0.084 5.084 23 O 0.030 5.970 24 H 0.113 0.887 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.212 0.788 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.242 0.758 31 H 0.242 0.758 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.516 -10.701 -9.254 21.747 hybrid contribution -0.689 1.319 1.151 1.882 sum -17.205 -9.382 -8.103 21.206 Atomic orbital electron populations 1.20606 0.80595 1.06036 1.05819 1.25309 0.98021 0.84875 1.00433 1.22738 0.89923 1.02628 1.09686 1.23493 0.97559 0.90098 1.05345 1.19174 0.88827 0.99062 0.82957 1.44827 1.23707 1.61070 1.09291 1.16050 0.81233 0.79165 0.83495 1.90852 1.59970 1.56787 1.44655 1.44928 1.26187 1.59761 1.05824 1.20443 0.83172 0.93547 0.95422 1.19081 0.93227 0.96680 0.90751 1.20681 1.12886 0.93289 1.27267 0.91869 1.25715 0.96936 0.98308 0.96729 1.70125 1.29416 1.10509 1.44415 0.85614 0.79772 0.78616 0.78255 1.18548 1.21013 1.21443 1.22996 1.06185 0.90827 1.01624 1.22390 0.94893 1.00429 1.01268 1.73910 0.98070 1.16963 1.19435 1.84815 1.11032 1.34293 1.66887 0.88731 0.87455 0.87207 0.78826 0.88775 0.91285 0.75756 0.75781 0.95529 0.94622 0.93205 0.89667 0.89637 0.91241 0.91555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.45 71.24 0.74 0.42 16 2 C -0.02 -0.32 7.49 25.04 0.19 -0.14 16 3 C -0.23 -3.77 11.06 22.40 0.25 -3.52 16 4 C -0.01 -0.17 6.70 43.58 0.29 0.13 16 5 C 0.22 5.91 6.26 85.63 0.54 6.45 16 6 N -0.73 -21.45 5.55 -482.31 -2.68 -24.13 16 7 C 0.70 27.16 8.57 179.05 1.53 28.69 16 8 O -0.64 -29.94 16.34 -3.96 -0.06 -30.00 16 9 N -0.71 -28.11 5.48 -478.54 -2.62 -30.73 16 10 C 0.20 9.27 5.50 86.38 0.48 9.74 16 11 C 0.00 0.16 1.47 -52.93 -0.08 0.08 16 12 C -0.50 -25.66 8.59 25.60 0.22 -25.44 16 13 H 0.06 3.11 7.82 -2.91 -0.02 3.09 16 14 C 0.02 1.26 5.43 84.66 0.46 1.72 16 15 N -0.91 -51.12 12.65 21.45 0.27 -50.85 16 16 Si 0.95 41.92 29.54 68.60 2.03 43.95 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 20 C -0.18 -7.28 9.96 30.62 0.30 -6.98 16 21 C -0.15 -7.02 9.14 30.62 0.28 -6.74 16 22 N -0.38 -9.57 12.07 -49.54 -0.60 -10.17 16 23 O 0.10 2.03 11.20 71.58 0.80 2.83 16 24 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 25 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 27 H 0.19 2.28 8.06 -2.91 -0.02 2.25 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.41 10.17 8.48 -92.71 -0.79 9.38 16 31 H 0.41 14.33 8.35 -92.70 -0.77 13.56 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 34 H 0.26 14.03 8.32 -92.71 -0.77 13.26 16 35 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 37 H 0.07 3.08 8.14 -2.39 -0.02 3.07 16 38 H 0.07 3.32 8.14 -2.38 -0.02 3.30 16 Total: -1.00 -68.31 335.30 1.87 -66.44 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: -0.47 Total: 28.25 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.20 Total: 4.41 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.63 Total: -115.88 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: 0.74 Total: -27.17 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -68.31 1.87 -66.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555689032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.356 kcal (2) G-P(sol) polarization free energy of solvation -68.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds