Wall clock time and date at job start Tue Mar 31 2020 02:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33225 * 126.01720 * 2 1 4 4 C 1.31531 * 109.76410 * 179.97438 * 3 2 1 5 5 O 1.35203 * 125.49378 * 179.97438 * 4 3 2 6 6 N 1.34944 * 109.01523 * 0.02562 * 4 3 2 7 7 H 0.96996 * 126.54620 * 180.02562 * 6 4 3 8 8 C 1.36714 * 126.02144 * 180.02562 * 2 1 3 9 9 C 1.46379 * 126.82491 * 359.97438 * 8 2 1 10 10 O 1.21736 * 120.00041 * 103.45149 * 9 8 2 11 11 N 1.34776 * 120.00218 * 283.44715 * 9 8 2 12 12 C 1.46932 * 120.62756 * 4.65179 * 11 9 8 13 13 C 1.52765 * 109.00648 * 233.58194 * 12 11 9 14 14 C 1.53040 * 109.38257 * 305.58961 * 13 12 11 15 15 C 1.50697 * 109.46083 * 181.25955 * 14 13 12 16 16 H 1.08001 * 120.00478 * 239.93423 * 15 14 13 17 17 C 1.37885 * 119.99993 * 59.92796 * 15 14 13 18 18 N 1.31515 * 119.99891 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99951 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47248 * 90.00573 * 19 17 15 21 21 H 1.48504 * 109.46696 * 210.00163 * 19 17 15 22 22 H 1.48491 * 109.47193 * 330.00070 * 19 17 15 23 23 C 1.53042 * 109.53908 * 61.23993 * 14 13 12 24 24 C 1.46919 * 120.63412 * 184.92679 * 11 9 8 25 25 H 1.09004 * 109.47302 * 90.02216 * 1 2 3 26 26 H 1.09005 * 109.47362 * 210.02300 * 1 2 3 27 27 H 1.08998 * 109.47641 * 330.02504 * 1 2 3 28 28 H 0.96706 * 113.99966 * 90.02557 * 5 4 3 29 29 H 1.08992 * 109.58714 * 353.41622 * 12 11 9 30 30 H 1.08995 * 109.58660 * 113.84749 * 12 11 9 31 31 H 1.08999 * 109.56382 * 185.55616 * 13 12 11 32 32 H 1.09007 * 109.35802 * 65.49727 * 13 12 11 33 33 H 1.09004 * 109.46219 * 301.21693 * 14 13 12 34 34 H 0.96996 * 120.00089 * 179.97438 * 18 17 15 35 35 H 1.08999 * 109.49781 * 178.68557 * 23 14 13 36 36 H 1.08997 * 109.49608 * 58.59082 * 23 14 13 37 37 H 1.08997 * 109.59008 * 246.15743 * 24 11 9 38 38 H 1.09002 * 109.58614 * 6.44486 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2904 1.0776 0.0000 4 6 3.5531 0.7094 0.0006 5 8 4.6148 1.5465 0.0002 6 7 3.6181 -0.6384 0.0004 7 1 4.4243 -1.1778 0.0010 8 6 2.3110 -1.1057 -0.0005 9 6 1.8792 -2.5044 -0.0006 10 8 1.9337 -3.1582 -1.0261 11 7 1.4215 -3.0685 1.1346 12 6 1.2541 -2.2665 2.3543 13 6 2.0071 -2.9403 3.5001 14 6 1.5385 -4.3912 3.6321 15 6 2.2579 -5.0485 4.7816 16 1 2.8730 -5.9188 4.6070 17 6 2.1308 -4.5386 6.0564 18 7 1.3814 -3.4790 6.2692 19 14 3.0230 -5.3530 7.4812 20 1 4.3670 -4.7412 7.6384 21 1 2.2422 -5.1597 8.7296 22 1 3.1691 -6.8054 7.2086 23 6 1.8464 -5.1482 2.3382 24 6 1.0862 -4.4983 1.1778 25 1 -0.3634 -0.0004 -1.0277 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5134 28 1 4.9237 1.7904 0.8836 29 1 1.6567 -1.2667 2.1924 30 1 0.1956 -2.2003 2.6056 31 1 1.8087 -2.4078 4.4302 32 1 3.0766 -2.9210 3.2902 33 1 0.4645 -4.4105 3.8173 34 1 1.2917 -3.1206 7.1660 35 1 1.5337 -6.1873 2.4414 36 1 2.9174 -5.1083 2.1394 37 1 0.0137 -4.6177 1.3311 38 1 1.3758 -4.9700 0.2388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563723576.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:18:32 Heat of formation + Delta-G solvation = -22.404064 kcal Electronic energy + Delta-G solvation = -22328.298848 eV Core-core repulsion = 18978.857171 eV Total energy + Delta-G solvation = -3349.441677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.29028 -39.54851 -37.53619 -36.87823 -33.65781 -33.29648 -31.72606 -30.61936 -30.07313 -27.38405 -26.03106 -23.57647 -22.62002 -22.12852 -21.19130 -19.91913 -19.36995 -18.44965 -17.18001 -16.92438 -16.24742 -15.91304 -15.65221 -14.63783 -14.45377 -14.14999 -13.73636 -13.26678 -13.19880 -12.84377 -12.80270 -12.70285 -12.55726 -12.35848 -12.00780 -11.73451 -11.38992 -11.01214 -10.73058 -10.49580 -10.43746 -10.19065 -10.11579 -9.83837 -9.65609 -9.29006 -9.05929 -8.47425 -8.32858 -8.16473 -6.11194 -4.17629 1.48558 2.07813 2.69264 2.92832 3.22088 3.30013 3.32941 3.38201 3.85073 4.33892 4.65251 4.83862 5.02702 5.18451 5.49941 5.65020 5.69016 5.69325 5.80143 5.84637 5.89358 5.99188 6.01953 6.20514 6.32558 6.37724 6.52588 6.58233 6.74227 6.90886 6.99209 7.15480 7.47568 7.55742 7.69148 7.75582 7.81074 7.94052 8.26371 8.30768 8.85782 9.47989 10.94359 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020345 B = 0.004974 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.940178 B = 5627.658525 C = 6200.265250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.480 5.480 4 C 0.391 3.609 5 O -0.442 6.442 6 N -0.542 5.542 7 H 0.424 0.576 8 C -0.047 4.047 9 C 0.588 3.412 10 O -0.543 6.543 11 N -0.582 5.582 12 C 0.102 3.898 13 C -0.123 4.123 14 C 0.048 3.952 15 C -0.513 4.513 16 H 0.055 0.945 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.405 0.595 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.035 0.965 33 H 0.030 0.970 34 H 0.261 0.739 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.400 6.563 -8.260 10.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.065 4.065 3 N -0.210 5.210 4 C 0.090 3.910 5 O -0.243 6.243 6 N -0.159 5.159 7 H 0.264 0.736 8 C -0.165 4.165 9 C 0.373 3.627 10 O -0.421 6.421 11 N -0.313 5.313 12 C -0.019 4.019 13 C -0.161 4.161 14 C 0.029 3.971 15 C -0.552 4.552 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.161 4.161 24 C -0.010 4.010 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.120 7.178 -9.233 11.749 hybrid contribution 1.596 -1.238 1.451 2.487 sum 2.716 5.940 -7.782 10.160 Atomic orbital electron populations 1.20214 0.86533 1.03605 1.02990 1.20732 0.96492 0.86075 1.03219 1.70129 0.98559 1.30253 1.22102 1.20003 0.87305 0.78514 1.05160 1.84829 1.43467 1.61561 1.34441 1.43495 1.08418 1.07713 1.56258 0.73639 1.20521 0.83773 0.95498 1.16672 1.16800 0.78460 0.83685 0.83759 1.90823 1.56439 1.62968 1.31883 1.48201 1.62430 1.10640 1.10073 1.22039 1.01428 0.93981 0.84499 1.21951 0.97074 1.00082 0.97015 1.18652 0.97096 0.90778 0.90536 1.21184 1.29210 1.12806 0.91960 0.92693 1.24957 0.95198 0.95011 0.98738 1.69823 1.38974 1.22581 1.21593 0.86618 0.79633 0.79925 0.81976 1.20796 1.21176 1.19925 1.22022 0.99061 0.99444 0.95604 1.21818 0.99736 0.78945 1.00514 0.90645 0.90627 0.90133 0.73792 0.91334 0.91360 0.87583 0.94608 0.95206 0.92890 0.91748 0.93028 0.91537 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.23 36.00 0.37 -0.56 16 2 C 0.07 1.01 6.40 -82.54 -0.53 0.48 16 3 N -0.48 -7.30 11.22 -10.84 -0.12 -7.42 16 4 C 0.39 5.21 9.43 -89.60 -0.84 4.37 16 5 O -0.44 -4.53 13.62 -17.31 -0.24 -4.76 16 6 N -0.54 -7.18 6.24 -10.91 -0.07 -7.25 16 7 H 0.42 4.62 8.96 -40.82 -0.37 4.25 16 8 C -0.05 -0.73 5.24 -81.98 -0.43 -1.16 16 9 C 0.59 10.14 7.15 -12.99 -0.09 10.05 16 10 O -0.54 -10.77 16.54 5.16 0.09 -10.68 16 11 N -0.58 -9.87 2.98 -174.68 -0.52 -10.39 16 12 C 0.10 1.76 5.90 -3.93 -0.02 1.73 16 13 C -0.12 -2.57 5.14 -26.83 -0.14 -2.71 16 14 C 0.05 1.08 2.06 -91.73 -0.19 0.89 16 15 C -0.51 -13.12 8.56 -34.44 -0.29 -13.41 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 18 N -0.89 -23.63 11.31 55.43 0.63 -23.00 16 19 Si 0.89 20.23 29.54 -169.99 -5.02 15.21 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 C -0.12 -2.35 5.30 -26.61 -0.14 -2.49 16 24 C 0.11 1.89 6.42 -3.71 -0.02 1.87 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.07 0.92 7.53 -51.93 -0.39 0.53 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.40 2.05 9.06 45.56 0.41 2.46 16 29 H 0.07 1.11 5.80 -51.93 -0.30 0.81 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.11 2.51 6.03 -51.93 -0.31 2.19 16 32 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 33 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.08 1.35 7.03 -51.93 -0.37 0.98 16 LS Contribution 315.53 15.07 4.75 4.75 Total: -1.00 -30.90 315.53 -7.18 -38.08 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -4.25 Total: 4.91 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.43 Total: 0.56 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.08 Total: -48.07 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.15 Total: -15.44 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.90 -7.18 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563723576.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.676 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds