Wall clock time and date at job start Tue Mar 31 2020 02:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39872 * 126.03848 * 2 1 4 4 N 1.30838 * 108.20312 * 179.97438 * 3 2 1 5 5 N 1.40088 * 108.20068 * 359.77854 * 4 3 2 6 6 C 1.46503 * 126.03204 * 180.22797 * 5 4 3 7 7 C 1.50697 * 109.47726 * 305.15993 * 6 5 4 8 8 O 1.21283 * 119.99325 * 359.97438 * 7 6 5 9 9 N 1.34774 * 120.00436 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64427 * 0.02562 * 9 7 6 11 11 C 1.54905 * 104.83318 * 204.09430 * 10 9 7 12 12 C 1.55163 * 101.58425 * 322.99676 * 11 10 9 13 13 O 1.42894 * 110.71720 * 277.13957 * 12 11 10 14 14 C 1.50696 * 110.72462 * 154.03830 * 12 11 10 15 15 H 1.07993 * 120.00306 * 241.45678 * 14 12 11 16 16 C 1.37879 * 119.99568 * 61.45296 * 14 12 11 17 17 N 1.31509 * 120.00425 * 0.02562 * 16 14 12 18 18 Si 1.86809 * 119.99771 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47000 * 0.02562 * 18 16 14 20 20 H 1.48494 * 109.46845 * 120.00157 * 18 16 14 21 21 H 1.48494 * 109.46863 * 240.00079 * 18 16 14 22 22 C 1.47015 * 125.65002 * 179.71883 * 9 7 6 23 23 C 1.34940 * 107.93023 * 0.36844 * 5 4 3 24 24 H 1.09000 * 109.47244 * 270.02167 * 1 2 3 25 25 H 1.08997 * 109.47487 * 30.02471 * 1 2 3 26 26 H 1.09003 * 109.46835 * 150.02971 * 1 2 3 27 27 H 1.08001 * 125.89521 * 359.94624 * 3 2 1 28 28 H 1.09005 * 109.46694 * 65.16147 * 6 5 4 29 29 H 1.08999 * 109.47197 * 185.15258 * 6 5 4 30 30 H 1.08998 * 110.37083 * 322.93873 * 10 9 7 31 31 H 1.09002 * 110.36248 * 85.14935 * 10 9 7 32 32 H 1.09003 * 111.00634 * 81.06519 * 11 10 9 33 33 H 1.09000 * 111.00803 * 204.92071 * 11 10 9 34 34 H 0.96707 * 113.99917 * 298.54211 * 13 12 11 35 35 H 0.97004 * 120.00223 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.88068 * 298.38589 * 22 9 7 37 37 H 1.09004 * 109.88347 * 59.55263 * 22 9 7 38 38 H 1.08002 * 126.13053 * 179.90865 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6705 0.0061 6 6 4.7746 -1.5247 0.0132 7 6 5.6635 -1.1576 -1.1470 8 8 5.3349 -0.2700 -1.9054 9 7 6.8231 -1.8161 -1.3424 10 6 7.3411 -2.9113 -0.5024 11 6 8.8737 -2.8925 -0.7272 12 6 8.9633 -2.5336 -2.2341 13 8 8.7972 -3.7003 -3.0423 14 6 10.2725 -1.8548 -2.5437 15 1 10.2799 -0.8464 -2.9302 16 6 11.4612 -2.5211 -2.3334 17 7 11.4523 -3.7492 -1.8630 18 14 13.0843 -1.6794 -2.7165 19 1 12.8230 -0.3107 -3.2298 20 1 13.9025 -1.5961 -1.4801 21 1 13.8174 -2.4622 -3.7435 22 6 7.7777 -1.5655 -2.4320 23 6 2.3032 -1.0942 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3634 0.8897 -0.5142 26 1 -0.3633 -0.8903 -0.5134 27 1 1.9950 2.1578 -0.0008 28 1 5.3185 -1.3822 0.9470 29 1 4.4733 -2.5685 -0.0760 30 1 7.1092 -2.7272 0.5466 31 1 6.9210 -3.8652 -0.8214 32 1 9.3491 -2.1266 -0.1143 33 1 9.3092 -3.8725 -0.5324 34 1 9.4733 -4.3769 -2.9000 35 1 12.2885 -4.2181 -1.7154 36 1 7.3001 -1.7529 -3.3937 37 1 8.1311 -0.5354 -2.3857 38 1 1.9724 -2.1223 0.0013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592842002.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:49 Heat of formation + Delta-G solvation = -0.229183 kcal Electronic energy + Delta-G solvation = -21669.389762 eV Core-core repulsion = 18320.909661 eV Total energy + Delta-G solvation = -3348.480102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19929 -39.46379 -37.34186 -34.41420 -33.61933 -32.27481 -31.59953 -30.02971 -28.83374 -27.96215 -25.84258 -24.75386 -22.56056 -21.26990 -20.35589 -19.78507 -18.82097 -17.40098 -16.94981 -16.63269 -15.73470 -15.16493 -14.99925 -14.52592 -14.30849 -14.12480 -13.80570 -13.32353 -13.11280 -13.07944 -12.87266 -12.40900 -12.15767 -12.07055 -11.91648 -11.58380 -11.47191 -11.40813 -10.96254 -10.71191 -10.49565 -10.43481 -10.18641 -9.80393 -9.46847 -9.18643 -8.73249 -8.31380 -8.27960 -8.13133 -6.34489 -4.41704 1.91559 2.43295 2.86288 2.87210 3.15986 3.25233 3.29892 3.40368 4.23043 4.48172 4.69303 4.77720 4.93663 4.99537 5.06281 5.23626 5.39586 5.42911 5.61667 5.64456 5.78455 5.81184 5.89507 5.92690 6.09659 6.12916 6.36552 6.59644 6.70073 6.80352 6.85619 7.00532 7.21856 7.27320 7.67850 7.78912 7.94180 7.96059 8.46560 8.61573 9.23850 9.33104 10.73145 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.044066 B = 0.003508 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.252547 B = 7978.792607 C = 8224.162269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.245 4.245 3 C 0.039 3.961 4 N -0.261 5.261 5 N -0.358 5.358 6 C 0.121 3.879 7 C 0.508 3.492 8 O -0.524 6.524 9 N -0.607 5.607 10 C 0.090 3.910 11 C -0.134 4.134 12 C 0.247 3.753 13 O -0.586 6.586 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.072 3.928 17 N -0.896 5.896 18 Si 0.903 3.097 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.281 1.281 22 C 0.125 3.875 23 C 0.051 3.949 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.057 0.943 27 H 0.180 0.820 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.382 0.618 35 H 0.268 0.732 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.707 -0.051 7.363 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.256 4.256 3 C -0.148 4.148 4 N -0.081 5.081 5 N -0.140 5.140 6 C -0.005 4.005 7 C 0.294 3.706 8 O -0.400 6.400 9 N -0.342 5.342 10 C -0.033 4.033 11 C -0.173 4.173 12 C 0.207 3.793 13 O -0.395 6.395 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.731 3.269 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.207 1.207 22 C 0.004 3.996 23 C -0.095 4.095 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.076 0.924 27 H 0.197 0.803 28 H 0.130 0.870 29 H 0.140 0.860 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -13.988 0.923 6.797 15.579 hybrid contribution 0.705 -0.365 0.094 0.799 sum -13.283 0.558 6.891 14.974 Atomic orbital electron populations 1.20012 0.89457 1.01993 1.01209 1.20093 0.96914 0.91938 1.16701 1.23810 0.90112 0.99709 1.01205 1.77521 1.20827 0.88310 1.21470 1.48012 1.04460 1.04848 1.56716 1.21485 0.85151 0.93926 0.99920 1.19978 0.81324 0.82791 0.86554 1.90756 1.72376 1.30353 1.46561 1.48621 1.19687 1.35654 1.30204 1.22597 0.98097 0.89375 0.93193 1.23305 0.89992 1.03404 1.00586 1.19480 0.90575 0.83082 0.86168 1.86139 1.55914 1.30814 1.66595 1.21536 0.90141 1.01140 1.44401 0.91684 1.24982 0.99572 0.94909 0.93550 1.69692 1.27859 1.11134 1.44877 0.86350 0.82659 0.79826 0.78112 1.19554 1.20811 1.20727 1.22084 0.88963 0.99934 0.88663 1.22281 0.83886 1.00021 1.03269 0.92372 0.91993 0.92350 0.80325 0.87009 0.86050 0.92110 0.91649 0.91305 0.89177 0.76729 0.92238 0.92050 0.90880 0.81171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.37 36.01 0.37 -0.20 16 2 C -0.24 -2.92 6.10 -105.05 -0.64 -3.56 16 3 C 0.04 0.53 11.96 -17.36 -0.21 0.33 16 4 N -0.26 -4.47 11.63 30.63 0.36 -4.11 16 5 N -0.36 -5.33 3.40 -62.54 -0.21 -5.54 16 6 C 0.12 1.61 6.00 -5.19 -0.03 1.58 16 7 C 0.51 9.40 7.88 -10.99 -0.09 9.31 16 8 O -0.52 -11.94 16.03 5.56 0.09 -11.85 16 9 N -0.61 -11.51 3.33 -170.52 -0.57 -12.08 16 10 C 0.09 1.48 6.68 -2.53 -0.02 1.46 16 11 C -0.13 -2.74 5.47 -24.58 -0.13 -2.88 16 12 C 0.25 5.78 0.84 -89.93 -0.08 5.71 16 13 O -0.59 -14.22 13.06 -35.23 -0.46 -14.68 16 14 C -0.53 -13.75 8.23 -34.44 -0.28 -14.03 16 15 H 0.06 1.70 7.58 -52.49 -0.40 1.31 16 16 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 17 N -0.90 -22.38 10.67 55.43 0.59 -21.79 16 18 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.13 2.78 6.23 -3.06 -0.02 2.76 16 23 C 0.05 0.61 11.36 -17.23 -0.20 0.41 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 28 H 0.11 1.28 7.85 -51.93 -0.41 0.87 16 29 H 0.12 1.16 8.07 -51.93 -0.42 0.74 16 30 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 33 H 0.09 1.90 7.53 -51.93 -0.39 1.51 16 34 H 0.38 9.25 7.46 45.56 0.34 9.59 16 35 H 0.27 6.41 8.31 -40.82 -0.34 6.08 16 36 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 37 H 0.07 1.69 7.67 -51.93 -0.40 1.29 16 38 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 322.11 15.07 4.85 4.85 Total: -1.00 -31.62 322.11 -6.35 -37.97 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -4.57 Total: 9.59 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -1.41 Total: 2.62 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.17 Total: -43.53 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.37 Total: -26.53 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.62 -6.35 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842002.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.741 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds