Wall clock time and date at job start Tue Mar 31 2020 02:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39866 * 126.04169 * 2 1 4 4 N 1.30843 * 108.20566 * 179.97438 * 3 2 1 5 5 N 1.40079 * 108.20476 * 0.02562 * 4 3 2 6 6 C 1.46499 * 126.03928 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.46992 * 305.02348 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47021 * 125.64749 * 0.03050 * 9 7 6 11 11 C 1.54322 * 107.26600 * 181.01771 * 10 9 7 12 12 C 1.55157 * 102.94411 * 22.19368 * 11 10 9 13 13 O 1.42903 * 111.00501 * 82.61018 * 12 11 10 14 14 C 1.50703 * 111.00502 * 206.41997 * 12 11 10 15 15 H 1.07997 * 120.00082 * 118.54664 * 14 12 11 16 16 C 1.37879 * 119.99834 * 298.54620 * 14 12 11 17 17 N 1.31508 * 120.00406 * 0.02562 * 16 14 12 18 18 Si 1.86809 * 119.99717 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.46609 * 90.00054 * 18 16 14 20 20 H 1.48497 * 109.46909 * 210.00138 * 18 16 14 21 21 H 1.48498 * 109.47080 * 330.00144 * 18 16 14 22 22 C 1.47426 * 125.64500 * 179.71753 * 9 7 6 23 23 C 1.34950 * 107.92760 * 0.25985 * 5 4 3 24 24 H 1.08998 * 109.47392 * 89.97333 * 1 2 3 25 25 H 1.09001 * 109.47106 * 209.97431 * 1 2 3 26 26 H 1.09003 * 109.47075 * 329.96992 * 1 2 3 27 27 H 1.08000 * 125.89696 * 359.97438 * 3 2 1 28 28 H 1.09002 * 109.47391 * 185.02338 * 6 5 4 29 29 H 1.09001 * 109.46813 * 65.02395 * 6 5 4 30 30 H 1.08997 * 109.87932 * 300.43017 * 10 9 7 31 31 H 1.08990 * 109.88539 * 61.60408 * 10 9 7 32 32 H 1.09002 * 110.72017 * 140.55606 * 11 10 9 33 33 H 1.09003 * 110.72573 * 263.64905 * 11 10 9 34 34 H 0.96701 * 114.00392 * 61.44974 * 13 12 11 35 35 H 0.97005 * 120.00262 * 180.02562 * 17 16 14 36 36 H 1.08999 * 110.36516 * 274.75469 * 22 9 7 37 37 H 1.08997 * 110.36737 * 37.07001 * 22 9 7 38 38 H 1.07997 * 126.13103 * 179.73874 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1309 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0003 7 6 5.6582 -1.1551 -1.1632 8 8 5.3266 -0.2653 -1.9177 9 7 6.8174 -1.8126 -1.3646 10 6 7.3383 -2.9060 -0.5311 11 6 8.6981 -3.3279 -1.1264 12 6 9.1326 -2.0710 -1.9256 13 8 9.7474 -1.1064 -1.0690 14 6 10.0508 -2.4435 -3.0611 15 1 9.7600 -2.2372 -4.0806 16 6 11.2619 -3.0478 -2.7985 17 7 11.6158 -3.2994 -1.5572 18 14 12.3997 -3.5102 -4.2061 19 1 13.3112 -2.3750 -4.4991 20 1 13.1996 -4.7018 -3.8249 21 1 11.5926 -3.8213 -5.4132 22 6 7.7697 -1.5589 -2.4610 23 6 2.3032 -1.0942 -0.0062 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 1.9950 2.1577 -0.0004 28 1 4.4728 -2.5684 -0.0899 29 1 5.3227 -1.3843 0.9319 30 1 7.4738 -2.5589 0.4932 31 1 6.6475 -3.7487 -0.5509 32 1 9.4142 -3.5480 -0.3346 33 1 8.5801 -4.1867 -1.7873 34 1 10.5524 -1.4216 -0.6356 35 1 12.4681 -3.7242 -1.3724 36 1 7.4775 -2.1128 -3.3531 37 1 7.8241 -0.4919 -2.6769 38 1 1.9724 -2.1223 -0.0120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:22:59 Heat of formation + Delta-G solvation = -23.461098 kcal Electronic energy + Delta-G solvation = -21690.790587 eV Core-core repulsion = 18341.303074 eV Total energy + Delta-G solvation = -3349.487513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.18896 -40.93167 -38.95793 -36.11745 -34.63689 -34.23331 -32.51206 -31.66494 -30.24433 -29.25355 -27.15980 -26.11414 -24.01076 -22.37228 -21.54396 -21.25730 -20.21903 -19.11553 -18.36619 -17.86069 -16.94420 -16.87308 -16.42588 -16.20864 -15.79884 -15.20693 -14.95488 -14.85632 -14.32774 -14.01689 -13.92972 -13.81800 -13.60156 -13.44930 -13.24936 -13.04593 -13.01176 -12.67339 -12.64958 -12.48416 -12.26289 -11.85257 -11.41900 -11.29638 -11.14907 -10.66361 -10.33745 -10.16744 -9.63096 -9.20759 -8.25371 -6.40030 0.94772 1.40865 1.44144 1.47105 1.50679 1.53051 1.94028 2.06579 2.39150 2.99332 3.35751 3.68315 3.77930 3.99071 3.99217 4.09784 4.18073 4.32616 4.39509 4.52597 4.57092 4.62566 4.69159 4.85949 4.95681 5.04780 5.15840 5.21823 5.28395 5.35770 5.44549 5.55437 5.76455 5.77462 6.07261 6.13796 6.53844 6.63500 6.81225 7.05559 7.30112 7.38832 8.80313 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.050341 B = 0.003435 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.068231 B = 8150.417054 C = 8239.235052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.254 4.254 3 C 0.030 3.970 4 N -0.327 5.327 5 N -0.373 5.373 6 C 0.128 3.872 7 C 0.503 3.497 8 O -0.578 6.578 9 N -0.608 5.608 10 C 0.099 3.901 11 C -0.126 4.126 12 C 0.233 3.767 13 O -0.595 6.595 14 C -0.563 4.563 15 H 0.051 0.949 16 C 0.039 3.961 17 N -0.904 5.904 18 Si 0.958 3.042 19 H -0.282 1.282 20 H -0.276 1.276 21 H -0.272 1.272 22 C 0.127 3.873 23 C 0.052 3.948 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.196 0.804 28 H 0.172 0.828 29 H 0.129 0.871 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.378 0.622 35 H 0.271 0.729 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.994 -3.682 7.185 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.265 4.265 3 C -0.157 4.157 4 N -0.148 5.148 5 N -0.156 5.156 6 C 0.004 3.996 7 C 0.291 3.709 8 O -0.458 6.458 9 N -0.341 5.341 10 C -0.022 4.022 11 C -0.165 4.165 12 C 0.193 3.807 13 O -0.403 6.403 14 C -0.601 4.601 15 H 0.070 0.930 16 C -0.163 4.163 17 N -0.543 5.543 18 Si 0.784 3.216 19 H -0.208 1.208 20 H -0.201 1.201 21 H -0.197 1.197 22 C 0.004 3.996 23 C -0.092 4.092 24 H 0.080 0.920 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.213 0.787 28 H 0.189 0.811 29 H 0.147 0.853 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.227 0.773 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -16.259 -2.644 6.736 17.797 hybrid contribution 0.963 -0.422 -0.845 1.349 sum -15.296 -3.066 5.891 16.676 Atomic orbital electron populations 1.20064 0.86944 1.03263 1.01949 1.20583 0.98652 0.91237 1.16071 1.24312 0.89874 1.01379 1.00130 1.77454 1.22828 0.90344 1.24154 1.48173 1.05699 1.04266 1.57461 1.21671 0.84377 0.95975 0.97614 1.20987 0.81303 0.81471 0.87135 1.90725 1.73509 1.32301 1.49219 1.48654 1.19552 1.36408 1.29488 1.22385 0.96428 0.88928 0.94448 1.22948 0.94536 0.98805 1.00202 1.19828 0.87769 0.85067 0.88045 1.86141 1.44842 1.44525 1.64807 1.21651 1.04197 1.40928 0.93365 0.93044 1.25563 0.98490 0.94040 0.98182 1.69762 1.22966 1.42434 1.19096 0.85567 0.78669 0.77729 0.79682 1.20813 1.20073 1.19710 1.22153 0.88457 0.99223 0.89720 1.23048 0.82666 1.01983 1.01483 0.92022 0.90460 0.91170 0.78687 0.81057 0.85299 0.90295 0.87860 0.90459 0.91617 0.77259 0.91918 0.90860 0.94457 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.37 71.23 0.74 -0.15 16 2 C -0.25 -5.55 6.10 -20.14 -0.12 -5.67 16 3 C 0.03 0.81 11.96 85.23 1.02 1.83 16 4 N -0.33 -11.39 11.64 -57.02 -0.66 -12.06 16 5 N -0.37 -10.52 3.40 -351.78 -1.20 -11.71 16 6 C 0.13 3.08 6.18 85.63 0.53 3.61 16 7 C 0.50 18.36 7.88 87.66 0.69 19.05 16 8 O -0.58 -27.18 15.96 -3.03 -0.05 -27.23 16 9 N -0.61 -22.51 3.32 -811.39 -2.70 -25.21 16 10 C 0.10 2.99 6.48 86.73 0.56 3.55 16 11 C -0.13 -4.99 5.37 31.78 0.17 -4.82 16 12 C 0.23 11.10 0.87 -10.07 -0.01 11.09 16 13 O -0.59 -30.44 13.17 -148.98 -1.96 -32.41 16 14 C -0.56 -29.32 8.27 25.60 0.21 -29.10 16 15 H 0.05 2.73 7.79 -2.91 -0.02 2.70 16 16 C 0.04 1.96 5.29 84.66 0.45 2.41 16 17 N -0.90 -45.10 10.76 21.45 0.23 -44.87 16 18 Si 0.96 40.70 29.54 68.60 2.03 42.72 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 C 0.13 5.76 6.10 86.93 0.53 6.29 16 23 C 0.05 1.10 11.36 83.54 0.95 2.05 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.20 4.18 8.06 -2.91 -0.02 4.16 16 28 H 0.17 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.08 3.21 7.55 -2.39 -0.02 3.19 16 33 H 0.07 2.61 8.04 -2.39 -0.02 2.59 16 34 H 0.38 19.16 7.57 -74.06 -0.56 18.60 16 35 H 0.27 12.90 8.31 -92.70 -0.77 12.13 16 36 H 0.07 3.23 8.03 -2.39 -0.02 3.21 16 37 H 0.04 1.89 8.03 -2.39 -0.02 1.87 16 38 H 0.21 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -72.92 323.70 1.92 -71.00 By element: Atomic # 1 Polarization: 29.12 SS G_CDS: 0.51 Total: 29.63 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 5.72 Total: 10.14 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.33 Total: -93.85 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -2.01 Total: -59.64 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.72 kcal Total: -72.92 1.92 -71.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.539 kcal (2) G-P(sol) polarization free energy of solvation -72.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds