Wall clock time and date at job start Tue Mar 31 2020 01:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39861 * 125.89874 * 2 1 4 4 C 1.35318 * 107.92158 * 179.71279 * 3 2 1 5 5 N 1.34957 * 107.74168 * 0.42498 * 4 3 2 6 6 C 1.46494 * 126.03531 * 179.83870 * 5 4 3 7 7 C 1.50706 * 109.46933 * 124.71582 * 6 5 4 8 8 O 1.21281 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.65136 * 359.95409 * 9 7 6 11 11 C 1.54915 * 104.83334 * 204.16738 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 O 1.42893 * 110.71912 * 277.13741 * 12 11 10 14 14 C 1.50700 * 110.71840 * 153.86731 * 12 11 10 15 15 H 1.08005 * 119.99597 * 246.47621 * 14 12 11 16 16 C 1.37868 * 120.00222 * 66.47683 * 14 12 11 17 17 N 1.31519 * 120.00187 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00056 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47657 * 89.99989 * 18 16 14 20 20 H 1.48502 * 109.46764 * 209.99866 * 18 16 14 21 21 H 1.48501 * 109.47053 * 329.99583 * 18 16 14 22 22 C 1.47022 * 125.64528 * 180.02562 * 9 7 6 23 23 N 1.30830 * 125.89541 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47332 * 270.00331 * 1 2 3 25 25 H 1.09004 * 109.46591 * 30.00326 * 1 2 3 26 26 H 1.08999 * 109.47044 * 149.99940 * 1 2 3 27 27 H 1.08005 * 126.04171 * 359.97438 * 3 2 1 28 28 H 1.07999 * 126.13146 * 180.26478 * 4 3 2 29 29 H 1.08997 * 109.47359 * 4.71967 * 6 5 4 30 30 H 1.09002 * 109.47401 * 244.71329 * 6 5 4 31 31 H 1.08997 * 110.36855 * 323.00479 * 10 9 7 32 32 H 1.08999 * 110.36490 * 85.21794 * 10 9 7 33 33 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 34 34 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 35 35 H 0.96699 * 114.00392 * 293.52799 * 13 12 11 36 36 H 0.96995 * 120.00067 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88723 * 59.48678 * 22 9 7 38 38 H 1.08998 * 109.88661 * 298.31659 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0065 5 7 3.6087 -0.6342 0.0009 6 6 4.7898 -1.5009 0.0015 7 6 4.7120 -2.4552 1.1652 8 8 3.7635 -2.4151 1.9200 9 7 5.6969 -3.3527 1.3677 10 6 6.9012 -3.5100 0.5320 11 6 7.3564 -4.9725 0.7638 12 6 7.0384 -5.1627 2.2705 13 8 8.0941 -4.6410 3.0798 14 6 6.7925 -6.6160 2.5842 15 1 5.8103 -6.9434 2.8919 16 6 7.8213 -7.5277 2.4785 17 7 9.0172 -7.1292 2.1034 18 14 7.5163 -9.3293 2.8666 19 1 7.0937 -10.0373 1.6316 20 1 8.7654 -9.9422 3.3856 21 1 6.4473 -9.4408 3.8914 22 6 5.7475 -4.3379 2.4578 23 7 2.2741 -1.0598 0.0005 24 1 -0.3634 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9923 2.1598 -0.0004 28 1 4.4892 1.3485 0.0122 29 1 5.6884 -0.8905 0.0917 30 1 4.8264 -2.0659 -0.9299 31 1 6.6576 -3.3505 -0.5183 32 1 7.6774 -2.8143 0.8505 33 1 8.4236 -5.0844 0.5726 34 1 6.7768 -5.6637 0.1519 35 1 8.9277 -5.1242 2.9985 36 1 9.7410 -7.7706 2.0294 37 1 4.8780 -4.9932 2.4060 38 1 5.7714 -3.8258 3.4196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592853779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:10 Heat of formation + Delta-G solvation = -0.040775 kcal Electronic energy + Delta-G solvation = -21709.729268 eV Core-core repulsion = 18361.257336 eV Total energy + Delta-G solvation = -3348.471932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.16178 -39.45321 -37.32982 -34.42656 -33.81985 -32.21479 -30.69126 -29.88075 -29.26818 -28.38849 -26.29180 -24.70173 -22.46187 -21.15357 -20.13135 -19.64883 -18.86674 -17.42501 -16.94237 -16.75073 -15.69962 -15.15964 -14.99175 -14.45377 -14.29089 -14.11691 -13.85871 -13.37745 -13.16444 -12.98325 -12.77142 -12.34050 -12.10088 -12.05283 -11.99507 -11.60291 -11.48721 -11.41484 -10.93670 -10.70227 -10.54407 -10.42349 -10.19463 -9.70935 -9.46334 -9.05928 -8.73488 -8.49076 -8.29298 -8.12832 -6.35826 -4.42985 1.93443 2.43722 2.86965 2.87385 3.16597 3.24333 3.28572 3.40608 4.22238 4.47507 4.69732 4.76838 4.92384 4.94430 5.03368 5.25406 5.41192 5.61502 5.63026 5.66821 5.78546 5.82734 5.85373 5.89599 6.09022 6.11894 6.37496 6.59841 6.73491 6.79773 6.86037 7.01341 7.21826 7.25911 7.67626 7.84035 7.92843 7.95389 8.47133 8.59686 9.25448 9.38121 10.72071 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036930 B = 0.003655 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.007529 B = 7657.948372 C = 8054.299902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.058 3.942 3 C -0.272 4.272 4 C 0.052 3.948 5 N -0.359 5.359 6 C 0.120 3.880 7 C 0.508 3.492 8 O -0.524 6.524 9 N -0.608 5.608 10 C 0.091 3.909 11 C -0.137 4.137 12 C 0.249 3.751 13 O -0.587 6.587 14 C -0.535 4.535 15 H 0.065 0.935 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.125 3.875 23 N -0.262 5.262 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.145 0.855 28 H 0.172 0.828 29 H 0.122 0.878 30 H 0.112 0.888 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.387 0.613 36 H 0.270 0.730 37 H 0.073 0.927 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 12.948 -7.584 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.109 4.109 3 C -0.301 4.301 4 C -0.093 4.093 5 N -0.141 5.141 6 C -0.005 4.005 7 C 0.293 3.707 8 O -0.400 6.400 9 N -0.342 5.342 10 C -0.031 4.031 11 C -0.176 4.176 12 C 0.208 3.792 13 O -0.397 6.397 14 C -0.574 4.574 15 H 0.083 0.917 16 C -0.130 4.130 17 N -0.538 5.538 18 Si 0.732 3.268 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C 0.003 3.997 23 N -0.084 5.084 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.089 0.911 27 H 0.163 0.837 28 H 0.189 0.811 29 H 0.140 0.860 30 H 0.130 0.870 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.239 0.761 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.080 12.020 -7.045 15.201 hybrid contribution 0.677 -0.489 -0.040 0.836 sum -5.403 11.530 -7.085 14.572 Atomic orbital electron populations 1.20121 0.86923 1.02853 1.02828 1.22387 0.96997 0.90919 1.00613 1.21311 0.91606 0.99575 1.17656 1.22512 0.99792 0.84575 1.02422 1.48052 1.05023 1.04196 1.56829 1.21487 0.85521 0.93610 0.99872 1.19988 0.82498 0.81616 0.86559 1.90755 1.32044 1.70379 1.46848 1.48622 1.20939 1.34357 1.30279 1.22569 0.86538 1.00782 0.93228 1.23328 1.02250 0.91132 1.00850 1.19424 0.83098 0.90612 0.86050 1.86093 1.24696 1.60101 1.68828 1.21546 0.97210 0.91704 1.46911 0.91651 1.24987 0.94858 0.99676 0.93488 1.69565 1.01350 1.35605 1.47306 0.86382 0.77926 0.83693 0.78816 1.20424 1.20960 1.19636 1.22102 0.99459 0.89450 0.88681 1.77479 0.85974 1.22368 1.22575 0.90709 0.90749 0.91123 0.83715 0.81059 0.86023 0.87034 0.92136 0.91600 0.89488 0.91313 0.76121 0.92046 0.90919 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.45 36.01 0.38 -0.34 16 2 C 0.06 0.83 7.22 -82.41 -0.59 0.24 16 3 C -0.27 -3.33 10.74 -40.02 -0.43 -3.76 16 4 C 0.05 0.63 11.45 -17.22 -0.20 0.43 16 5 N -0.36 -5.43 3.40 -62.54 -0.21 -5.65 16 6 C 0.12 1.62 6.00 -5.19 -0.03 1.59 16 7 C 0.51 9.46 7.88 -10.98 -0.09 9.38 16 8 O -0.52 -12.02 16.03 5.56 0.09 -11.93 16 9 N -0.61 -11.59 3.33 -170.52 -0.57 -12.15 16 10 C 0.09 1.51 6.68 -2.53 -0.02 1.50 16 11 C -0.14 -2.80 5.67 -24.57 -0.14 -2.94 16 12 C 0.25 5.85 0.86 -89.93 -0.08 5.77 16 13 O -0.59 -14.44 13.09 -35.23 -0.46 -14.90 16 14 C -0.54 -13.80 8.21 -34.44 -0.28 -14.08 16 15 H 0.07 1.70 7.53 -52.48 -0.40 1.31 16 16 C 0.07 1.82 5.28 -17.82 -0.09 1.73 16 17 N -0.90 -22.52 10.70 55.43 0.59 -21.93 16 18 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.12 2.78 6.22 -3.06 -0.02 2.77 16 23 N -0.26 -4.58 11.64 33.67 0.39 -4.19 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.15 1.34 8.06 -52.48 -0.42 0.92 16 28 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.12 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.11 1.29 7.85 -51.93 -0.41 0.88 16 31 H 0.06 0.79 7.48 -51.93 -0.39 0.40 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.09 1.84 7.77 -51.93 -0.40 1.44 16 34 H 0.07 1.45 8.04 -51.93 -0.42 1.03 16 35 H 0.39 9.59 6.99 45.56 0.32 9.91 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.07 1.68 7.63 -51.93 -0.40 1.29 16 38 H 0.06 1.44 8.07 -51.93 -0.42 1.02 16 LS Contribution 322.12 15.07 4.85 4.85 Total: -1.00 -31.93 322.12 -6.53 -38.45 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.60 Total: 10.17 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.59 Total: 2.27 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.21 Total: -43.91 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.37 Total: -26.83 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.93 -6.53 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.410 kcal (2) G-P(sol) polarization free energy of solvation -31.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds